RNA id: XM_039800314.1


Basic Information

Item Value
RNA id XM_039800314.1
length 3096
RNA type mRNA
GC content 0.41
exon number 6
gene id znf740b
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 20713382 ~ 20720457 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTCCGGTGGCGTTTCCTGTCAGTGTTTGTAAACTGAGAAAAAATTGGAAGTGCGACAAGAAATAATAACCTACAAAACTCTAAAAATCGAACGGCTGGGTTGCTGGGCTGCGAGGCGGTGCTGTCCAGCATGGCCCTGATGCAAGCCAACAACATCCCAGGCCAGAAGAGGATGATGTCCCCCTTGGGTCAAGGGCACAGGGCTAGTCCTGAGAGCCACCAAACCCACTCGCAGCACAGCCACAACCACCATGGACACCAGGCTCACCATGGACAACCCCACAATAGCCACATGGGCCATCCTTCAGCCGGGAGCTGTCCACCCCTACTGATTCGAAAAGACGGGGATTATCACTCATCAAGAATGATGGATGGAAAGGACATGCAGGCAAACCAGAATATGCAACCCAAGAAGAAGCACAAAAAATCAGGGTCATCCAGCAAAGTTAAAGTGGAGcATTCAGTTCCACCAATGGATATGGACGACGATGACAGTTCCTTGAAAGTCCAGAAGAACTTCATCTGTGACCACTGCTATGGAGCTTTCCGGAGTAGCTACCACCTCAAGCGTCACATACTTACACATACAGgagagaagccatttGCTTGCGACGCGTGTGATATGCGGTTCATTCAGCGTTACCACCTGGACAGACACAAGAGGGTGCACAGCGGAGAGAAGCCGTACCAGTGTGATCGCTGCCATCAGAACTTCTCACGGACAGACAGGCTACTGAGACACCGACGGCTATGTACAGTTGGGATGAGCAAGGAGGAGAACCAGTACTCACAGGACACATCTGCCCATCCAGCTTCCTGGAGCCCCCTACAGCCTTCCAACAACCGTCTGACTGTCTGACCCACTGTTTTCCAGAGACCCTACAGACAGCAGCTCAGAAACGTCTCGCGTTGGAGCTCAACAGTACTGTTACTGTGTACAGAAAAACAGCCTAGTTTAAACACAACCAAACTTTACTTTTCTCTGGCCAGCTCTTTCACAGAGCTTGATAGTggattttgtagtttttttaatcTACTGTTCCATTCACTATACAGACAAAATTGGAAGGACTAATTCACAGTTTTGGACAACAGGTCTTGCTATTATGGCAATAACTGAATGAAAACGCAAGTCTCTTTTTATCtgacaggttgtttttttttttttttagtattgcTGCCAGGGGATTGCAAGTATTTTTGACTGCATTGACTGTCAATGTATCATGCAGCACCTCTTAGGTATCCTGTTGATCTGCAATCAACCCCAGTGCTGCCCTCTACTACATATGGACTGTTCACTAaaggacacacatacagaactgTGTAGCTTTTTAGTGTTCaggtttttctcattttgtgttCCTTGTGCACCTAACGAAGTACTAGCTATTGCTTCTGAGTGACAGGTCACAGCAGTCTTGTGGTCTGTGCTGCCACCTATCCAACACTCAAGGTGTTGTGTGCGTAATTTGAAATAAAattttaatgtcatttttgaTAACGCCAATCTAAACACGAAAGAGGCTTATTACACAGTAAATGGCAAACTGTCAGTCTATTTTCACTTCATGTGGTAGTTCACCTTTTTTCAAACACACAATCTAAATGgatctaaaataattttttactGCTATTCGTCCAGCTGTAAAACGGAATGACTGGTGACAGCGATGTCTACAAACGGGTGGAAAAACACTAAAAGTTAACTAGATGCTCCTGAAATATAACATTTTCAACTAATCTTGGTATTAGTTAAGTTGTGTAGCGACTGTTGGCTCACATATTCACTGTTGTACCTTGTTTTAGAGGGGTTTTGTCCTGACTGTTTAAAGGTTACTGTTGAAATACAGTAGAAGGCTGACAGGTTTTGTAGGAAGATTTTTTGATGCTCTTGAACAAAGTTAGTGAgcttttttgtttatataataACTGGATGTAGGAACCACCTGTCTGTTGCAGTAATAGGTGCTTCTGTAATAACCCCCTCAATATAAATGAATTGTGTCTACTGTCTCTCTGTTCCTAGAAAACTGCTGTCAGTCTTTTTTTCCCTGCTCAGCATTGATAGATTTTTCTGActttgaaaaatgtccatcctTTCGGAAGTATTTTGGTAAGTGAGGCTGGGTCAGCGTGTATTCTGAAATCCTGAGATACACCTTAACGTTTGTGAGAGTCCATTAGCACACAATTGGATTAAAACTAGTCCTAGACCTGAAGTTATATTCACCTGAGGTACTAGGGGAAATTTGGTGCAGACTAGTCTAATTCAGTGCCCGGATGAATTCAAACAGTTCTCAGGTGAGAAGACTCATCCACAGATTGAGAGTTTGCCTCCATCTTGACCTGACTGAATGTGATCTGAATACAGTGCCATGTCATTTCAACTCCAGTTTAACCTTGAGCATCTACGATGAAGACGATGAGCAGTGGACAGGGGAATATAAGGTccacatagtttttttttttttttttttttttgtacgaCGATAACCTACATTATATTCTGTTAAGGCCTCTGTATGATGAAATCACAGACTGTAAACACTGGACAGAAGAGGTTAGCTCAATTGTAATGGATTGTATTGTAGACAGGTACTTCTATTGCTGTCAGACATTTAGATTATGTGAAAGGAGTTTGGGGCCCATCACTGACTTGTCTACTTTTTACGaagttaatatatatttaaattgtatTAGGGGTAGAAAATAGTATGTACACttcaaaagaaaatcaaagtaTTTACAAAATTATAATCCTTAGTCTGATCACTACTTATTACAGCTGAAAATAGAAAAAGTCATCCTTCAACTTGCTATTAGGAGTAAAATAAAAGCTGCCACTCTTGCCCTTTTTAGAATAGCAGCCATGATTagtcagcattttttttttttttctctcttttgcatGTATTTGATCTtgtatacattttgtttttggtaaagatacatatttttttttcaatctgaGCCCcaccttttttgtcttttcagggGTAAAGTGAAATTAATTTTGACTCTGTCAATCATACTGTAGTAAACAGTTTTAGGGCCCCAACTGTCTCAATAAAGCTGTTacactttttaaacaaa

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639130.1 lncRNA upstream 50833 20661297 ~ 20662553 (+) True LOC120558477
TU68645 lncRNA upstream 180817 20446243 ~ 20532569 (+) True LOC120559772
TU68592 lncRNA upstream 542267 20157789 ~ 20171119 (+) False G51317
TU68590 lncRNA upstream 548171 20161419 ~ 20165215 (+) True G51317
TU68552 lncRNA upstream 649043 20063992 ~ 20064343 (+) False LOC120558901
TU68681 lncRNA downstream 31138 20751595 ~ 20752345 (+) True G51386
XR_005639095.1 lncRNA downstream 51996 20772453 ~ 20779399 (+) True LOC120558354
TU68980 lncRNA downstream 500194 21220651 ~ 21222557 (+) True G51625
TU69050 lncRNA downstream 509813 21230270 ~ 21233529 (+) True G51685
TU69089 lncRNA downstream 557319 21277776 ~ 21288705 (+) True LOC120559383
XM_039801237.1 mRNA upstream 1122 20706757 ~ 20712264 (+) True csad
XM_039801239.1 mRNA upstream 1122 20706763 ~ 20712264 (+) False csad
XM_039801238.1 mRNA upstream 1122 20706769 ~ 20712264 (+) False csad
XM_039801245.1 mRNA upstream 9824 20700761 ~ 20703562 (+) False zgc:174906
XM_039800289.1 mRNA downstream 25098 20745555 ~ 20750691 (+) False nfe2
XM_039800288.1 mRNA downstream 26731 20747188 ~ 20750691 (+) False nfe2
XM_039800287.1 mRNA downstream 26732 20747189 ~ 20750691 (+) True nfe2
XM_039800291.1 mRNA downstream 34596 20755053 ~ 20759445 (+) True cbx5
XM_039799358.1 mRNA downstream 228845 20949302 ~ 20960825 (+) True calcoco1a
TU68644 other upstream 180924 20446243 ~ 20532462 (+) False LOC120559772
unassigned_transcript_229 other upstream 388145 20325169 ~ 20325241 (+) True trnaf-gaa_3
unassigned_transcript_228 other upstream 391804 20321511 ~ 20321582 (+) True trnah-gug_9
TU68517 other upstream 712948 19996511 ~ 20000438 (+) True zgc:194242
TU69094 other downstream 569131 21289588 ~ 21290962 (+) True G51716
TU69116 other downstream 640833 21361290 ~ 21363640 (+) False G51734
TU69117 other downstream 640833 21361290 ~ 21364430 (+) True G51734
TU69195 other downstream 838433 21558890 ~ 21559349 (+) True G51804
TU69309 other downstream 1062809 21783266 ~ 21788322 (+) False LOC120559721

Expression Profile