RNA id: XM_039800205.1


Basic Information

Item Value
RNA id XM_039800205.1
length 4663
RNA type mRNA
GC content 0.46
exon number 23
gene id LOC120558879
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 20397340 ~ 20409354 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTAGGTTTCGTTTCCCCGGACTGGCAGGCTGTGTGGGTGCACCTGCTTTAGCCATCGGAGCTTGACCGCCTCCGTGTTGCAGCTCCATCAAACCGTGTTGCAGCGCCATAAAACGAGAAACACCGCCCGTGTGAACTGTCCGGGGATAGAAAGGGAACCGTACAACCTGAGCGATATATTATAACCTCTTTGGATATATTGTATCCATACTCAGTCCGGACGTTTTCTTGTTTGAACATTTGTTTGATCGAATCAATCTTCGATCATGGTTAGAAAGAGGTTATCTATAGGCATATGCTGCCAAATTGGAGTCGAATTCTTTGAGTTTCTAAAGGAGAGTGATAGAGCATCCATCACAGACAGATTGGAACTAAGAGACATTTACAACAATGAGTTCAGGAGCAGaaatcCAGGAACCAAAGATCCAAACTTCGGTAACGTCCTTCATGCCTTGAAGGTGTCCAACAAAATAACTAGACGAAGAGACACTATTCGCTTCAACTCCACGGTAACAGCTCTTTTTATGGACCAGTGGCACTCACCAAGGAGCAGTCGGCCAGAACCAGTCCAGAGTGGAGCGGCCGGTCCCAGGACAGTTCAGACCTTCACCTCAGGAGATCAGGCAGAGACGGGAGTCCGCGCCCGGAGGAAACTGGCCAGTCTTCTGATGAACAGACTGAAGACAGACAAGGCTCAGTTCATCTCTGACAAACATGGCATCCGCATTGACTCCAAACATCAGTTTGAGAACGGGAAACTTTGCTTGCGCGTTGAAGACACTTGTGAGtgcGTGGTAAATCTGAATGTGGAAAACACTGGAAAAGAACCTGTGTATTTCACCTACTACACCCCACTGCACTGGCTCAGGGACATTATTCTGAAGGATGAGCACAACGTGACCAAGAAAAACCCTCTGTGTCTGCAGCCAGGTGACAGCTATGAAATCCAGGTTCACATCCGCTGCAGTTTGGTTGGTTTCTATCCAGCTACACTGGCCTTTGAATTCAAACCAGACCTGCAGCCCTCCTCCGCTGCTTTCCACATTGTGCGCTTCATTGAGGCTCAGTGTAGAACTGCCTTGGGACTGGAGCTGGCACCTATAGCGCCCTACAAACCCCGCTCCCTCCCTGCCTGGACCCCTGACGCTAATTTCACGATTGTGGATGGACAACGACCTGAAGGGCTGTCAATAATGCAGCTACAAAATGTGATTGAGCTAAAACAGTATCGAGTACCAGCATACATGAACCAGCTCATCCAGTTGCTGAAGCAGTCTACTTATTTCTGCGATAGAAGAAGGGCCTTGCTGGAAAGTCCCCTGAGCTGGGAGAACTACTCCGAGAGGTTTCAGCTGCTGCTGTATCTGGAGGAGCTTCAGATGGAGGTCGACATCAAGAGATACAACATCCCCAACAGTGAAAAAGAAGAACACGCCGTCATGGTCAGAGATCGGGTCAACAAGAAACTTCTCATTCTGAAGGTACCTGGTGTGTCTGAGAACCGCCCGTCCGTGCTACGAGGGGATTCACTGCTGGCCTATCCTGCAGGAGAAAAAGGGGAGAAGTACCGCGGCTACGTCCACAGTGTGCAGCTGGACAGCGTCAAACTCGGCTTCAGCTCAAAATTGCTGGATCGCTTTGTAGATAACATGAAGTTCAATGTTGAGTTTACTGTCAACCGCCTGACTGTGCGCGTTCAGCACAGAGCAGCAGAGCTGGCATCTACATTCAGACTGGGAGAGGTGTTGTTCCCTGCCGCACCTGCCGACTCCTCTCAGCAACCTGAGCTTCCTCAACTCAGGCTGTTTGATTCAAAGCTGGAGAAAAACCCAGAGCAGTATCAGGCCGTACAACACATTGTGGCTGGCTCATCCAAACCTGCCCCTTACCTGGTGTTTGGCCCACCTGGAACAGGCAAAACTGTGACTCTGGTGGAGGCGATCAAGCAGATAGAGAAGACCCAGGCCTCCTGCCACATCCTGGCCTGTGCTCCCTCCAACAGCGCTGCTGATCTGCTCTGCATGAAGATTCTGGAACACGTGGATGAGCATGAAGTGTTTCGCATGTACGCCAGCAGCCGAGACCCAGAACATGTCCCTGAAAAACTAAAGGCATGCTCTAACCTGGTAGGGGACTGTTACCTATTTCCTGCTAAAGAGAAGCTGATGGGGTATAGGATCATGGTCACCACCCTGTTAACCGCTGGAAGGTTCGTCTCAGGAGACATTCCTGATGGTCATTTCACTCACATTTTTGTGGACGAGGCAGGACACGCTGTGGAGACCGAATGTTTAGTCCCATTGGCAGGGCTGCTGGATGCAGAGTCTGGTCAGGTGGTTCTGGCTGGAGACCCCAAGCAGCTCGGACCCATTCTCAGATCCCCTTTTGCGCTGAAATACGGCATGGGAGTGTCCCTCTTGGAGCGCATGATGAATGATTTTGCTCTGTATCAGAAGGACGAAGGTGTGTTCAACAATCGCTTTGTCACCAAACTGCTGCGCAACTACAGGTCCCATCCTGCCATTCTCAAGGTTCCCAACGAGCTCTTCTATGACGAAGAGCTGCAGTGTTGCGCGGATGAAATGTTACGCAACTCCTACTGCAGATGGGAATACCTTAAGAAGGAGGGCTTCCCGGTGATCTTCAAAGGCGTGACCGGTGTAGACGAGCGCGAGGCCAGCAGTCCGTCATTCTTTAACATAGCAGAGGTGGAGGTGCTGATGGACTATGTGAAGAAACTGCTGCAGACACACGCCAAGAGAGGCCTGGCTACCATCTCACCCAGAGACATAGGCATCATCGCCCCCTACAGGAAACAGGTGCAGAAAATCCGTAAGGCCCTCGAAAAAGTTGGGAAAGACTTTAAATTTAAGGACATGAACACCCTAAAGgttGGTTCGGTGGAGGAGTTCCAGGGTCAGGAGAGGAGAGTGATCATGGTGTCTACAGTTCGGAGCAGCCCCAATTACGTAGAGATAGACAAACAGTTCAACCTTGGCTTTGTCAAGAACGAGAAGAGATTCAATGTGGCTGTGACTCGAGCTAAAGCCCTGCTGATCGTGGTGGGAAACCCCAGGGTGCTGAACACAGATCCTACCTGGGCCCGGTTCATCCAGTACTGCCGAGATGAAGGAGGCTACGATGGTTACGAGCACGTAGAGGAGGACGAGGACGTGGTGGAGagactctctctcctctacatCAACATTAATGTTCAAGTGGAGACTGCAGAGAGCGCCGTTCAGCAGCACCTGGACCCCGAGTGGAGGAGCGACCTGTGAGGGAAAGGAGAACACAAGCTTCCATCCGGATTCATATTTGCATCAAAGTTTTAAGACAAGGTCTCTAAATTGGTATTTAAATTCTCATAAAAAAGGGCTTAATGGCACCTTTCCATGTGATGTTATTGTCTTTTTAATGTGAGCTACTGTATTTATAAACTTGACCAAAGACCACAAAGCACAAGGAGCTGATTCATGTTAAGAGCAGACAGTTTCTCTCCGGCTACCTCAGTGGACTGCACTTACACCACTTGGCTTCAAACAGCTGCAAACGCTCCTTGTACATAGTTAAAATCACCGCTTATGATTTGGAGACTTGAAGCTTAAATTTTAAGCAAACAAGACCATCAGCAATAAGATTGGCCATCTCTATATAGTCATTCTTAATGCCTGTCCGATTCCCTGCataatcagatgaaacgatttaCAGCATGCACTTTCACTTTCCCAGTGAGTAGTACGTTGGCCAGTTAAAAGGAAGCAgaaggaaaacatttttttttaagttgtatTTTGTGGCTGATACCCAGGCAAAAACACAAGTCAGCCACAGTCAGTCATTTAACAGATGGAGAGAATTTGAAAGGATTCTAAACCGATCCTGAATTGGCCATTTTCCTTTTGTACGTAATATGTCTCTATTATTTATGAAATACATTGGGAGACGAGTTTTTAATTAATGTTGGTGGCTAAATCAGTTTGGCCACAAATAGATACATTACCAAATCGCTATGCTTCCTGCAAACAGCCattgcaaaaagaaaaatagtatAAAAATATGTTGCATCTTTCTTTCACTCACTTCCAAAAGGAAAGCCCGCGCTAGCCAGATCAAGATGAGGCGGTGGTGCTCATGGAGACACTGCCACTGTAGTCCAGGGGTTTCCAAAATCAATCCAAAATAATTTCACCAACCAAAACTGTCTCAGGGTTATTTCATTGAATCGCTGCTCTTTTAGACTCATGAAGTTGTATGTGTCGTTGGCCTGTAACAGTTCTTACATAATTGTCAAATGGTCTACATAATCGCGGTGTCTTCGTTTAAccacaattaattgctaacattagctaaggtcttaagaTGTATGACTGGTAAtcgattttgtttagatatgccaaaagatgtatcctggaattaattcaaaactttcatttatttaaaaaaatacatatttttaaatttgacggagacaattatattgttaatcgcaattatttctgagacaattaattgtacagcaaacTTTGGAATAGTTACAGCTCTACATTTGTACTGTTTGTCTATGTATCCACTTATTTTGAAATCACCATTACACAATGCAGGTTTTTAAATGATTAACCAATTtaaaaatgtctatttttatgttttgcattttctgaaaa

Function

GO: NA

KEGG:

id description
K18422 MOV10; helicase MOV-10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68592 lncRNA upstream 226221 20157789 ~ 20171119 (+) False G51317
TU68590 lncRNA upstream 232125 20161419 ~ 20165215 (+) True G51317
TU68552 lncRNA upstream 332997 20063992 ~ 20064343 (+) False LOC120558901
TU68535 lncRNA upstream 401224 19995881 ~ 19996116 (+) True G51283
TU68534 lncRNA upstream 405147 19990773 ~ 19992193 (+) True G51282
TU68645 lncRNA downstream 36889 20446243 ~ 20532569 (+) True LOC120559772
XR_005639130.1 lncRNA downstream 251943 20661297 ~ 20662553 (+) True LOC120558477
TU68681 lncRNA downstream 342241 20751595 ~ 20752345 (+) True G51386
XR_005639095.1 lncRNA downstream 363099 20772453 ~ 20779399 (+) True LOC120558354
TU68980 lncRNA downstream 811297 21220651 ~ 21222557 (+) True G51625
XM_039800210.1 mRNA upstream 1491 20382206 ~ 20395849 (+) False LOC120558882
XM_039800209.1 mRNA upstream 1491 20382223 ~ 20395849 (+) True LOC120558882
XM_039800237.1 mRNA upstream 28892 20349467 ~ 20368448 (+) True LOC120558898
XM_039800260.1 mRNA upstream 73237 20322245 ~ 20324103 (+) False LOC120558908
XM_039801770.1 mRNA downstream 36617 20445971 ~ 20526333 (+) False LOC120559772
XM_039801769.1 mRNA downstream 36821 20446175 ~ 20532505 (+) False LOC120559772
XM_039801241.1 mRNA downstream 291407 20700761 ~ 20705809 (+) False zgc:174906
XM_039801242.1 mRNA downstream 291407 20700761 ~ 20703562 (+) True zgc:174906
XM_039801243.1 mRNA downstream 291407 20700761 ~ 20703562 (+) False zgc:174906
unassigned_transcript_229 other upstream 72099 20325169 ~ 20325241 (+) True trnaf-gaa_3
unassigned_transcript_228 other upstream 75758 20321511 ~ 20321582 (+) True trnah-gug_9
TU68517 other upstream 396902 19996511 ~ 20000438 (+) True zgc:194242
TU68519 other upstream 396902 19996511 ~ 20000438 (+) False zgc:194242
TU68439 other upstream 628776 19767652 ~ 19768564 (+) False LOC120558920
TU68644 other downstream 36889 20446243 ~ 20532462 (+) False LOC120559772
TU69094 other downstream 880234 21289588 ~ 21290962 (+) True G51716
TU69116 other downstream 951936 21361290 ~ 21363640 (+) False G51734
TU69117 other downstream 951936 21361290 ~ 21364430 (+) True G51734
TU69195 other downstream 1149536 21558890 ~ 21559349 (+) True G51804

Expression Profile