RNA id: XM_039800699.1


Basic Information

Item Value
RNA id XM_039800699.1
length 1336
RNA type mRNA
GC content 0.43
exon number 8
gene id LOC120559165
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 35269896 ~ 35277854 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTTTTTACCCATGTGACACAGTTTTTTAGGGGATTTCCTACTGCTGTTGAATTAATTTAGTTGTTTACAATTTTattctaaaaaaaatacagtattagcTATATTTAATAAAACTATGTAATAGTCCGCGTTATAATGCATTCGACATTGGTGGTCTTGGGGTATGTCGCCGCCTTCATGACCCCAGGGCTGGGCTGTCTTCCAAAGGAATATGTATCAAGGGATGGGAAGTGCTGTCCGATGTGCAACGAAGGTACAGTTGTTAGAAGAGACTGTACACTAAAGTCAGGCACACGGTGCAGCTCCTGTGTAAATGGGACTTTTATGAACAAACCCAACGGCCTGAGTAACTGTATCCCCTGCATCGTCTGTGACCAAGGTCATGGTCTCTTTGTCAAACAGGAGTGCACAGCAACAACGAACACAGTCTGTGATGTTTCAAGTGGGTGTTTCTGCAAAGAGTTGATGGATGATACAGGATGTAGTTTggcacaaaaacatacacagtgTACACCTGGTGAGAGGATAAAAGAACTTGGAACCAGGACAAAGGACACAGTGTGTGAACAGTGTCAGCCAGGCTATTTTTCAAAGGATGGTGTGAATTGCACCGATTGGACTATTTGCTTAGATACCCAAGTACAGGTCACAGAAGGAAGCACGAGCACTGATGTTGTCTGTGGAACTGCTTCAAGACAGCGTTATTGCCTTTATATACCTTTATCATTATTCACATCCGCATTAATACTCGCTGTGCTTGTGATCACAGaaCTACACCCACAACCGTATCAGCGCATAAAAGAGGCTCGTGGTCTGACATTGCTTGCTTGTGGAGATTACCGTATAGTTAACCGATACTGCTAGATCAAGTAATTGAAGTTACCTTGCATTGTCATCAAAAAGttaaggacaagggcagactgcagcgcaTCATCCACTCTGCTGAGagggtgattggctgcaatctgccatCTTTCCAGGACCTGTATGCCTCCAGGAAAGATTTTAGCTGATCCCTCTCACCCCACAACCTcccccctctggcaggaggctgcgctccatcaggaccaaaagcTCACACCGAAAAACAGTTTCTTCCCCCCAGCAGTAAGACTCACCAACAAGGCCCCTGGCCCCCACTGACTCTTAACCCCCCCATCCCTAGTCACTCCACTTTGCACTAACCTTCATCCTGGACTGTTACAACTGCCCATATATTCTTTGCAAATTTTACATTCAACccatttaaccttttttttcttatgcaacagttactttgtatgtatatatttgtttttctgtatgtgttgtttacttaatattaatgtttaatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74004 lncRNA downstream 23349 35245657 ~ 35246547 (-) True G55409
TU73995 lncRNA downstream 53277 35214088 ~ 35216619 (-) True G55400
TU73989 lncRNA downstream 92839 35176798 ~ 35177057 (-) True G55396
TU73966 lncRNA downstream 119273 35110380 ~ 35150623 (-) True G55376
TU73953 lncRNA downstream 169639 35098749 ~ 35100257 (-) True G55368
TU74123 lncRNA upstream 137153 35415007 ~ 35417799 (-) True G55496
XR_005639226.1 lncRNA upstream 154529 35432383 ~ 35448470 (-) True LOC120559180
TU74158 lncRNA upstream 207878 35485732 ~ 35634395 (-) True G55511
TU74137 lncRNA upstream 213249 35491103 ~ 35576323 (-) False G55505
TU74161 lncRNA upstream 216696 35494550 ~ 35503023 (-) True G55514
XM_039800657.1 mRNA downstream 467 35266701 ~ 35269429 (-) True las1l
XM_039800689.1 mRNA downstream 3823 35262964 ~ 35266073 (-) False crebzf
XM_039800690.1 mRNA downstream 3823 35262964 ~ 35266073 (-) True crebzf
XM_039800709.1 mRNA downstream 103639 35164743 ~ 35166257 (-) True cfap126
XM_039800706.1 mRNA downstream 183449 35078799 ~ 35086447 (-) True tmed4
XM_039800711.1 mRNA upstream 8506 35286360 ~ 35287210 (-) True mrpl49
XM_039800713.1 mRNA upstream 20642 35298496 ~ 35304015 (-) True emd
XM_039800461.1 mRNA upstream 33340 35311194 ~ 35384229 (-) True flna
XM_039800693.1 mRNA upstream 596768 35874622 ~ 35898736 (-) False si:ch73-70k4.1
XM_039800694.1 mRNA upstream 608386 35886240 ~ 35898736 (-) False si:ch73-70k4.1
TU73658 other downstream 979009 34290406 ~ 34290887 (-) False ntsr1
TU73607 other downstream 1142401 34024018 ~ 34127495 (-) False G55124
TU73610 other downstream 1142401 34117904 ~ 34127495 (-) False G55124
TU73620 other downstream 1176778 34087970 ~ 34093118 (-) True G55131
TU73247 other downstream 2382606 32880193 ~ 32887290 (-) True G54834
TU74116 other upstream 126750 35404604 ~ 35409766 (-) True G55492
XR_005639221.1 other upstream 609247 35887101 ~ 35898736 (-) False si:ch73-70k4.1
XR_005639240.1 other upstream 1281535 36559389 ~ 36559959 (-) False LOC120559361
TU75206 other upstream 1404045 36681899 ~ 36724209 (-) True G56160
XR_005639341.1 other upstream 1448742 36726596 ~ 36744132 (-) False LOC120559655

Expression Profile