RNA id: XM_039800775.1


Basic Information

Item Value
RNA id XM_039800775.1
length 805
RNA type mRNA
GC content 0.47
exon number 4
gene id her3
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 25866763 ~ 25867978 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCAAGGAAACCAGAAAAGGACTAACAGAATGGTGGCGACGACAGACTGCATAGAAAAGTCCAAACCCATCGCTGGAAACAGGgtatCCAAACCACTCATGGAAAAGAAACGAAGAGCTCGCATTAACAAGTGTTTGGACCAGTTAAAATCTCTTCTGGAGAGCTACTACAGCAGTAGTaTTCGAAAGCGCAAACTGGAAAAGGCCGACATCTTGGAGCTTACTGTGAAACATCTAAGGAACATCCAAAAGATCCAGTGTTGCACTGCCGCTGCTTCCGAGTTCTCTGATTATCAAACTGGTTTTCGCAGTTGCATGGCAAACGTCAACCAGTATTTGCTGATGGCCGACAACTTGAACGGGAGCGACAGCTGGATGTTATCGCAGCTTTCCAGTAAACTCTGTCGCTCTCGGGGACGGGAGGAAGTCTTCAGCACCAAGGACAGCAGCCGGGGCCAAGCAGCAGAGACACAGGATGAGGTGCGGATACTTCTTCCATCGGCAGCTGGGCCTGAGGAAAGAAAAACGGCCAAATCTAAAACTCTGAAACCGCTTAGTGCAAGCACGTCTCCTTGTTTACCGAGCGAAGACGCACGACAGTCATCTAGAACCAAACTGACTGTCCCTGTTGCGGCACTCAGACAAAGTACTCATGAAAAAAGTTTAAGTAACAAGATATGTCCCCCTGTCAGTTACAGGAATGAAGTTGCAAAACCTCAGCACAATGTCTGGCGGCCTTGGTAAAACTGTAGATATCCTAATTCATAGTTTGGTTGAATGTTTATTATTGCACTGTATAGATTACA

Function

GO: NA

KEGG:

id description
K09088 HES3; hairy and enhancer of split 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70912 lncRNA upstream 55716 25809713 ~ 25811047 (+) True G53056
XR_005639163.1 lncRNA upstream 851365 25009989 ~ 25015398 (+) True LOC120558677
TU70673 lncRNA upstream 906660 24959816 ~ 24960103 (+) True G52892
TU70634 lncRNA upstream 921612 24940795 ~ 24945151 (+) False LOC120559118
XR_005639231.1 lncRNA downstream 127255 25995233 ~ 25997094 (+) True LOC120559215
TU70971 lncRNA downstream 203607 26071585 ~ 26076664 (+) False G53096
TU70974 lncRNA downstream 203607 26071585 ~ 26076664 (+) True G53096
TU70988 lncRNA downstream 228381 26096359 ~ 26099635 (+) True G53109
TU71139 lncRNA downstream 457243 26325221 ~ 26325468 (+) True G53221
XM_039800772.1 mRNA upstream 8882 25853734 ~ 25857881 (+) True LOC120559217
XM_039800774.1 mRNA upstream 26331 25834546 ~ 25840432 (+) True LOC120559220
XM_039800773.1 mRNA upstream 36861 25823768 ~ 25829902 (+) True LOC120559218
XM_039801164.1 mRNA upstream 47433 25815356 ~ 25819330 (+) True LOC120559463
XM_039801246.1 mRNA upstream 60602 25794731 ~ 25806161 (+) True rer1
XM_039800766.1 mRNA downstream 133314 26001292 ~ 26050486 (+) False espn
XM_039800763.1 mRNA downstream 133315 26001293 ~ 26050486 (+) True espn
XM_039800767.1 mRNA downstream 133315 26001293 ~ 26050486 (+) False espn
XM_039800765.1 mRNA downstream 133315 26001293 ~ 26050486 (+) False espn
XM_039799745.1 mRNA downstream 183559 26051537 ~ 26071198 (+) True arhgef16
TU70864 other upstream 118446 25743610 ~ 25748317 (+) True tprg1l
TU70648 other upstream 909433 24953442 ~ 24957330 (+) True G52871
TU70197 other upstream 2101610 23759234 ~ 23765153 (+) False tmem201
TU69870 other upstream 3019825 22842066 ~ 22846938 (+) False lamtor5
XR_005639388.1 other upstream 3304242 22562154 ~ 22562521 (+) True LOC120559933
TU70970 other downstream 203607 26071585 ~ 26076664 (+) False G53096
TU71155 other downstream 484482 26352460 ~ 26353463 (+) True G53232
XR_005639211.1 other downstream 511698 26379676 ~ 26382295 (+) True LOC120559113
XR_005639212.1 other downstream 511698 26379676 ~ 26382295 (+) False LOC120559113
TU71269 other downstream 932118 26800096 ~ 26800746 (+) True G53305

Expression Profile