RNA id: XM_039800711.1



Basic Information


Item Value
RNA id XM_039800711.1
length 851
RNA type mRNA
GC content 0.56
exon number 1
gene id mrpl49
representative True

Chromosome Information


Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 35286360 ~ 35287210 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


gaagttCTTCACTGTTTCCGGTCCGGCTGCTTTACATGCTAAACAACATGGCGGCCTGCTTTACCCTTCGGTCCGCCGTGCTCCGCGGGCTGCTGCGAGGAGCTCTCAGCCCGGCACGTCCTGCCGCGGCTGTCGGGCTTAGGTTTGTTTGTAACGCTGCTCCAGAAGAAAACAAGAGGGCCATTATAGGCCTGTCAGAATCTACGGACGAATACAAGTTCGTAGAGCGGCTCATCCCGCCGTCACGGGTCCCCGCTCCGCCCAAGCACGCCGGTCCTACCCCGTCTGGCTGGACCCCTCCGGCAGACTCCCCGCCGCCTCTGCCCTACATGATCCGCCGCTCCCGCATGCACAACATCCCGGTTTACTCGGACCTGACCCACGGCAGCCGCAGGACGACGCTCGTACGGAAAGTGGAGGGGGACATCTGGGCCCTGGAGAAGGACGTGAAGCAATTTCTTAAGGAGGTGACGGGGAAAGAGCTGCCCACACAGGTCAACGAGGTCACCATGACGttaaaggtcaaaggtcacttcGATACCGAGCTGAAGGAATGGCTGGCCGGCAAAGGCTTCTGACTGCGGGGCTCCTCAATCACGCTCAGGGGGCAGAGCTGTCCGTGTGAAGGGGGGAGATGGAGAGGACCACCGCTGGCAGTTCAACCCCTGGAAACATTGGCCTGCAGTACTTTAAACCCTATTTCAATCCACATGGATGGACAGCTTTGATTACTGCCAGTTTATTGAACTTTCTTTGGACACCAGATATGTTAGTTATGGGATCAACCGGTGTACATACGtgtatgtaataatgtaatgatGGCACATTAAATATAAAAGCATAGCCCACTT

Function


GO: NA

KEGG:

id description
K17430 MRPL49, NOF1; large subunit ribosomal protein L49

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU74004 lncRNA downstream 39813 35245657 ~ 35246547 (-) True G55409
TU73995 lncRNA downstream 69741 35214088 ~ 35216619 (-) True G55400
TU73989 lncRNA downstream 109303 35176798 ~ 35177057 (-) True G55396
TU73966 lncRNA downstream 135737 35110380 ~ 35150623 (-) True G55376
TU73953 lncRNA downstream 186103 35098749 ~ 35100257 (-) True G55368
TU74123 lncRNA upstream 127797 35415007 ~ 35417799 (-) True G55496
XR_005639226.1 lncRNA upstream 145173 35432383 ~ 35448470 (-) True LOC120559180
TU74158 lncRNA upstream 198522 35485732 ~ 35634395 (-) True G55511
TU74137 lncRNA upstream 203893 35491103 ~ 35576323 (-) False G55505
TU74161 lncRNA upstream 207340 35494550 ~ 35503023 (-) True G55514
XM_039800699.1 mRNA downstream 8506 35269896 ~ 35277854 (-) False LOC120559165
XM_039800700.1 mRNA downstream 8506 35269898 ~ 35277854 (-) False LOC120559165
XM_039800698.1 mRNA downstream 8506 35269898 ~ 35277854 (-) False LOC120559165
XM_039800701.1 mRNA downstream 8506 35269900 ~ 35277854 (-) False LOC120559165
XM_039800697.1 mRNA downstream 8506 35269901 ~ 35277854 (-) False LOC120559165
XM_039800713.1 mRNA upstream 11286 35298496 ~ 35304015 (-) True emd
XM_039800461.1 mRNA upstream 23984 35311194 ~ 35384229 (-) True flna
XM_039800693.1 mRNA upstream 587412 35874622 ~ 35898736 (-) False si:ch73-70k4.1
XM_039800694.1 mRNA upstream 599030 35886240 ~ 35898736 (-) False si:ch73-70k4.1
XM_039800695.1 mRNA upstream 599891 35887101 ~ 35898736 (-) False si:ch73-70k4.1
XR_005639223.1 other downstream 8506 35269898 ~ 35277854 (-) True LOC120559165
XR_005639224.1 other downstream 8506 35269900 ~ 35277854 (-) False LOC120559165
XR_005639222.1 other downstream 8506 35269900 ~ 35277854 (-) False LOC120559165
TU73658 other downstream 995473 34290406 ~ 34290887 (-) False ntsr1
TU73607 other downstream 1158865 34024018 ~ 34127495 (-) False G55124
TU74116 other upstream 117394 35404604 ~ 35409766 (-) True G55492
XR_005639221.1 other upstream 599891 35887101 ~ 35898736 (-) False si:ch73-70k4.1
XR_005639240.1 other upstream 1272179 36559389 ~ 36559959 (-) False LOC120559361
TU75206 other upstream 1394689 36681899 ~ 36724209 (-) True G56160
XR_005639341.1 other upstream 1439386 36726596 ~ 36744132 (-) False LOC120559655

Expression Profile