RNA id: XM_039800820.1


Basic Information

Item Value
RNA id XM_039800820.1
length 6291
RNA type mRNA
GC content 0.43
exon number 5
gene id prdm2a
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 25174578 ~ 25184231 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gCCATAATTTTGTTGGTACattggggaagaaaaaaaaaaacaacacaactgaACACAACCTGCAGGAGACGAATAAACCGTTCTACGGCAGTTTGTTTGGTTAACGCAAAAAGAGAATCCTGTGTGTTCATCTGTCAAACAAAACATGTCTTCAACGTTGTACTGACCATTAAAATGGTGTGACATCTGTCAAAAGTCTTGTGTGACAGACTTCCTTCTGTGAGCTGAATACAACCTCCACAAAAGATGGAGGACTCGCCTCACTTGTACATCTCTGAATTTGGAGACAATGAGGatatggaggaggaagaggaggaggaggaggaggaggaagagcgAGCAGCGGACGACGACAACTACATTTATAAAGAGGAAACTAACATGGAATCAGACATGATTAAGTCACTGTACCCAGATCTCCATAAACATCCAAACCAGGATACTGAGAGAGACTGGAACTCTTTTCCCTGCCAGCACTGTGAGAGACAATTTACCAGCAAACAAGGCTTAGAACGACACATGCACATCCACGCTTTGGCGAACAATGagacacacgcatacaaaaGCAATAAGAGCAACACATCTTTTGGTTCAAATCTGGGTCAGCTGCAGCATGAGAAGATGAAGCCTCTGGATTCAGTAAGCTCAGTCACGCAGCTTCATACTCTATCCCCCACTAGCTCTAACACTTCCATTTTGTCGGCTGGTGACCACACTGCTCAGCCAGACAAACTGGGAATATTAGAGGGGCATCATGCTTGCAAGTACTGTGAAAAGATATTCACTACACATACCAACAAGCGACGACATGAGCACAGGATCCACGAGCAGCACCAGCAAGTCACTGATTTGGAAAAAACCCAGCTGCCCCAAGAGGAAAATCTCCAGAGGACACTCTGTGAAAAATCTCAACAGGAAACCGAGCTTGGTGACAATACAGCACCTGCAGCTGTTGTGGAGAATATAGTGGAAGAAGCACAACAATACATGCTGGATGTCTCCAGCAATATTTCAGAGAATCTGAGCTTTTATATTGATGGAAAGATAGTGTCAACAAGTACAGTCAGTAGCTGTGAAGCAGCTGAGGTTCATTCTGGGTCTTCGGCTATAGTTGGACTGGATGCCCTGATTCTAGATCCCACTCAAATAAGCCAGGTTTTAAATACAGATTCAGTAACAGGCAAAGAGATACCTGGTCAACCACTGGCAAAGAGAAGAACTGCAACACCACCTCTTTTACCACAAATTAAAACTGAACTGGAATCTGAGGCGGTTGTATCGTCTTCCTCATCTTCACTCGTATCTTCTTTGATAGAGAATCTACATCCTCAGAATACAGAGTCTACAGTTGCGCAGAAGGAAAgaactgtgtttctgtctccaaaGCTGAAGCAGCTCCTGGAAAAGCAGGATGGCCTTAAACCTACACTTGCCCTCATCGCAGATGGCCAGAAGCCTTGTtcacctgtctctctcgctGCCCTGCCTGCTGGATCAGGAAGGTTTAAAAGAAGGACTGGATCTCCACCAAGCTCTCCCCAGCAAAACCCAACATCTAAAGAAGAAACACCAGACACTGGATATTGTGATGCTGCAAGTACAGGGCAGATGGAGACCCAACATAGTTCACCTTTGCACCAAACAGCCAATGTGGAGGATGACACAACTCCACCTGTGGAGGAGCCAACACTGACACCTATCTTGACAGAGAGCTGGCCCCCCGCGACCGGCGGTAACTCCTGTAACCAGCAGCCACTGGATCTCTCTAATACAGTCAAAAGCAATGGAGATGTAGCTTCAGCTGATGCTGTGCTGGATTTGAGTTTGCAAAAAAAGACCCTTGGTGATACTGAACCCACATTAAATTTAGTTTCACAGGCAATTTTGAAAGAAGGAAAATCATGCGTGGTGGAGACAGCCTTGATGAATATTGGAGAGCAAAATGTAAGCCTAGGGAATCTTGAGACCCCTTTAGTCACTGACTTCACCATATTTACAGGTCCAGATATGATGACCCAATTGGAGCCTGTGGCAGAAGGGCTTGTTTATGGACTTGCACTTCCCTCTGATTCTCTGACTCCATcacctgcctccctccctcccaccccTGTTGCTTTGCAGCCAGCTTCACCATGCACTATAGCATTTGCTTCCCCAGCCTCACACACAGCACTCCCTACTGCTCCTTCATTAATCACAGTTTTGGCACCACCACATATTTCTAATCCTTCAAGCCAACCAATCCAGGTATTAGCCCCAAATATATCTTCGGAGCCCCTGGTAATTTGCACCGaaaatgcattacatttttcagAGTGTGATTTAACTACTGCATTTGCCACCGCAAATTCTGCAAACCCTGTTACTCTCTCCCAGTCCTTTGATCCAAATCTAAATCTACCTGGCCATGTGTTTCTCTCTGATCCACTAGCTCTTAATCCGCCTATAGCTGAGTCCACTCCTATGTCAGAAGTGCCATTCACGCCCACTGTAACTTTAACTGATTCACTCATCAACTCTTACAACATTACCAGCAACACAGTGTTGATAGAGTGCACAATAGCTCTTGAAGCCCCAGGGAGTATAGTCCCTGCTGCAGTTACCTTACAAGAAAACACTGCTGAGCCTCCCGCACCTACACAGATGGTTGTTAATCACATAGAACAGCAACAGATTGTATCAATGCCCAATCCTCAAACTGTGGACCCCACTATTCTTATGTCCTCCATCTCAGAATCAGTAACTCTATCCACCACCGCCTCAGTGATATCTGATTGTCCTACTGTGGGTGAATCAAGTCCTGACCCAGAGCCTGTTGTTAATACAGAGTCACCAACCATAAAAGAGGAGGAACCTGCTGACAGTACTGTTTCCATACCCGAAATCTCATCTAAGACCTCACCTTCTTCTGAGAAAGCTGTAGAGGACGAATCCTTAAACAACATACCAAGTGATGCACAACAGCAGACTTTCACCAAGAATTTTATCTGCAATGTGTGCGATAATCTTTTTCATTCAATGAAAGAACTGAGCCATCACGTAGGTGACCATGCTGATGAATGGCCCTACAAATGTGAGTTCTGCGTGCTGCTCTTCAGCAAACCCTCCGCTTTGCTTGATCATCGATTAAGCCTCCACGGCGTCGGCAAGACTTACGTTTGCAGCGCATGTGCAAAAGAATTTGTATACCTTTGTAATCTGAAACAGCATCAGGAAGAATTGCATCCTGGCCAGCAGTGTACATACACAGAAGACGAAAAGGGAAAACTAAGACCTCAGAACTACAATAACTCAACAAAAGTCCACACGCAGCCCTTGGTGCCCGATGCCGCAGAGGAACCCAGGAAAGTGGTGAAAAAGGAAGAAGGTGAAGTAGATGTGGCGGCTGAAGAACTGTTtacaacaataaaaatgatGGCCTCAGACGGAGCCAAAGCCAAAGGCCCTGATGTTCGTCTTGGCATTAACCAACATTATCCCAGCTTTAAGCCCCCTCCATTTCCTTACCATAACAGATCACCTGCTGGCTCAGTGGCTTCAGCCACAAACTTCACCACCCACAACATCCCACAAACCTTTAGTACGGCTATTCGGTGCACCAAGTGTGGAAAGAGCTTTGATAACATGCCAGAGTTACACAAGCATATCCTGGCTTGTGCAAATGCCAGTGATAAAAGGCGATACACGCCCAAAAGGAATCCTATTCCACTGCGGCACTTTGCAAAAACTCAAAATGGAGTTCTGTCTACCACCAATTCTACTAACGGACTAAATGCTTCGAACAGGCCCAGCCAGTCAAACAGGTCCAAACCTAACCAAGAATCTCCGGTGAATGTGAAGTTCAAGGTGttgaacaaaaagaagaaaaagttgGTCCAAAGGGTCATGCCACAGAGGAACAAGCCAGTCCCTTCATCAAATAAAATGTCACCTGCACAGGTGGATGAGCATCAGGAGATCTTTGTCTGCCCACACTGTAGCAGGGAGTTCACAATGCGTCGCAGCAGAACCAAACACATGGCAGTCTGCCCCAAGAAACCGAAAGAGgtgaagaaaaggaaagaaggaggAATCTCCGTGACAAAGGAAAATAATAGACACCTGCATAGAGGGGTTGAAGAGAAACAACAGGCCTCGCCTCAGCATAAAACAAGACTCCAGACTTCTGGCCCTGCTAAAAGGTCCGCAATCCTACCAGTGCAAACGGTCTTTTCAAACAAAAGAagtaaaataattataaaagagAGCACGCAGCCAAAACAAGAGACACCCACTCTGAATGAACTTCCCATTGTTCGCACTTTCAACCCCTCTATGCGCCAGTACAGCAGAGTGCAGCATAACGTCAAAGGAATCCCCATTAAAATCACCATAGTGAAACCACAACGGGCTGCACCACAGAAGGATGAGCTGCCTCCCGCCCAGAACCGAGAGGAGGCAACCGGAGCCGTCCCCAACAGCTCTGAGCAGAGTCCTACAGCCTGAAGACTACTCAGCTACCCATTGGGGATCATCAGgatgcTGCTGTGTTGAGCTCCTCATACACACTTGTGTCACAGTGATACTACTATAAAGGGAGGTAACTGCTAATCACACTGTAAACCCCACTGACCCAAACTGCATCATACTGTACAATAATAACTGGATTGAGGATGGATAAAACAGACGACACTGCAGTGAGTGGATGTATTTAACTGTGTATTTGAATGCTTTTGTAGTACCTTGGAGTTTTGTAGATTTCTCCTTCACTTCATACACTTTCTGTCAATGGCGTGGATTTGCACTTTGAAGTTAATCTGACTGCTACATGTCACAAATTTGAAAGGAAGTGGGAGGGAGCTGGAAGGCTGCTCTCCTTTCCTACTTGGGTGGGTTATTTAGAGAGGATGGCAGGTGGCAATCAGTCTCAGCATGCATTTGCACTTTTCTTTAATTGTAGTCTGTGGCCTTTTGGTTTAAACTCTTACTGCATGCTGTGAGCTTGTACTATAGTAACAATAATTTAGGATGGATTATGTTGATTCAATTAGGCCTTAAACACTTAATCTGATGTTTAGTCTGACAATAACCAGTGTAATTACATAATGGAAGACGCATCAAGATCTAAACGCAAGACTACGGAATCATGGAAAAGTAACACTCTATAGTACAGTGTAACATTGTCCACAAGCTACCTATCAAAACGCTTAAGGATATCGACACTGTTGATGAAAGTCAGCGTTTTCAGTTTTGGAGGGAATGTACCATTAGTAGATATATTGAAAatcaaaattgtatttaatcTGGTTGGCCCAGTTGCTTTGTATTTGTATGAAAGTTTTGAGAATAATTCCTTGAATGTGCCATTAAATGTATGTAATATGACTAAATGTGGCACAAAGACGATAAAGAATAAACATAGTTTGCTGTTTCCCTCATATGGGATATATTTGGCACTGCAATTGCAAACAGAAGTACCATAATCTGTAAAAGTTGGATGCATCATTGACACCTTTACAATAATAAGAGTTCAACTCTAAACAGCATTGACAGAGCTAACTTCTGGAATCCTGAAACACTGAAATAGTTCCAGTAGTCCAGTAGGCTTTATTTTGTACCCATTTCATAAAATGCTTGTCAGAAATAtgattttgtgtttatttttcccCATTCAATGACTGTAACTCATATTAGATATTCCATCTGTTTAGGTCTTTGTCATCTGTAGCATACAGGTTTATAATCTGTCAACAGTTTATTGTGTGAAGTGTGTATAATAAATCCCAACTTGCATAAATCACAAAATGGAAATGTAAGATCAATTATGGGGTACATTTTCGCTGGAACCCTGTAGTGACATGAAATGATTGTGGCAAGTTGTCGCTAATCGCAAAGAGTGAGTGTAATGAATTGTATCTTTGATTTCATTTTGTATAAGCTTCTAGTTTGAAGAGCCAGTGCTATACAGTGTAGTTATTTAATTACGATTAAATTGAGTTATATTAATTTGGGTAAactaaaacagagagagagagagagagagagagagagaggactttATTGCCTTTTCAACCCTTGCTGGTAATATCTTCATTCAGATGGACTGCAATGTGTTGGATGTACAGGGTGGTTTAGAAGACTGTTATTTAACTGTGAAAAGTGCTTGTAGCATTTCGAAGTATAAATTGAGTCatgtatatttattaataattttaaATCATGTTATCAATATCTGAACAGGTCCTCTGTATGATTTGCACTAAAGTTTTTTCAAGCGAGTGTTCAAAATAAATGGAGAATGTTAAAAGATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639163.1 lncRNA upstream 159180 25009989 ~ 25015398 (+) True LOC120558677
TU70673 lncRNA upstream 214475 24959816 ~ 24960103 (+) True G52892
TU70634 lncRNA upstream 229427 24940795 ~ 24945151 (+) False LOC120559118
TU70635 lncRNA upstream 229427 24942240 ~ 24945151 (+) True LOC120559118
TU70586 lncRNA upstream 421398 24751895 ~ 24753180 (+) True G52827
TU70912 lncRNA downstream 625482 25809713 ~ 25811047 (+) True G53056
XR_005639231.1 lncRNA downstream 811002 25995233 ~ 25997094 (+) True LOC120559215
TU70971 lncRNA downstream 887354 26071585 ~ 26076664 (+) False G53096
TU70974 lncRNA downstream 887354 26071585 ~ 26076664 (+) True G53096
TU70988 lncRNA downstream 912128 26096359 ~ 26099635 (+) True G53109
XM_039799812.1 mRNA upstream 9384 25155352 ~ 25165194 (+) True si:ch211-156j16.1
XM_039799813.1 mRNA upstream 9384 25155359 ~ 25165194 (+) False si:ch211-156j16.1
XM_039799809.1 mRNA upstream 20077 25088905 ~ 25154501 (+) True LOC120558685
XM_039799810.1 mRNA upstream 20077 25088905 ~ 25154501 (+) False LOC120558685
XM_039799811.1 mRNA upstream 20077 25107882 ~ 25154501 (+) False LOC120558685
XM_039800292.1 mRNA downstream 4475 25188706 ~ 25405950 (+) True LOC120558931
XM_039800293.1 mRNA downstream 4478 25188709 ~ 25405950 (+) False LOC120558931
XM_039800294.1 mRNA downstream 225497 25409728 ~ 25414753 (+) True LOC120558932
XM_039800069.1 mRNA downstream 238651 25422882 ~ 25425937 (+) True tmem51a
XM_039800071.1 mRNA downstream 256130 25440361 ~ 25443840 (+) True LOC120558819
TU70648 other upstream 217248 24953442 ~ 24957330 (+) True G52871
TU70197 other upstream 1409425 23759234 ~ 23765153 (+) False tmem201
TU69870 other upstream 2327640 22842066 ~ 22846938 (+) False lamtor5
XR_005639388.1 other upstream 2612057 22562154 ~ 22562521 (+) True LOC120559933
TU69718 other upstream 2614250 22556329 ~ 22560328 (+) True G52210
TU70864 other downstream 559379 25743610 ~ 25748317 (+) True tprg1l
TU70970 other downstream 887354 26071585 ~ 26076664 (+) False G53096
TU71155 other downstream 1168229 26352460 ~ 26353463 (+) True G53232
XR_005639211.1 other downstream 1195445 26379676 ~ 26382295 (+) True LOC120559113
XR_005639212.1 other downstream 1195445 26379676 ~ 26382295 (+) False LOC120559113

Expression Profile