RNA id: XM_039800672.1


Basic Information

Item Value
RNA id XM_039800672.1
length 2906
RNA type mRNA
GC content 0.51
exon number 7
gene id LOC120559153
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 34887785 ~ 34899218 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agaatgTAGGCCATGCTCCTCTGGCCGTTATTTTGCGTATGTTACGTCTGACGTCAGCGCGTCTGCTTGCCGAATGTTTACATCCAGCAGTTCTTCTGTTCTTCTGACTGGATCTTCACAACAACAAAAGGCTGAACACGAGGAAACCCGCTAAGACAGAGAATATCAGTCGGCATTTTCACAAGTCAACATGGGGGGAGCTGTAAGTGCTGGTGAAGACAATGACGACTTGATTGACAACCTGAAGGAGGCTTACTACATCCGCTCAGACCTGGTGGAGCGGGCTTTCCGAGCTATCGACCGGGCTGACTATTACCTGGATGAATACCGTGACAATGCTTACAAGgaCTTGGCATGGCGGCATGGAAACATCCACCTATCTGCTCCGTGTATCTACTCTGAGGTGATGGAGGCTTTGGATCTCCACCCTTGCCTCTCCTTCCTCAACCTCGGGAGCGGGACTGGCTACCTCAGCACCATGGTCGGCCTCATATTGGGACCATTTGGAGTGAATCATGGAATAGAGTTACATGCAGATGTGATTGAGTATGCCTATCAGAAGCTTGACTCCTTCATCAAAACCAGCGACAGCTTTGACAAATTTGAATTCTGCGAGCCATCCTTTGTTGTGGGTAACTGCCTGGAGATTCCTCCAGAGAGCCGTCAGTATGACAGGGTGTACTGCGGGGCCGGGGTGCAGAAGGAGCATGAGGATTACATGAAGAACCTGCTCAAGGTGGGGGGCATCCTGGTGATGCCTCTTGAGGAAAAGTTGACCAAGATCACGCGCACAGGGCTGAACAGCTGGGAGACCAAAAAGATCATTTCTGTGTCCTTCGCTCCTCTGGTGCTGCCTAAACACATCACAAATGGCAAACCCAAGGCTGTCCCACTACCCAAGTATGAGGTACGGACGCTACAGGAGCTGGCCCGTATCTGCATCCGCCACACCCTCCGAGTGACCACCGACGGAGGAGACAGCCAATCGCGCGGCCGCGGTTCCTCGTTCAGCGTAGGCAGGGGTCTGGCGGTGGCCGGCCTCCACAAGTACGGCCCTCGCTTCAAGCGCAGACGCGTCCACCGGCGCCACTGCAACGCCCTGGTCCTGGCCACGCGTCAGGTGGTGGCCAGCAGTGGCTTCGGCCCCGCTCCCCTggacagcaacaacaaccaggGAGGAAGAgcggaggacgaggaggaggacgcGGCGGCGGGAGAGAGGGAGGCGAGGCGGCAGATGAGAGGGAGCAGGAGGGCggggagaggagcaggagggcCAGCGGCGGCAGCGGTGGTGGAGGAGGACGAGACGGTGGAGGAAGAAGACGAAGAGGAAGAgcacgaggaggaggaggaggagaaggagaccGGGGAGCTGCTCCGACCCCAGCCGGCCATCAACGTCCTCCGAGAGAGGATACTGGGCCTGCCGCTGCCCGAGCCACTGAAGATGTACCTGCTGTACTACAGAGAGAAATGAGCCACGGCCATGTTGGGAGTCAGAGCTCGGAGCTGAGCGCGACGACCGCACAGAGGCTGAAGTCTCTGTTACAACCCCCCCACCACCTGTACAAGGCAGGACTaggactagggctgggtaccgaattcaatactttttagccACGGACCGAATTCCCTCTGTAGTATcgaaaaaaaatgcctcgtcattcaataccaaatttcaatacctaaaggaataaatctcatcagcatcaGTGAGCCTATAAGCATGCGGCATGCTTccaccaagatctaataatgctgctgattggccgtctaacgttacacgtcgtagaggcaggcaggaaaaactctacgttacgcacagagacggggctcacgtggTAGGAGccgaaaaataaataaaaagatttgtgctgtaatgttggaatttatttttgttaaaatggatttttataaaattggtatcgaaaaaaagtttCGCTCGGGAGCCGGTATCGacgtcacggtattggtattggtaccGATATCGAagatttttgaacgatacccagccctaggcaGGACAACATGCCATCTACCTtactgaggggggggggggtgatctctttctctctcacctgCTCTCGTCTTCTCCATCATCCATTCTCTGTCCAACCCCCTTCTTTTTGCCCGGCTCCCACTGTTCTTTTACTGACTAATTTCCTGACACTATAAAAGCGTCATCCAATTCATCCAGTGGAGGGGGAAGTGGGGGTCAATGTTTCAGACAACCAAACAGTCACTGATGTAAGCTCTGTGTCTCCATTGAGGcgcaaaaaaatataaatagattTAAGTACGTAAAGTATACACAGTTTTATCGATTCGCTCTGCACCTCTGTATGTCCAACATGCCAATCAAGCCTTGCCTGACAACAGCTTAACAGTGGCCTGACTATCCTAGTAAAAGGCGATTTAGTGGTGCTGAGAAAAGAGAACCGTCATTGTTTAGGCTACAGCGGCAGACCAGACGTCGCACGTCGAGTTCAGACGCTGTAGCAGCAggcagagagagcagctcacCCAGAGACCAGAAGGCACAGGACTGTCCCAGCTCCTTTCTGTCCACTACTTGCAGCTGTGCCCCGAATTAGAGATTATACATTGATTGTATAAATCGCGTGGaactcgttttgtccacaaatGGTGGTGTGTATTCTCATCTAATGGGGATGGTCTGCTTCGAGAAAGGAAGACAGAGTGGGCCCAAAGATCAACTTTGTGAGGGAAGAAAATGTGCATTCAAAGAgagatttctttctttcactatATCCTATTCAATTATATTATAGCTAGAGCTAGTGACCAAGATGGTGTGATGGTTGTGATTATTTCCACTGATTTCCAAATAAAAGGGGTAGGTTTGTCTTGAAGCCTCAGTCCATTAAATAATGTAACTTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73923 lncRNA downstream 2195 34884408 ~ 34885590 (-) True G55343
TU73906 lncRNA downstream 9065 34830369 ~ 34878720 (-) True G55328
TU73741 lncRNA downstream 330095 34557181 ~ 34557690 (-) True G55203
TU73721 lncRNA downstream 480615 34380065 ~ 34407170 (-) True G55190
TU73927 lncRNA upstream 163579 35062794 ~ 35066042 (-) False G55346
TU73929 lncRNA upstream 163579 35062794 ~ 35077065 (-) True G55346
TU73945 lncRNA upstream 169800 35069015 ~ 35085198 (-) True G55360
TU73928 lncRNA upstream 175362 35074577 ~ 35077065 (-) False G55346
TU73953 lncRNA upstream 199534 35098749 ~ 35100257 (-) True G55368
XM_039800655.1 mRNA downstream 45499 34790613 ~ 34842286 (-) False plagl2
XM_039800653.1 mRNA downstream 45499 34790613 ~ 34842286 (-) True plagl2
XM_039800654.1 mRNA downstream 46145 34790613 ~ 34841640 (-) False plagl2
XM_039799951.1 mRNA downstream 512282 34333598 ~ 34375503 (-) False slco4a1
XM_039800460.1 mRNA upstream 7222 34906437 ~ 35034952 (-) True myt1b
XM_039800706.1 mRNA upstream 179584 35078799 ~ 35086447 (-) True tmed4
XM_039800709.1 mRNA upstream 265528 35164743 ~ 35166257 (-) True cfap126
XM_039800689.1 mRNA upstream 363749 35262964 ~ 35266073 (-) False crebzf
XM_039800690.1 mRNA upstream 363749 35262964 ~ 35266073 (-) True crebzf
TU73658 other downstream 596898 34290406 ~ 34290887 (-) False ntsr1
TU73607 other downstream 760290 34024018 ~ 34127495 (-) False G55124
TU73610 other downstream 760290 34117904 ~ 34127495 (-) False G55124
TU73620 other downstream 794667 34087970 ~ 34093118 (-) True G55131
TU73247 other downstream 2000495 32880193 ~ 32887290 (-) True G54834
XR_005639223.1 other upstream 370683 35269898 ~ 35277854 (-) True LOC120559165
XR_005639224.1 other upstream 370685 35269900 ~ 35277854 (-) False LOC120559165
XR_005639222.1 other upstream 370685 35269900 ~ 35277854 (-) False LOC120559165
TU74116 other upstream 505389 35404604 ~ 35409766 (-) True G55492
XR_005639221.1 other upstream 987886 35887101 ~ 35898736 (-) False si:ch73-70k4.1

Expression Profile