RNA id: XM_039800461.1



Basic Information


Item Value
RNA id XM_039800461.1
length 9106
RNA type mRNA
GC content 0.54
exon number 46
gene id flna
representative True

Chromosome Information


Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 35311194 ~ 35384229 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


agagcccagaggagacagaggagaagcAGAGGTAGAAAAGAGCGAAAGAGCGGAGGGACTAtctcttttttcccctttacGCCACCGGCACAACCAATACACCCATTTCCCCCCCCGACGGGACTGCGCGTGGGGAGGGAGGTCCGGGACCTcagtgcagcacacacacacacacaggccacacactaacacacccTCTGTGACCAGAGGAACAGCAAGCTGCTGCGCGCACTGACTGAGCGGACCGGAGATCCCATCCGACTATACACATACACAGACGAGCTaaagtgagagagggagagagagaaagagggagcgGCCACCCAGAGTTGAGCAGACTCCACCCAGAGGGAAACAAGCCAGCGAACCAAGACACAGCCGAGACCATAAAAATGAGTGGTTCACACCCCCGGCTCCACCAGAGCGCCGCGCCCGCTCCCAACGCTCTCTCCACGGACAAGGACGCAGAAATGCCCGCCACGGAAAAGGACCTGGCCGAGGATGCGCCGTGGAAGAAGATCCAGCAGAACACCTTCACCCGCTGGTGTAACGAGCACCTGAAATGTGTCAACAAGAGGGTCGGCAACTTGCAGACGGACCTCAGCGACGGGCTGCGGCTCATCGGGCTCCTGGAGGTCCTGTCCCAGAAGAAGATGTTCAGAAAGTACAACCAGAGGCCCACCTTTCGCCAGATGCAGCTGGAGAACGTGTCGGTGGCCCTGGAGTTCCTGGACAAGGAGAGCATTAAGCTGGTGTCCATAGACTCTAAAGCCATCGTGGATGGGAACCTGAAGCTGATCCTGGGTCTGATCTGGACCTTGATCCTGCACTACTCCATCTCCATGCCCATgtgggatgaggaagaggagactGATGACGGCAAGCAGAAGACCCCCAAGCAGAGGCTGCTGGGATGGATCCAGAACAAACTGCCCGAGCTTCCCATCACCAACTTCCACAGGGACTGGCAGACCGGCCGGGCCCTGGGTGCCCTGGTTGACAGCTGTGCTCctgGTCTGTGTCCTGACTGGGATCAGTGGGATCAGACCAAACCGGTGGACAACGCCCGGGAGGCCATGCAGCAAGCTGACGACTGGCTGGGCATCCcacagGTGATAACCCCTGAAGAGATCGTTGACCCCAATGTGGACGAACACTCAGTCATGACCTACCTGTCCCAGTTCCCCAAGGCAAAACTGAAGCCTGGCGCACCTCTACGACCCAAACTCAACCCCAAGAAGGCCCGTGCCTATGggccagGTGTCGAACCTGTTGGTAATGTTGTGATGAAGAAGGCTTTGTTCACCGTGGAGACCATCAGTGCAGGAATGGGAGAGGTGCTGGTTTACGTGGAGGACCCTGCAGGACACAGGGAGGAGGCTAAAGTGACAGCCAACAATGATAAGAACCGCACCTACTCAGTCTTCTACATCCCTAAAGTCACAGGCATGCACAAGGTGACTGTGTTGTTCGCAGGGCAGCACATCTCTAAGAGCCCCTTCGAGGTGGAGATCGGCATGGCTCAGGGAGACTCCAGCAAGGCCACGGCCCAGGGGCCGGGCCTGGAGCCCTCAGGAAACATCGCCAACAAGGCCACTTACTTTGACGTCTACACAGCAGGCGCTGGTGTTGGCGAGGTGGAGGTGATGATCATTGACCCTGCCGGCAAGAAGACCACGGTGCCTTGCACCATAGAGGACAAGGGCAACAGTAGCTACCGCTGCACCTACAAACCCATCCAGGAGGGCCAGCACACCATCTACGTCACCTTCGCCGGGGGCCAGATCAGCAAGAGCCCCTTCACTGTCACCGTGGGAGAGGCATGCAACCCCAGCCTCTGCAGAGCTAAGGGCCGCGGTCTGCAGCCTAAGGGCCTGAGGGTGAAGGAGACTGCAGACTTTCAGGTTTACACCAAAGGAGCCGGCACCGGAGAGCTCAAAGTCACCATCAAGGGGCCCAAGGGTCTTGAGGAGCCTTGCAAAAGGAAAGATCTTGGAGATGGCGCGTATGGTTTTGAGTATTACCCCACCACACCTGGAACATATAGCATCACCATCACCTGGGGAGGACAGCACATCCCCCGCAGTCCCATTGAGGTTAAGATTGGCGCTGAGGCCGGCCCGCAGAAGGTGAGGGCCTGGGGTCCAGGGCTGGAGAGCGGCATTGTTGGCAAATCTGCGGACTTTGTGGTGGAGGCTGTTGGAGACAACGTCGGTACACTGGGTTTCTCTGTGGAAGGTCCATCTCAGGCCAAGATTGAATGTGACGACAAGGGCGACGGATCCTGTGACGTGCGCTACTGGCCCACAGAGGCTGGGGAGTACGCAGTGCATGTGCTCTGCAACAGCGAAGACATCCAGCACTCTCCCTTCATGGCTGAGATTGTCAACGCACCAAACAAAGACTTCTACCCCGAcaagGTTAAGGCGCACGGTCCAGGCCTTCAAAGCAGTGGTTTGGCTGTTGGAAAGCCCACTGAGTTCACCGTCGATGCTAAGCAAGGAGGAAAAGCTCCTCTGAAGATTGTTGCTCAGGATGTTGAAGGTACGCCTGTGGATGTACAGGTTAAGGATAATGGCAACGGTACGTACGCCTGTACTTACACCCCACGTAAACCTGTAAAACACACCGCCATGGTCTCCTGGGGAGGAGTCAACATCCCTGACAGCCCATTCAGGATGAATATCGGAGCAGGCTGTCATCCAAACAAGGTGAAGGTGTCAGGACCTGGGGTGGCCAAGACCGGCCTCAAAGCCTTCGAGCCAACATACTTCACTGTTGACTGCGCAGAGGCTGGACAAGGTGACATCAGTATTGGAATCAAGTGCGCCCCCGGAGTGGTGGGACCCGCGGAGGCGGACATTGACTTCGACATCATTAGGAACGACAACGACACGTTCACTGTCAAATATACTCCACCTGGAGCGGGAAGCTACACCATCATGGTCCTGTTTGCTGACCAGGCTATTCCAATGACACCCATCAGGATCAAAGTGGATCCTTCTCACGATGCCAGCAAAGTCAAGGCAGAGGGACCAGGACTCAGCCGCAGTGGTGTTGAATTGAACAAGCCCACTCATTTCACCGTGAGCACTAAAGCAGCAGGAAAGGCAAACCTGGACTGCAACTTCAGCGGCCCAGCCAAAGGAGAGGCCGTCAAGGACTTTGAAATCATCAACAAccatgacaacacacacactgtgaagtACACACCTGTGCAGCAGGGTCCCCTGGGAGTTGCTGTGACCTACGGTGGAGATCACGTTCCCAAGAGCCCCTTCAACGTTGCCGTGGCGCCCACACTGGACCTCAGCAAGATCAACGTCACAGGCCTGGGAGACAAGATGACTGTAGGCAAAGACCAGGAAGTGACCGTCAAATCAAAGGGTGCCGGTGGTCAGGGGAAGGTCGCCGCCAAAGTGACCTCGCCATCAGGGAAGCCAGTGGTCAGCAAGGTGGAGCCAGGGCTGAGCCCAGAGACCAGTCAGGTGAAGTTCATCCCCCGCGAGGCGGGGCCATACCAGGTTGAACTGACCTATGATGGAGCACCGATCCCTGGATCCCCCTTCAGCCCCACAGCTTACCCTGTCTCAGATCCTTCCAAGgtACGCTGCTCTGGCCCAGGCTTGGAGCGCGCCAAGGTGGGGGAGAAAGGGGAGTTCATTGTGGACTGTACCAACGCCGGCCCGGCTGAGCTGACCATTGAGATCATCTCCGACAGCGGCACCGAGGCAGAGGTTCACATCCAGGACAACGGAGACGGCACCTACACCATCACCTACATCCCTCTCTACCCCGGCTCGTACACTCTCACCATCCGCTACGGTGGCCAGGATGTGCCCAACTTCCCCACTCGGCTCAACGTGGAGCCCGCGGTCGACGCCAGTGGAGTCCGTGTGTTCGGAAAAGGAGTGGAGGgcaaaggtgtTTTCCGTGAGGCGACCACAGACTTCACTGTGGATGCTCGTGCTCTCACACAGACCGGAGGTGACCACATCAAAACCGTCATCAGCAACCCGTCCGGCAGCCGTACGGACGCACTGATCACCGATCTTGGAGATGGAACCTACAACGTAGAGTACACTCCCTATGAGGAGGGCCCACACAGCGTGGAGGTTTGCTACGATGGCTCTCCAGCGCCTAAGAGTCCATTCCGTGTTGCCGTCACCGAAGGCTGTGATCCAGCTCGCGTTCGTGTGCACGGTCccggcctgaaatgtggcatcACCAACAAGCCCAACAAGTTCACAGTGGAAACCCGAGGAGCAGGTACTGGTGGTCTTGGTCTGGCGATGGAGGGTCCATCGGAGGCCAAAATGTCCTGCACTGATAACAAGGATGGCAGCTGCAGTGTGGAGTACATCCCATACGAGCCCGGCAAATACAACCTCAATGTCACCTATGGAGGACAGCCCATCACAGGCAGCCCGTTCTCTGTGCCAGTCAGTGACACAGTGGACAGTACCAAGGTGAAGTGCCAGGGTCCAGGCCTGGGTACCAATGTCAGATCCAACATTCCTCAGGCATTCACAGTGGACGCCTCCAAGGCTGGAGTGGCCCCACTGCAGGTCCGCGTACAGGGACCCAAAGGTGTGGTGGAGCCTGTGGAAGTGGTGGATAACGGTGATCAGACTCACACCGTCAACTACGTTCCCACCAGAGAGGGACCCTATTCCATTAATGTGTTATATGCTGACGAGGAGATCCCACGCAGcCCCTACAAGGTGAAGGTGCTCCCCACCCACGATGCCAGTAAGGTGCGTGCCAGCGGGCCCGGCCTTAACACCACCGGGGTGCCCGCCTCTCTGCCCGTCGAGTTCACCATTGACGCCAAAGATGCAGGCGAGGGATTGCTGGCAGTGCAGATCACCGACCCAGAGGGGAAGCCTAAGAAGGCCAATATCCGTGACAACCATGACGGGACCTATCTGGTGTCCTATGTGCCGGACATGACTGGCAGATACACCATCCTCATTAAGTACGGAGGGGACGAGATCCCATACTCACCCTACCGTATCAGAGCCCTGCCCACTGGAGACGCCAGCAAGTGCACTGTCACAGTCTCAATCGGCGGTCACGGTTTAGGCGCAGGCGTTGGCCCAACTATCCAGATTGGCGAACAGACAGTCATCACAGTGGACGCCAAGGCGGCTGGGAAAGGCAAGGTGACCTGCAGCGTGTGCACGCCCGAGGGGGCGGAGCTCGACGTGGACGTGGTTGAGAACGAGGACGGCACATTCGACATCTTCTACACGGCGCCGCAGCCTGGCGAGTATGTCATCTGCGTCCGTTTCGGAGGGGAGCACATCCCTAACAGTCCCTTCCAAGTCACGgCGCTGGAAGGAGCCCCATCAGACCAGCTCATGCAGCAGAGCCAAATGCCCCAGTACTACGCTCAACAGCCCTGGGCAACAGACAGACCAATGGGAATGAACGGTCTGGATGTGGCAGGGCTGAGGCCGTTTGACCTGGTCATCCCATTCACCATCCAGAAGGGAGAGATCACAGGTGAAGTCCGAATGCCATCGGGCACCGTGGCCAAGCCTGACATCACAGACAACAAGGACGGCACTGTTACGGTCAAGTACGCTCCCACTGAGGCCGGTCTGCACGAGATGGACATCAAATACGATGGCATCCACATCCCTGGAAGTCCCCTACAGTTCTACGTGGACTACATGAACAGTGGTAATGTCAGTGCGTATGGCCCAGGCCTGATCCATGGGACTGTCAACAAGCCTGCTGTCTTCACTGTTAACACCAAAGATGCTGGAGAGGGCGGTCTGTCTCTGGCCATCGAGGGTCCATCCAAGGCCGACATCAGCTGTGTTGACAACCAGGATGGGACGTGCACTGTGTCCTACCTGCCCGTCCTGCCTGGAGACTACAGCATCCTGGTCAAATACAACGACAAGCACATCCCCGGCAGCCCCTTCTCTGCTAGGATTACTGGTAATtgtgtgtgtgtgtgtgtgtgtgtaggaagtGCATTCACCGTGAAGGTAACAGGGGAGGGCAGGATGAAGGAGAGCATCACGAGGAAGAGGAGAGCAGCATCAGTCGCCAACGTCGGCAGCCAGTGTGACCTCAACCTCAAGATCCCAGAGATCAGCATAGCGGACATGACGGCTCAGGTCACCAGCCCATCTGGCCAGGTTCACAAGGCCGACATTATGGAGGGAGAGAACAACACCTACTGCATCCGCTTCGTCCCCACCGAGACGGGTGTGCACACCGTGTGTGTGAAATACAATGGCGTGCATGTGCCTGGGAGCCCGTTCCAGTTCACCGTGGGCCCCCTGGGAGAGGGCGGGGCTCATAAGGTCCGTGCTGGAGGGCCGGGCCTGGAGAGAGCAGAAGCTGGAGTACCAGCGGAGTTCAGTATCTGGACGAGGGAGGCTGGTGCCGGAGGTCTCAGTATTGCTGTGGAGGGGCCGAGCAAGGCTGAAATTGCCTTCGAGGACCGCAAGGACGGCTCCAGTGGAGTGTCCTACATCGTGCAGGAGCCTgGAGACTACGAGGTGTCCATCCGCTTCAACGACGAGCACATCCCCGACAGCCCCTTCGTGGTCCCTGTGGCCTCGCCGTCAGACGACGCCCGTCGCCTCACTGTTGCCAGTCTTCAGGAGTCGGGTTTGAAGGTGAACCAGCCAGCATCGTTCGCCGTCAGCCTGAACGGGGCGAAGGGCGTGATCGATGCAAAGGTCCACAGCCCATCTGGAGCTCTGGAGGAATGCTGCGTCACCGAGATCGACCAAGATAAGTACGCAGTCCGGTTCATCCCCAGAGAGAACGGTCTCTATCTCATTGATGTGAAGTTCAATGGAAGTCACATCCCTGGTAGTCCGTTTAAGATCCGAGTAGGAGAAACGGGCCAGGCTGGAGACCCTGGGATGGTGTCGGCCTACGGAGCAGGACTGGAGGGAGGCACCACAGGAAGTGCATGTGAATTTGTGGTGAACACGAGCAaggcaggccctggagctttgGCTGTGACCATCGACGGGCCCTCCAAGGTGAAGATGGACTGCGTGGAGTGCCCCGAGGGCTACAGGGTCACCTACACCCCAATGGCTCCTGGCAACTATCTCATTTCCATCAAGTATGGCGGTCCTTACCACATCGGCGGAAGCCCCTTCAAAGCCAAGATCACTGGTTCCAAGCTAGTGTCCAGCCACAGTATGCACGAAACCTCTTCTGTCATGGTTGACCCTGTGACCCGGGCCATCAGCTGCTCTCAGCAGGGTGCTCCCACCCAATCAGATGCCAGCAAGGTCGTCGCCAAGGGCCTGGGCCTGACCAAGGGCTTCGTCGGTCAGAAGAACAACTTCAGTGTTGACTGCAGCAAAGCAGgTCGTAACATGCTCCTGGTTGGTGTGGACGGTCCCAAGGTCCCCTGCGAGGAGATCCTAGTGAAACATTTGGGCAACCGCATGTACAACGTCAGCTACCAGCTGAAAGAGAAGGGCGAGTACATCCTGGTGGTGAAGTGGGGAGACGAACACATCCCTGGCAGCCCCTACCACATTACTGTCTAAAAGCCCGGCGCCACAATCAGCAAACATACCACTGTTTAATACAACTGAAATTCTATCCAGAGTCTAACCGATCATTGTTTACAAGTCCAAGTCCCTCCCAtgttacaaattaagatttctggcatttgtctttattttatttttttttgcgtcTTATTTTATAACTATTTAACCAACTAGAAAACTGTCACATCAGTGTTTACACTCAGCCAGATCTCTCTGTTTTTCAGACaagtgaatatttaaaaaaaaaaaaaaaaagcaacaccaTTCACTGTAACCCAGTCCAGAATCTCCCAAAGATGAATGCATGGAGACATGCAGTATTCCTCTCTTTCTGGATATTCGCTccatgtcttgttttattctTCTGCTAACTGTCGTCAATTTAGGGAGGAAAAAGATGcaccttttttttcattattatggTAAGCCGGACAATTGTGCCTTAggccttcatttttttttttttgttacattctTTTAGTCATGCACATAAGTGGACATGAGCAGATTTGTCTGAACTAGTGTACAGTGATAGGTTAGCTTAGTGTAGCAGCAGTCGAATTTTGGCCCCGCTGAGCCCAGCATTGGATGGAAGGTTACTGTTTACACTGGAGGAGCTACATACTTAACATACAGTAATAATGGATTTCGTTTTATATGAACAATCGCAGGACTTGGACCAAAGAGTGTCGCAAGCAATGTTCCTTTCTGAGCAATGGGTTTATATGCCCCACGACACACTTTGATGCGAGATCTTTAATTGTCAGTATACTAAAAGTCTAAAGAACGGCTCCGTCTGTTACTTAGAACTACAAATGCTCGGCACTGTTCCAGTCCGCTTCAGCATGTGGTTTTCATGATGCTTTTTAACCAACCCAGTTGTTTTACCTGCTGCTAGTGTGATCCAGTTTTAGGCACTGCTGTTCTTAAAGCCGTAATACGGATTAGAATATGGGAACGATTCCATAAGATTTAAAGATGAGGCCACATCCTATGTGAACAGGGAGGAGAAAGACACATTTCACAGTAGCTTCCTCGTGGTTTGTCGCACGTGCTCTCTCAACACCGCCGCTGGGAAACAAccgctttttttttgtgtgtgtgttttaatgtgacCTGCATATTCATTAGGTTGTAAAACTCTTTTGATACAGAAAGAATAACACCAACGTTACATGCGATGTGTTTTGTtgcggttcacctttaaatatGGAACTTTTTTTCATATCGatttaaaaggtttaaaaaggGAAGTTTCTGAAGTCGTGCTGGACAGAAGGGCTGAAGATGATGTTGTGGTTTGTCACGTCCTAAAAACATGATgaccaaataaaaaacaaaagagaacagatgatttgctttgttttctgcTCAGTGTTTgtatctccccccccctcccccctcaacCCCCTCCCTTTACCCTTCCAGCTTGCTTTGTGCATAgtatatctttcagaacaaaaAGAGAATCTTGTcctaaatattaaaaaaaaggctttaaaaCGTGTTTGTAAGACAGTATTTTGATACACAATAAAGTTGTCTAAGtatttttctgtcaa

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU74004 lncRNA downstream 64647 35245657 ~ 35246547 (-) True G55409
TU73995 lncRNA downstream 94575 35214088 ~ 35216619 (-) True G55400
TU73989 lncRNA downstream 134137 35176798 ~ 35177057 (-) True G55396
TU73966 lncRNA downstream 160571 35110380 ~ 35150623 (-) True G55376
TU73953 lncRNA downstream 210937 35098749 ~ 35100257 (-) True G55368
TU74123 lncRNA upstream 30778 35415007 ~ 35417799 (-) True G55496
XR_005639226.1 lncRNA upstream 48154 35432383 ~ 35448470 (-) True LOC120559180
TU74158 lncRNA upstream 101503 35485732 ~ 35634395 (-) True G55511
TU74137 lncRNA upstream 106874 35491103 ~ 35576323 (-) False G55505
TU74161 lncRNA upstream 110321 35494550 ~ 35503023 (-) True G55514
XM_039800713.1 mRNA downstream 7179 35298496 ~ 35304015 (-) True emd
XM_039800711.1 mRNA downstream 23984 35286360 ~ 35287210 (-) True mrpl49
XM_039800700.1 mRNA downstream 33340 35269898 ~ 35277854 (-) False LOC120559165
XM_039800693.1 mRNA upstream 490393 35874622 ~ 35898736 (-) False si:ch73-70k4.1
XM_039800694.1 mRNA upstream 502011 35886240 ~ 35898736 (-) False si:ch73-70k4.1
XM_039800695.1 mRNA upstream 502872 35887101 ~ 35898736 (-) False si:ch73-70k4.1
XM_039800692.1 mRNA upstream 502872 35887101 ~ 35898736 (-) False si:ch73-70k4.1
XM_039801534.1 mRNA upstream 868947 36253176 ~ 36270025 (-) False LOC120559648
XR_005639223.1 other downstream 33340 35269898 ~ 35277854 (-) True LOC120559165
XR_005639224.1 other downstream 33340 35269900 ~ 35277854 (-) False LOC120559165
XR_005639222.1 other downstream 33340 35269900 ~ 35277854 (-) False LOC120559165
TU73658 other downstream 1020307 34290406 ~ 34290887 (-) False ntsr1
TU73610 other downstream 1183699 34117904 ~ 34127495 (-) False G55124
TU74116 other upstream 20375 35404604 ~ 35409766 (-) True G55492
XR_005639221.1 other upstream 502872 35887101 ~ 35898736 (-) False si:ch73-70k4.1
XR_005639240.1 other upstream 1175160 36559389 ~ 36559959 (-) False LOC120559361
TU75206 other upstream 1297670 36681899 ~ 36724209 (-) True G56160
XR_005639341.1 other upstream 1342367 36726596 ~ 36744132 (-) False LOC120559655

Expression Profile


XM_039800461.1 Expression in all Baseline Samples

Bar chart with 13 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 250.
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XM_039800461.1 Expression in each Bioproject

Bar chart with 8 bars.
XM_039800461.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
End of interactive chart.