RNA id: XM_039800360.1


Basic Information

Item Value
RNA id XM_039800360.1
length 5475
RNA type mRNA
GC content 0.50
exon number 13
gene id brpf3b
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 29928188 ~ 29946233 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCATTTCGATTTAGCACATACTCAGGATCCCAAACAGCTAGTCAGCTAGCCGAAGGAGACTAGTATTTCTCCTTCTCACAAAATTGAGTCGACGATATGCTGTTTTTCAGATTATTAATGCAAATATACTACTCTCGTGTTCTCAGTAAGACTTTGGGATTGACTCCTTGCCTTCCAAACGCCGTGTTGTGAAGAAACACAAGCGGTATAAAAGAGCTAAACATACCGGCTGTGCCAGCAAATTGTAGCTGGCTAACAGTAGCTAACTAGCTTCGCGAGTAGCTACAGCAAGTAAGGCGGCTGGCTAGGCAACCATTACTGTAGAAGCGGCTTCAGACCGGCGGCTTTCGAGCTACCTGTGTCTGTCAGCTGCCATAATAGGAGGTAAAGTGTGATTGGTGGCCTATGAGGAAGCCACGTCGAAAAGGCCAGGTGGCCGCAGGAGGTGGAGCTGATGTCAAGAAGTCCAATGGGGCAGTTGGCAGGCGTGGGGGTGCCCGCCAGCGATCGCCATCCCCTTACAGCCTCAAAGCATCTCCAAGCAGAGAAACACTGTCTTACTCCCAGGCCCAGAAGGTGGTAGAGGTGGAACTGGATGGTAGGCTTCACCGCATCTCTATTCTGGAGCCCTTGGAGGTCATTACTGAAGATGAGATGATGGCTCAGGACATTAGTGAGTGTAACAGTAACAAGGAGAACAGTGAGCAGTCATCATCTCCCACCAGCAGTGCCCAAACAGTCCGCAAACCTGTCTCACTCAGAGGCCGCAGGAAAGACTCCAAATGTCCTCCTGTCAAGTCGCCACGACCTTCCAAGAACCACTGCCCCAATTCTCATCTCCAAACACCTGAAAAGTTGAACACATCACACCATCAGCACATGACCCTCCCTGAACCTAAGTTTCATGTGCTAGAAACCTTCACGCCGGTCGAGGCACCTCCTCTGCCTACAGCATATTACCGTTACATTGAACGCTtagccgaggaggaggaagcTGAGGCAGAATATGACTTGGACGAAGAGGACACTGCTTGGCTGGAGATGGTCAATGCTGGCCGGACGTCAGAGGGTATTTCAGCTGTCACACCAGACACCTTTGAGCTGCTGGTTGACCGGCTGGAGGAGGAGGCATACCGGGAAGCCCGCAGCCGGACGCCCTCTCAAGGTGCTATTGACGACGATGCCTTCTGCTGCGTGTGCCTGGATGATGAGTGCCTTAACAGCAATGTCATCCTCTTCTGTGACTCCTGCAACCTGGCTGTTCACCAGGAGTGTTACGGTGTGCCCTACATCCCCGAGGGCCAGTGGCTGTGCCGCTGCTGCCTCCAGTCCGCTCAGAAACCTGTTGACTGTGTTCTATGTCCGAACCGTGGCGGCGCCTTCAAGCAAACGAGTGACGGCCGCTGGGCGCATGTGGTGTGTGCCATCTGGATCCCTGAAGTCTGCTTTGCCAACACAGTATTTCTGGAACCAGTGGAAGGTGTCAATAACATCCCCCCAGCTCGCTGGAAACTGACCTGCTACCTGTGCAAGCAGAAGGGCCGTGGTGCATCAATTCAGTGCCACAAGGCCAACTGTTACACTGCGTTTCACGTCACATGTGCTCAGCGTGCTGGCTTGTTTATGAAGATTGATCCTGTGCGAGAGACAAATGTTAACGGGACCACGTTCTCTGTTAAGAAGACGGCATTCTGTGAGGCCCATTCGCCACCAGGACAGGAGGCCGTCTCAGATGAGGAGAGTGAAGGAAGAGTGGTAGGCAGCAGAGGTAGGGCTAGTAGGGGACGGAGTGCATACACAGAGGGCCCTAAAACACCGAAAAAAGGCAGGAAGTCTGAAGATGATGCCAAGATGgataaaaagaaaggaaagaagagcACAGAGTCAACAGCACAAAACACTGCTTCACCACAAGTGACCGTGCCACAGATACCCACAAGCAGgcTGAATATCATCTGTAAAGGAATCCTCTTTCAGAGGAAAAACCAATTCATACATAGGCTGCATAACTACTGGTTACTGAAGCGTCAGTCGAGGAACGGTGTGCCGCTGGTCCGGCATCTGCACTCTAACTTCCAATCCCAAAGGAATACTGAAGAGCTCAGGCCTGAGGTGGATGAGAAGGTTTCTGCTGCAAGAGAAGCACTGAGATATTGGCAAAAGCTGCGGCATGATCTTGAAAAAGCCAGGCTGTTGGTGGAGCTCATCCGCAAGAGGGAGAAACTTAAACGAGAACAGGTCAAAGTTCACCAGGAAGCTCTGGAGATGCAGTTGACCCCTATGTTGATGCTGCTCCGCTCCACTCTGGACCAACTACAGGAGAAGGACACAGCCCAGATCTTTGCACAACCAGTCAATATCAAGGAGGTCCCAGACTACCTGGAGTTCATCAGCCAGCCCATGGACTTCTCCACTATGCGCTCTAAGCTAGAGAATCATGCCTACCGCTCAGTGACCGACCTGGAGACGGACTTCAACCTGATGGTGTCCAACTGCCTCCTCTACAACAGCAAGGACACAGTCTTCCACCGAGTAGCGCTGCGTCTTAGAGACTTAGGAGGAGCCATACTGCGCCATGCCCAACGCCAAGCCACCAACACTGGCCTGGACCTGAACACTGGCATGCACCTCTCAGATTCACTGCAGAAACGAGACTTTTACAGCTGCACCTGGGAGGATGTTGACAGCATTCTGGATCCAGACAACCGGCTTCATATGACAGTGGAGGAACAGCTGAAGGAGCTGTTAGAAAAGCTGGACTTTGTCACCTCAATGAGATGCAGTGGCGCCCGAACTCGACGCATCCGCCTACTTCGTCGCGAGATAAACAACATCCGCTACAGGCAGGGCCAACACCCCCGCCACAGCCTTCACAATGGACATTTGAAGGAAGACGATGAGGACGAAGATGACGAGGAAAATGATGACAAAGACGCCAAGCCAGATACCAGCCTTTTGTCTTTGGACAAAGAAGACCTCAAATCCACTTCGCCCCCGACACTGGAACCTACAGGGCCGGCTCCTCCTCCACGACTTGGGGGCGCACCTCTGGAGCCTCCCACCCTGCGACCAATCACAGGGGAGCCTCAGTCCGCCAGCTGGCCCTGCAAACGCCTAAAGATGGACGGTGACCTCTCAGACAGCACCACAGAGAATATGAATTGCACTAAAGCACAGGAGCGGCTTGCGCCTCCCATTTTGCACAGTGAAGGACAGGCGGTGGCCAACGGCTTACCAGAGCTCAGCACCCCCCCACGGCACACCACTGGGGGAGTTGGACGACGAACCTCTGTATTGttcaaaaaggcaaaaaatggAGCCAAGttgttcagagagagagacaatccTTTGCTGAACGGAAAAGGGCAGCAGGACAACAATACAAGCAACGCCCTAACAGCACCCAACTCCACAGCCAGTACCCCATCCACCACACCTTTGTCCACTCCATCCAAGACCCCACAGAAAAGCCCCGGACCCCCCATCCTCAATGAACAATGGACCCCCAGTCGAGACATGTGCTCAGATAGTGAACTGGAGAAGACACCAAACCATACACTGGAAAGTGGGCTGACCAATGGCTTCAACAAGCACAAAGACGGCGGATCAGACTCTGAGTACAGCCCTTGTCCAGTCCTGCACAAAGAAATCAGCTCACCACCTAAGCGAAGCCTCGGGAAACCAGCTCTTTCCAAAGTTCCCTTTCTGGAGATAGTCAACGGAGACTCAGATTACACTGGCATCAGCAGCCAAATGTCTGAGGATGGGACGGAGCTGGAGCCTCTAGATCTGGTGTGGGCCAAGTGTCGGGGATATCCCTCCTATCCTGCGCTGATCATCGACCCAGAGATGCCTGAGGAGGGCCTGCTGCACAACGGGGTGCCCATCCCTGTCCCACCCAAAGAGGTCCTCTGTCTGGGGGAGCAGAGGCAGGAGGAGACCAACGAGAGGCTCTACCTTGTGCTCTTCTTTGACAACAAGCGAACATGGCAGTGGCTCCCACGTGATAAGCTGACACCGTTGGGTGTAGAAGACACAGCGGACAAGCTGCGCATAATGGAGGGCCGCAAGTCCAGCATCCGCAAGTCCGTCCAGGTGGCGTACGACCGCGCCATGATGCACCAGAGCCGAGTCAGCCACAGCCATGGCTTTGTGACCTCCAACTACCTGTAGAGGGCAACAGTGAGCCCTGTGTGCACCCACAGACAGCCACTATGCATCTCTCTTTGGTCTTAAGGCAGCAGGTTGGTCCTACTGCTAGTTGAATTTGTATTCACACTGTGGTCTGAAGAGGTTGTTGCTCAGCACAGTGTCCTGGACTGTAGTCCTTTACCAAACCACTAAACCACTAGTGTCTGACACACTGAGCAGTGGTGTTTGCCTTTGTGTCGTCGTGGATGTGGAGCTCCAGATGTGAATGAAGTTACCTTTTGGTCCCCCGTTGGCTGTGGTCGGTAAGCGTTAAATCTCCGTTCAGGGGTGCATAGAGGCATCTGCTTACTCCACCTGGATGTGTTGAAGCTGAGTGTCTGGATCCAATTCAAAATAATTTCCCTCTATTTTGTATAATGCTACTGCCAAggaatcaaattgtcagaaaagaGATTTGACATGTTTATATGAAACACAGAAGACGTATGAATGGATCACTGCTATCTTTTATACAATagctttttacattttaatcttTTACAAAGACAATTGTATATTATAAAGGCACACtttgtgtacatatgtgtgtattattaaacccaatttaatttaatgttgCTGTTTTAAAATGCGTATTTCAATCAACCCATAAGGGGCAAAGCGACGTGTATAATTTTAGAGATGAAATAATTCCTGATTTGCTGCAGTGTACTTGGCTTGTCTTtgatgtaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcattcAGAGCATACAACACAATGAGCCACTGTTCTTTGTATTTAAATTCTCTTTTTGATACAAagagaaatattttatttatggaAGACcgaactatagaaataaagttataTTGGTTAAAGTTGAGAATTAAAtcttatttaaaacaaatggagtgagtttttaaaaacatgcagccaacattttaacagctgattTTGATGTTGATTTTACTCAAGACCAACCGCCATTATTCACTGCTGACCCCCCCAGAAGATTCTATTTATTGTCGAGAGCCCCATTTTATCAATGGAAAAATACACCTTTATAGACTTGTACTACCTGCATATTTTACCTGCTCACCAAGTATTTTGTCTGAATCAGTATTTCCACATTGTGGGAAATAAATGCtctattaaaaatatttttgggaTACTTAACTGCA

Function

GO: NA

KEGG:

id description
K11348 BRPF1; bromodomain and PHD finger-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72525 lncRNA downstream 25468 29900560 ~ 29902720 (-) True G54272
TU72424 lncRNA downstream 105371 29822520 ~ 29822817 (-) True G54189
TU72420 lncRNA downstream 112738 29814350 ~ 29815450 (-) True G54185
XR_005639328.1 lncRNA downstream 249384 29676371 ~ 29678804 (-) True LOC120559594
TU72537 lncRNA upstream 61804 30008037 ~ 30015317 (-) False tafa5l
XR_005639359.1 lncRNA upstream 549807 30496040 ~ 30500331 (-) True LOC120559738
XR_005639342.1 lncRNA upstream 673033 30619266 ~ 30619890 (-) True LOC120559660
TU72708 lncRNA upstream 687699 30633932 ~ 30635350 (-) True G54407
TU72718 lncRNA upstream 709437 30655670 ~ 30706761 (-) False G54414
XM_039799649.1 mRNA downstream 77234 29846882 ~ 29850954 (-) True bcas2
XM_039801883.1 mRNA downstream 90661 29822872 ~ 29837527 (-) True tmem240a
XM_039801882.1 mRNA downstream 117615 29806794 ~ 29810573 (-) True LOC120559846
XM_039801880.1 mRNA downstream 123206 29783406 ~ 29804982 (-) True atp13a2
XM_039800309.1 mRNA downstream 163520 29752661 ~ 29764668 (-) True cdk11b
XM_039801700.1 mRNA upstream 1673 29947906 ~ 29959771 (-) True mapk13
XM_039801583.1 mRNA upstream 62009 30008242 ~ 30065940 (-) False tafa5l
XM_039801582.1 mRNA upstream 62009 30008242 ~ 30065939 (-) False tafa5l
XM_039799787.1 mRNA upstream 156998 30103231 ~ 30199840 (-) True mtor
XM_039801722.1 mRNA upstream 595268 30541501 ~ 30547082 (-) True LOC120559739
TU72353 other downstream 162315 29761074 ~ 29765873 (-) False cdk11b
TU72358 other downstream 162995 29761074 ~ 29765193 (-) False cdk11b
XR_005639094.1 other downstream 435215 29476009 ~ 29492973 (-) False clcnk
XR_005639350.1 other downstream 2267542 27644783 ~ 27660646 (-) False xpc
XR_005639389.1 other downstream 2729361 27198712 ~ 27198827 (-) True LOC120559934
TU72536 other upstream 24963 29971196 ~ 30065918 (-) False tafa5l
TU72538 other upstream 24963 29971196 ~ 30072699 (-) False tafa5l
XR_005639345.1 other upstream 62009 30008242 ~ 30065941 (-) False tafa5l
XR_005639344.1 other upstream 62009 30008242 ~ 30065941 (-) True tafa5l
XR_005639347.1 other upstream 62009 30008242 ~ 30065940 (-) False tafa5l

Expression Profile