RNA id: XM_039800709.1


Basic Information

Item Value
RNA id XM_039800709.1
length 738
RNA type mRNA
GC content 0.51
exon number 5
gene id cfap126
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 35164743 ~ 35166257 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTTCCTGTCTAGCCGTTCCTCAACGGAAAGGAGTAAAGGAGAAGTCAGTTTGATGCGTTGCTATGCAACGAGTCAACAAAAACAGACGCGGACCTGTAGTGTAGACGGAGGCAGAAATGTTCAGTTACTCGGCAAACCAGTATGACAGTGCATTCAAGCCGCGTCGACTGCAGAACTGGTGCGAGACTAACGTTAAGCACTTTAAAGAGagaccCACTGCACATGAGGGCCACACCACCTTTATTGCCGATGAAAGAGGACATCTGCTCCCAGGAGTGGTGAAGAAGGGCAGTGCATGGACAGACTTTAAGGGGACCTGGGATCTACCTGCTCGTATCCCAGCCCACCGCATAAACCCTACAGGCCGCTCTGTGGATGGTCTCAACATGCTGAAGTCGTGGGGCATTGACCCACAGCACACTGGCAAATCTCAGCCACACAGAGGCAGCAAAGACACAGATAGGCTGCAGGATGTTGGCCAGCAGAACAATGAGGATGTACAGCAGGACAGTGCTGCCCTTTGTCCTGCAGCTGGGCCAGTACTCGACAGCAGGCCCGACACTGGCAAGGTGAGACCAGCCAGCAATGTATCAGCAGAAGCAGCCAGCCAAGAAGGGCCGACCTCCTCTGAGCATGGGCACAAAGATGAACAGCAAGAGCAGTGAACTTCTTCATTTCATTTGTggtggatgaaaaaaaaaaaaaatacccacaAAATTAAATGCCTGTCAACTGTC

Function

GO:

id name namespace
GO:0022412 cellular process involved in reproduction in multicellular organism biological_process
GO:0019538 protein metabolic process biological_process
GO:0007281 germ cell development biological_process
GO:0006508 proteolysis biological_process
GO:0003006 developmental process involved in reproduction biological_process

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko05164 Influenza A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73966 lncRNA downstream 14120 35110380 ~ 35150623 (-) True G55376
TU73953 lncRNA downstream 64486 35098749 ~ 35100257 (-) True G55368
TU73945 lncRNA downstream 79545 35069015 ~ 35085198 (-) True G55360
TU73929 lncRNA downstream 87678 35062794 ~ 35077065 (-) True G55346
TU73928 lncRNA downstream 87678 35074577 ~ 35077065 (-) False G55346
TU73989 lncRNA upstream 10541 35176798 ~ 35177057 (-) True G55396
TU73995 lncRNA upstream 47831 35214088 ~ 35216619 (-) True G55400
TU74004 lncRNA upstream 79400 35245657 ~ 35246547 (-) True G55409
TU74123 lncRNA upstream 248750 35415007 ~ 35417799 (-) True G55496
XR_005639226.1 lncRNA upstream 266126 35432383 ~ 35448470 (-) True LOC120559180
XM_039800706.1 mRNA downstream 78296 35078799 ~ 35086447 (-) True tmed4
XM_039800460.1 mRNA downstream 129791 34906437 ~ 35034952 (-) True myt1b
XM_039800673.1 mRNA downstream 265525 34887785 ~ 34899218 (-) True LOC120559153
XM_039800672.1 mRNA downstream 265528 34887785 ~ 34899215 (-) False LOC120559153
XM_039800653.1 mRNA downstream 322457 34790613 ~ 34842286 (-) True plagl2
XM_039800689.1 mRNA upstream 96707 35262964 ~ 35266073 (-) False crebzf
XM_039800690.1 mRNA upstream 96707 35262964 ~ 35266073 (-) True crebzf
XM_039800657.1 mRNA upstream 100444 35266701 ~ 35269429 (-) True las1l
XM_039800699.1 mRNA upstream 103639 35269896 ~ 35277854 (-) False LOC120559165
XM_039800700.1 mRNA upstream 103641 35269898 ~ 35277854 (-) False LOC120559165
TU73658 other downstream 873856 34290406 ~ 34290887 (-) False ntsr1
TU73607 other downstream 1037248 34024018 ~ 34127495 (-) False G55124
TU73610 other downstream 1037248 34117904 ~ 34127495 (-) False G55124
TU73620 other downstream 1071625 34087970 ~ 34093118 (-) True G55131
TU73247 other downstream 2277453 32880193 ~ 32887290 (-) True G54834
XR_005639223.1 other upstream 103641 35269898 ~ 35277854 (-) True LOC120559165
XR_005639224.1 other upstream 103643 35269900 ~ 35277854 (-) False LOC120559165
XR_005639222.1 other upstream 103643 35269900 ~ 35277854 (-) False LOC120559165
TU74116 other upstream 238347 35404604 ~ 35409766 (-) True G55492
XR_005639221.1 other upstream 720844 35887101 ~ 35898736 (-) False si:ch73-70k4.1

Expression Profile