RNA id: XM_039800311.1


Basic Information

Item Value
RNA id XM_039800311.1
length 4343
RNA type mRNA
GC content 0.47
exon number 24
gene id itchb
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 31162519 ~ 31191356 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTAGTTGGATTAACTAATTATGTCATTTCTACCAGCATAGTTTAGCGTACCAAAAAGGCAATGTGGAGGGATAATGATTACAAATAAGTGGCCGTTGTCAGTTATTGACATACATGCTGGTTACTAGTAGCTACAGTTTGAATTAAAGGAATGATTTGGAGTTGTTTTCCCTTTTTGCTAAATTACGTGTCTTCACATGGCGAGAACAGTACACCGAACTCAATTTAATATCTGGCAACGTTAACGCCTTCACCCCAGCCCTATGTCATGGCAAGTGGAGTCACCAAGTCGAGCACTTCCAACGGTTTACCTATGAAGGCACAGCTACAAATCATTGTGCTATCAGCAAAACTAAAAGAGAACAAGAAAAACTGGTTTGGTCCCAGTCCTTATGTGGAAGTGACAGTCGACGGCCAGTCCaagaaaacagagaaatgcAACAACACCCACAGCCCCAAATGGAAGCAGCCGCTCACTGTGATTGTGACTCCATTCAGCAAACTGGTGTTTCGCGTCTGGAGCCACCAGACCCTGAAGTCAGACGTGTTGCTAGGCATGGCCACGCTGGACGTCAGTGACACGCTCAAGTCTAATGACATGACAATCTCGGAGGTGGTGCAGACCTTACAGCTGTGTGCAGACCGAGACCTGTCAGATGTGGTTGGAGACCTGTCGGTCTGCCTGGACGGCATGACGGTCGACGCCGAGATGTTCGCCGCCGCCGAGGCCGACCATCACAGTACATCAAATGGGGAATCATCGCAAACCAATGGGGATCATGTCATAAGGCGGAGTCGGGACAGCTCCCCAGCTGTGGACGCTGTAGAGCACAGGTCTTCTCCCAGTGGCCGGAGGTCAGCCAACAGCACAGGGTCTCCTTCAGTGTCATCAGGGGGCTCGAGGCCTCTCCGACCACCCAGGCCCTCCAGACCTCCTCCTCCAACCCCACGCAGACCAACCTCTTCACCAGCACCGTCCAGTAATGGCTCTGCGCCAGCTGATGGCAGCGATGGTCAGTCTGGTTCTGATACACCAGTGCGTACACCGGCCTCAGGACCCTCACCAGCCCCAGAATCAAGTCCATCGACAGGCTCAGACACAAACTCCACACCGGCCTCCAGCTCTGGAGCTGCTGCAACCAGACAGCCGGCCAGCAGCATCACCCCTGCTGTCATCCCAAGAGTCCCCGCTGTCAACGCTGTGCCATTGCCCCCTGGGTGGGAGCAGAGGGTGGATCAGAACGGCAGGTTGTATTTTGTCGATCACGTGGAAAAGAGAACAACGTGGGAACGCCCTGAACCACTGCCCCCGGGCTGGGAACGTCGTGTCGACCAGATGGGGCGGGTCTACTTTGTCGATCACATGACGCGAACCACCACCTGGCAGCGTCCCACAATGGAGACGGTGCGTAACTACGAGCAGTGGCAGCACCAGCGCAGCCAGCTACAGGGCGCCATGCAGCAGTTCAACCAGAGGTTCATATTCGGGCTACAAGACCAGGGCTCAGCCACTCAGAATAAGGATTTTGATCCTCTCGGGCCTCTGCCACATGGATGGGAGAAGAGAACAGACACAAATGGCAGAGTTTATTTTGTACATCATTCTACGCGGACAACACAGTGGGAGGACCCACGAACACAGGGTGTGCTGAATGAGAAGCCACTTCCAGAGGGCTGGGAGATGAGGTTCACTGTAGATGGCATTCCCTACTTCGTAGACCACAACAGGAGAACAACCACCTACATCGACCCTCGCACTGGAAAATCCTCACTTGAAAACGGACCTCAGATCACCTACGTTCGAGACTTTAAAGCCAAAGTACAGTACTTCAGATTCTGGTGCCAGCAACTGTCATTGCCTCAACACATCAAGATCACCGTAACCAGAAAAACCCTGTTTGAGGACTCCTTCCAGCAGATAATGAGCTTCAACGCTCAGGATCTGCGGAGGAGACTATGGATAATCTTCCCAGGAGAAGAAGGCCTCGACTACGGAGGCGTGGCCAGGGAGTGGTTCTTCCTGTTGTCCCATGAAGTTCTGAACCCCATGTACTGCCTGTTTGAATATGCCGGTAAAGATAACTACTGTCTGCAGATCAACCCTGCCTCTTACATCAACCCGGACCACCTCAAGTATTTTAAGTTCATAGGACGCTTCATTGCTATGGCTCTTTTCCATGGCAAGTTCATCGACACCGGTTTCTCACTGCCATTTTACAAGCGCATCCTAAACAAGCCATTGGCCCTCAAAGATCTGGAGTCAATAGACGAGGAGTTCTACAACTCCCTCATGTGGATCAAGGATAACAACATCGAGGAGTGTGGGCTAGAGATGTACTTCTCTGTTGACAAAGAGATCCTGGGGGAAATCTCCACCCACGAGCTGAAACCAGACGGAGGAGACCTCCCAGTCACTGAGGAGAACAAGGAGGAGTACATCAGACTGGTAGCAGAGTGGAGGATGTCCAGAGGAGTGGAAGAGCAGACACAGGCTTTCTTTGAAGGCTTCAACGAAGTTCTCCCTCAGCAGTACCTGCAGTACTTTGATGCTAAAGAGCTTGAGGTGATGCTGTGTGGTATGCAGGAGATCGACCTTGCAGACTGGCAGAGAAACACTATCTACAGACACTACGCTCGAAGCAGCAAACAGATCGTCTGGTTCTGGCAGTTTATAAAGGAGATGGACAATGAGAAGAGGATGAGGCTGCTGCAGTTTGTCACCGGTACCTGTCGCCTGCCTGTAGGAGGCTTTGCCGACCTAATGGGAAGCAATGGTCCCCAGAAGTTCTGCCTTGAGAAGGTGGGGAAAGAAAACTGGCTTCCCAGAAGCCACACGTGCTTCAACAGACTGGACTTGCCACCCTACAAGAGCTACGAGCAACTGAAGGAGAAGCTGATGTTTGCTATCGAGGAGACAGAAGGCTTCGGACAGGAGTGATAGAAACCAGGAGAAGTTTGAATAGTGGGTGCAGGAGTCTGAAGGAGTATAGACTACCAGAGTTCAAATCAGGGAGCCCCTTCAGAAAAAAAAGCGGGTGTTTTATGTGTTTCTgctcatgcatgcatgcacacacctgTATGGTACTtctatgggtgtgtgtgtgagactgttgCCTGCATGTTATTGCAAAGGAGCTGGGATTTGCATCTACGCCATGCTCGCAGCAGGCCTCTCAATGCTTGATTGGTACGTGGAaattttttattctttgaaaCCAAAACACAGAAGGTGCTCCGAATCTCTCAGAATGTGTGGCAAATTATGCATGGGATCCTGAAAACTCACCCTCCGTGACATCTGTTTTAAAGGGGCTGCAGTAGTTTTTCCTCCCCGCACATGATCATCATGCAGTGACAGGCAACAGGGTGGCCTTGGGGCTACAGTCGAAATCTCATAACCAGAAGGGTCCCAGGTTCTAACAGTAGCGTCTCCTCAAAGTGTCTTTGACTAGCTGATTTATTCTTATTTAGTTGCTCTGCATTAAAGCATCTGGTAAATGTCAGGGTTTATTTTAAGGCAAGATTAAGAgggtgtgcttttttttttttttctcaaaggcTTAAGTTTCACCAAAAAGCTAACTTTGTTGCTCTAAGATTGTTTGTTGCATCCACTTTTAGCATCATCCACATTGTCATTCCCCATCACATCCTCAAATCTCTCACACTTTCATCTGCATATCTACTCATGACTAAAgtggatgttgttttttttcttcttttttttaaagtaacgtgtgaaaatataaaatgataGCTACGTCATAGTGAATTTATAAAGAGTGCCCCAAAATAATGCTTAACTAACAAGACAATCTTGGTGCTGCAAAGAGATTTGGGCATCATGCCTAATATAAAACACAAGAAAGAAAGTGTTATGTGTTCCCAGTTCTATAGTATGTGATCTACGAATCACTTAATAATTGTGAAAAGTGTTGTAGCCTCCATTATTTATAGTGGTGGCAAATGTGGAAGACTGACCCTAGTTTTATAGGGCTGTAGTTTTTACGCTGTGATGGGGTATGGGACATCTTGGATTAGAGTATTCTGGGAGTATTTCATAAGTTATTCATCTTAATATCGGCTTCAGAAAAATTTTACACCTTCCTTAATTTGAATTCATTGGGCGATCTGAAGAAATCCATTTGGGATGAAATAAGcattttaagatatttatgtatttagtaCTCAAGATGTACTTGACTTAATGTATCAGAacttgaaaaaatgacaaaacgcAAAAGACAAGTGAAAAACACCACATGCAAGTCAAACTAAATCTTTTAAGTTTAGGTAAAatcttttaataatattttgaatgCATACTttgcaaaaagaaaattg

Function

GO: NA

KEGG:

id description
K05633 WWP1, AIP5; NEDD4-like E3 ubiquitin-protein ligase WWP1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72835 lncRNA downstream 64334 31097980 ~ 31098185 (-) True G54509
TU72834 lncRNA downstream 97547 31064741 ~ 31064972 (-) True G54508
TU72791 lncRNA downstream 273301 30889018 ~ 30889218 (-) True G54470
TU72754 lncRNA downstream 376722 30785093 ~ 30785797 (-) True G54444
TU72715 lncRNA downstream 455758 30704286 ~ 30706761 (-) True G54414
TU72888 lncRNA upstream 44389 31235247 ~ 31235474 (-) True G54549
TU72910 lncRNA upstream 156423 31347281 ~ 31350577 (-) True G54567
TU72945 lncRNA upstream 300698 31491556 ~ 31527860 (-) True G54599
TU72947 lncRNA upstream 307919 31498777 ~ 31500889 (-) True G54600
TU72956 lncRNA upstream 432263 31623121 ~ 31623330 (-) True G54609
XM_039801623.1 mRNA downstream 20645 31128228 ~ 31141874 (-) True e2f1
XM_039799270.1 mRNA downstream 37428 31113760 ~ 31125091 (-) True LOC120558334
XM_039801205.1 mRNA downstream 104943 30988074 ~ 31057576 (-) True ctnnbl1
XM_039800564.1 mRNA downstream 181343 30928243 ~ 30981176 (-) True LOC120559110
XM_039800561.1 mRNA downstream 259611 30897279 ~ 30902908 (-) True zgpat
XM_039801985.1 mRNA upstream 274910 31465768 ~ 31469785 (-) False LOC120559902
XM_039801984.1 mRNA upstream 274910 31465768 ~ 31469785 (-) True LOC120559902
XM_039800341.1 mRNA upstream 1102084 32292942 ~ 32323275 (-) False LOC120558955
XM_039800343.1 mRNA upstream 1102084 32292942 ~ 32321859 (-) False LOC120558955
XM_039800342.1 mRNA upstream 1102084 32292942 ~ 32321823 (-) False LOC120558955
TU72538 other downstream 1089820 29971196 ~ 30072699 (-) False tafa5l
XR_005639345.1 other downstream 1096578 30008242 ~ 30065941 (-) False tafa5l
XR_005639344.1 other downstream 1096578 30008242 ~ 30065941 (-) True tafa5l
XR_005639347.1 other downstream 1096579 30008242 ~ 30065940 (-) False tafa5l
XR_005639346.1 other downstream 1096579 30008242 ~ 30065940 (-) False tafa5l
unassigned_transcript_235 other upstream 36202 31227060 ~ 31227131 (-) True trnaq-uug_1
TU73035 other upstream 1116064 32306922 ~ 32312778 (-) False LOC120558955
TU73036 other upstream 1126102 32316960 ~ 32321952 (-) False LOC120558955
TU73146 other upstream 1576499 32767357 ~ 32773486 (-) True G54756
TU73247 other upstream 1689335 32880193 ~ 32887290 (-) True G54834

Expression Profile