RNA id: TCONS_00000621


Basic Information

Item Value
RNA id TCONS_00000621
length 744
lncRNA type retained_intron
GC content 0.42
exon number 7
gene id XLOC_000364
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 30723380 ~ 30735478 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGCTTGCACCGCTTGATCAAAAATTAAATCAGACGTTGGAGCAATTCATATATCACAGTTACGTTTGTTTGAGTTTCGTTACGATCGTGCTCAGCTGGATGTCTTTTTAAAGATGGGAGACATCGCAAAGATTCATATAACTCCCGAGACTCCTGCTAGACCTACTATCCTGAACCCGTTTGAGAGCCCAAACGACTATCACCGTCTGCATGAGTCTGTGGTGCCCAGTCCGTCTGTCTTTAAAAGCTGTAAGAGCTCGTCAGCGACACCAGCTAAGTTCAAATGGTCTATTGATGAAATGGCAAATTTGCTTCCTGTGGAAATAGACCCAGAGGACATTCACCGCCAGGCTGTGTTTTTTAGCCAAGCCAGGTATGTATTCCTGTGTTTACAATAATGTTAATTTGTTTGTAAAGATTTGGTTAGATGTCTAACTTAAATGGGTTGTAATGCATTAAGGGCGGATTCTGAGATTGAGGAAAAACGCCAACATGCTATTGAACAGtttttcactAAAGGTGCAATTGTTCCCTCTCCATGGGGACCACTAACATCAAAACAATCAATGAAACTGCCGCATCATAAAAGTCCCTTGTCCCCACTGGTAACAGAGGAAATTCAGCCACCAAAGAAAATAAATGCCATCTGTCAGACAGTCCTGTCTCTACCTGTGGACTTCAATCTTGAGAAAGTTCtggGTGATTACTATAAGACTGAAGAGTTAACAGAGCAGGTTCAGGAGA

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0032880 regulation of protein localization biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0032147 activation of protein kinase activity biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0007049 cell cycle biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060236 regulation of mitotic spindle organization biological_process
GO:0051301 cell division biological_process
GO:0007088 regulation of mitotic nuclear division biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0072687 meiotic spindle cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0019901 protein kinase binding molecular_function
GO:0043169 cation binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-041114-165 Predicted to enable protein kinase binding activity. Predicted to be involved in activation of protein kinase activity; regulation of cell cycle process; and regulation of protein localization. Predicted to act upstream of or within cell division. Predicted to be active in cytoplasm and nucleus. Is expressed in alar plate midbrain region; nervous system; optic vesicle; pharyngeal arch; and yolk syncytial layer. Orthologous to human BORA (BORA aurora kinase A activator).

Ensembl:

ensembl_id ENSDART00000143897

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003081 lncRNA upstream 643851 30074635 ~ 30079529 (+) False XLOC_000358
TCONS_00002844 lncRNA upstream 643851 30074710 ~ 30079529 (+) False XLOC_000358
TCONS_00002843 lncRNA upstream 643851 30074734 ~ 30079529 (+) True XLOC_000358
TCONS_00000607 lncRNA upstream 913884 29806494 ~ 29809496 (+) True XLOC_000355
TCONS_00000598 lncRNA upstream 1214907 29507647 ~ 29508473 (+) True XLOC_000350
TCONS_00000626 lncRNA downstream 126350 30853969 ~ 30857925 (+) False XLOC_000365
TCONS_00002845 lncRNA downstream 127771 30855390 ~ 30859524 (+) True XLOC_000365
TCONS_00000630 lncRNA downstream 326796 31054415 ~ 31055182 (+) False XLOC_000367
TCONS_00003082 lncRNA downstream 413500 31141119 ~ 31144527 (+) False XLOC_000369
TCONS_00000636 lncRNA downstream 413698 31141317 ~ 31144527 (+) True XLOC_000369
TCONS_00000620 mRNA upstream 168407 30551777 ~ 30554973 (+) True XLOC_000363
TCONS_00000619 mRNA upstream 285344 30422143 ~ 30438036 (+) True XLOC_000362
TCONS_00000614 mRNA upstream 412691 30083578 ~ 30310689 (+) False XLOC_000359
TCONS_00000613 mRNA upstream 412691 30083578 ~ 30310689 (+) False XLOC_000359
TCONS_00000615 mRNA upstream 412691 30100257 ~ 30310689 (+) False XLOC_000359
TCONS_00000627 mRNA downstream 218612 30946231 ~ 30974165 (+) False XLOC_000366
TCONS_00000629 mRNA downstream 291546 31019165 ~ 31064706 (+) False XLOC_000367
TCONS_00000631 mRNA downstream 327296 31054915 ~ 31063778 (+) False XLOC_000367
TCONS_00000633 mRNA downstream 383198 31110817 ~ 31130222 (+) False XLOC_000368
TCONS_00000634 mRNA downstream 384817 31112436 ~ 31130222 (+) False XLOC_000368
TCONS_00000618 other upstream 495875 30227391 ~ 30227505 (+) True XLOC_000361
TCONS_00000617 other upstream 557315 30165953 ~ 30166065 (+) True XLOC_000360
TCONS_00000608 other upstream 863007 29831759 ~ 29860373 (+) False XLOC_000356
TCONS_00000579 other upstream 1643044 29068662 ~ 29080336 (+) False XLOC_000337
TCONS_00000565 other upstream 2721443 27977370 ~ 28001937 (+) False XLOC_000332
TCONS_00000628 other downstream 228306 30955925 ~ 30965004 (+) True XLOC_000366
TCONS_00000632 other downstream 329621 31057240 ~ 31063850 (+) True XLOC_000367
TCONS_00000645 other downstream 979050 31706669 ~ 31722875 (+) True XLOC_000376
TCONS_00000653 other downstream 1323994 32051613 ~ 32065030 (+) False XLOC_000384
TCONS_00000657 other downstream 1786370 32513989 ~ 32514104 (+) True XLOC_000386

Expression Profile

//