RNA id: TCONS_00008704


Basic Information

Item Value
RNA id TCONS_00008704
length 1152
lncRNA type intronic
GC content 0.48
exon number 2
gene id XLOC_003736
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 44384924 ~ 44391541 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCGGCCGGTCAGCATCACCAGGTCTTTCCGCATCCATGTGGGAGATTCGCAATCAGTCTGAAGATCCACACCGGAGCAACCTGAAGATGCAGAACACAGAAGTCCAGTATGGTGGAGCGATAAAGGATATCAACATGATCTACAACACAGGGAGCcaatatgacacacacacacacacacacacacacacacacacacacacacacacacacacacacatcccattGCAATAATATAGGATATTATACTTGCTTACCTGTCCTTCTTCTTTCTCTTTGTGTGTCTTTTTACAGGTACATGCATTCAATATGGTGTCAGAGaatgaacacacaacacacacatgcgGGTAAACTACATGTGTGAACCAGAGCTTAACATCCGGAACAGAACCAGGAGATAAAGTTACTGTAcattcacattctctctctctccctcacacacacacacacacacacacacatgcagctaTTCACCATGCACAAGTTAATGCAGGATCAATAAAAATTAACACTGAACCATAAAACAAGAAGATCTTTAGTTCCGCTGGGTCAGTGACAGGTGAGCGTTCCACTGGGTTATTTACAGTTGAGTTAGAGTTGGGTTAGGGTTTTTGACAGGTGCTCATTTCTCTAGGTTATCGACTGGTGAGTTCCTCTGGGTTATCGACAGCTGCTTGTTGTTCTGGGTTATCGTCAGGTGCGCATTTCTCTTGTTTTTTGACAGGTGAGCATACCTTTGGGCTATTGACAGGTGAGTGTCTTACTgggttttatctgtttttatcaaCAGGTAAGTGTTTCACTTGGTTAATGACAAGTATTCATTTCACTGGGTCACTGACAGGCGAGTGTTCCACTGGGTAGTCGTCAGGCGAGTGTTCCGCTGGGTAATCGTCAGGCGAGTGTTCCGCTGGGTAATCGTCAGGGGAGTGTTCCGCTGGGTAATCGTCAGGCGAGTGTTCCTCTGGGTAATCGTCAGGGGAGTGTTCCGCTGGGTAGTCGTCAGGCGAGTGTTCCGCTGGGTAATCGTCAGGCGAGTGTTCCACTGGGTAGTCGTCAGGCGAGTGTTCCGCTGGGTAATCGTCAGGCGAGTGTTCCGCTGGGTAATCGTCAGGGGAGTGTTCCGCTGGGTAATCGTCAGGCGAGTGTTCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008703 lncRNA upstream 10616 44369127 ~ 44375182 (+) True XLOC_003735
TCONS_00008432 lncRNA upstream 50476 44324761 ~ 44335322 (+) False XLOC_003732
TCONS_00008431 lncRNA upstream 50476 44324761 ~ 44335322 (+) False XLOC_003732
TCONS_00008701 lncRNA upstream 67664 44317203 ~ 44318134 (+) False XLOC_003731
TCONS_00008705 lncRNA downstream 2794 44394335 ~ 44399370 (+) False XLOC_003737
TCONS_00008434 lncRNA downstream 3876 44395417 ~ 44396163 (+) True XLOC_003737
TCONS_00008706 lncRNA downstream 56147 44447688 ~ 44450363 (+) True XLOC_003738
TCONS_00008707 lncRNA downstream 147963 44539504 ~ 44542998 (+) True XLOC_003740
TCONS_00008708 lncRNA downstream 193873 44585414 ~ 44587921 (+) False XLOC_003741
TCONS_00007208 mRNA upstream 22766 44356707 ~ 44363032 (+) True XLOC_003734
TCONS_00007207 mRNA upstream 22767 44356504 ~ 44363031 (+) False XLOC_003734
TCONS_00007202 mRNA upstream 76766 44300548 ~ 44309032 (+) False XLOC_003729
TCONS_00007199 mRNA upstream 247527 44135351 ~ 44138271 (+) True XLOC_003726
TCONS_00007197 mRNA upstream 598645 43751263 ~ 43787153 (+) True XLOC_003721
TCONS_00007209 mRNA downstream 110869 44502410 ~ 44515880 (+) False XLOC_003739
TCONS_00007210 mRNA downstream 112233 44503774 ~ 44524932 (+) True XLOC_003739
TCONS_00007213 mRNA downstream 156668 44548209 ~ 44603789 (+) False XLOC_003741
TCONS_00007212 mRNA downstream 156668 44548209 ~ 44603789 (+) False XLOC_003741
TCONS_00007211 mRNA downstream 156668 44548209 ~ 44603789 (+) False XLOC_003741
TCONS_00007206 other upstream 50018 44335666 ~ 44335780 (+) True XLOC_003733
TCONS_00007205 other upstream 50476 44328774 ~ 44335322 (+) True XLOC_003732
TCONS_00007204 other upstream 50887 44324761 ~ 44334911 (+) False XLOC_003732
TCONS_00007203 other upstream 59506 44324761 ~ 44326292 (+) False XLOC_003732
TCONS_00007198 other upstream 360920 44024762 ~ 44024878 (+) True XLOC_003725
TCONS_00007223 other downstream 459933 44851474 ~ 44851593 (+) True XLOC_003747
TCONS_00007247 other downstream 996657 45388198 ~ 45393530 (+) False XLOC_003764
TCONS_00007249 other downstream 996669 45388210 ~ 45392663 (+) False XLOC_003764
TCONS_00007251 other downstream 1000670 45392211 ~ 45394780 (+) False XLOC_003764

Expression Profile

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