RNA id: XM_039800822.1


Basic Information

Item Value
RNA id XM_039800822.1
length 2172
RNA type mRNA
GC content 0.46
exon number 13
gene id LOC120559240
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 23193386 ~ 23200479 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACATATGACGCTGTGGTTCACTTCACTTCCTGTAAAAAATATGCTCAACAGAAACAGCTACATGTGAAAGACAGACAAAAACCCCGTACACTATTGAGAAGAGTGAGAAAATGGATGACTTCACCTCATGAAGACTTTTTCCTACTGAACGAGATGGCGTTGTAGGCTCGAGGCACGGTAACAGCCAGAGGAGCTGCCATGGACACCCTGGCAATCACTGGAATACAGCTCTCCCCAGTGAAACACTTTGACCAATTAGTGGACATCAGAGCAGAAAAACGTGAACACCTGCGAGGACGTAACAACGTGACATCATGTCGCAGCCCTACGAGAGAGTTTGACACAAGACTGATAAAAAATGAACTGAAGGAAAAGAGGCATCTTGAGTTTCTGAGGAGGAGATCAGTGAGCCCAGAGCCGTGTGGTTGTAATACTACAAACTATTCTTCCAGGAGAAAACCTTCaccaaagacattttcagtgaaACATCACAGTTCAATCAGCAAGTCAGAGGCATTGCatacaaatattcaaaatacTCCCACCGCTAACGGGAGGCATCCAATGATGATTTTAACACCAAATAGCAGCATAAGTGACGGTCCAAGCACCAGCAACTGGGCTTCATTATGGTCAGAACAGGCAACACTGATGAGACAAGAGAAAGGCCATGCAAGAAAGCAAGCATCTACCTCCACACAAGCGATGAAGGAATCAAACCAGCACAGGATGAAAAGCTCAGATAAAAGAGAGAATAGTATGAATGCTCAAAAGACAAGCATCAAAACATTCATCCAAACAGAAAAGATTCACCAGAAACTCTCCATTCAAACTGAAAATATTCTACAAAAAAAGATACTGCAAGAGACCAGTGTGCAGACAGAGTCTGGTCTTGTCACTGTCAAGGAGTCAGATCTTCAGAAGTTAACTGACTACTTGCAGGAGGCCCTGTGGAGAGAGGAGGCCGTGAAGAAGAAGCTGGCAGCCCTCCAGGAGAGCACGTCAAACCTCATGAACTCCTCCAACAAAATATGGATGGCTCGTTGCAGTGAAGACCTGCTGAGAAACAAGATCAAGGCTCTGGAGGCGCAGCTGCAAGTCTGCCTGCAGAAGTTTCCCAAGGATGGAGTGAAGAAGCTGATGATACAGATGGAGAAGCAGAAACTGGTGTATGAGGAGAGGGTCCTGGTCGCCCTGCAGAAGgtcacacaggagaaaactgAAGCGCTCAGCAAAGCTGCGACAATGCAGGAAGCGGTAATTACAGCAAAGGCAGAGGCACAGAGGTGGCAGAGCCTTTGTGAGCAGCTGAAGCTGAGCTCTGGACAGCTTAGGGAGAACCAACACCTCAGTAATGACCAGCTGCAACAGCTGCACAGCCACGTGGAGCTGTCCAGAGGCAGAGAGGCCGAGCTGAGGGAGGAGGTGGTTTCATTGAGGCAAGAGAAGAAGGAGCTACAGTACAACATTTGTGTTCTGGAAGAGGACAACCAGAGTTTAAGAGAGGAAATCCAGAATCTCAGAGATTGCAGCAATGAGAGCCAGGACTTAATGATGCAGGGGCGTCTGACATCAGAGGAAGCAGAGCCGCAACTGACGGCAAGAAGGGACTCTCAGGTGGAGGAGCAGCTCCGTCACACTCAGGAGAAACTCCGactcaaagagagagagGTCTCCGGAATTAGATAatgccacccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatcttgggTTCATGATTTAGGTAAGCATATGTGTTTACAGCACCAGTAATATCTTTGTTTGCATCGAAGGTTAGAGGAAgcttgtatttgtatttgtacattttgtatacaGCTAAAATGAAcacctccagcatgagttaAATACACATTGAAAGGGCAGAAATTCTCAGAGTTGGGATGGCACTCCATAACGCTACCCTGTGGTTAAATTGTACTGCTTAATCCTACTTCTCTTCAATCGAGATACATTAAATGCTTCTACATAAATCATTAAAGTCTCCTGAAACTTCTTCAAGTCAAGAATTTTAGCtcttgggcgcctgggtagctcacctggtagagcaggtgcccatatatagaggtttactcctcgactgctgtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69954 lncRNA upstream 399 23187400 ~ 23192988 (+) True G52403
TU69951 lncRNA upstream 5679 23140910 ~ 23187708 (+) False G52403
TU69903 lncRNA upstream 170059 23020806 ~ 23023328 (+) True G52364
TU69904 lncRNA upstream 170059 23020806 ~ 23023328 (+) False G52364
TU69923 lncRNA upstream 173379 23009177 ~ 23020008 (+) True G52379
TU70027 lncRNA downstream 22961 23221926 ~ 23246504 (+) True G52461
TU70058 lncRNA downstream 66266 23265231 ~ 23275195 (+) True LOC120558323
TU70061 lncRNA downstream 66266 23265231 ~ 23275195 (+) False LOC120558323
XR_005639092.1 lncRNA downstream 66364 23265329 ~ 23275141 (+) False LOC120558323
XR_005639093.1 lncRNA downstream 66364 23265329 ~ 23275141 (+) False LOC120558323
XM_039801813.1 mRNA upstream 17258 23170234 ~ 23176129 (+) True LOC120559793
XM_039799735.1 mRNA upstream 25897 23145686 ~ 23167490 (+) True ampd2b
XM_039799733.1 mRNA upstream 66475 23109930 ~ 23126912 (+) True gnai3
XM_039799222.1 mRNA upstream 89292 23099553 ~ 23104095 (+) True gpr61
XM_039800303.1 mRNA upstream 124908 23062237 ~ 23068479 (+) False atxn7l2b
XM_039800827.1 mRNA downstream 2654 23201619 ~ 23204113 (+) False dnase1l1l
XM_039800824.1 mRNA downstream 2660 23201625 ~ 23204113 (+) True dnase1l1l
XM_039800825.1 mRNA downstream 2671 23201636 ~ 23204113 (+) False dnase1l1l
XM_039800829.1 mRNA downstream 6422 23205387 ~ 23207331 (+) True si:dkey-183p4.10
XM_039800831.1 mRNA downstream 6422 23205387 ~ 23207331 (+) False si:dkey-183p4.10
TU69870 other upstream 346449 22842066 ~ 22846938 (+) False lamtor5
XR_005639388.1 other upstream 630866 22562154 ~ 22562521 (+) True LOC120559933
TU69718 other upstream 633059 22556329 ~ 22560328 (+) True G52210
TU69473 other upstream 1098497 22093905 ~ 22094890 (+) False LOC120558641
TU69454 other upstream 1132742 22056721 ~ 22060645 (+) False avpr2aa
TU70197 other downstream 560269 23759234 ~ 23765153 (+) False tmem201
TU70648 other downstream 1754477 24953442 ~ 24957330 (+) True G52871
TU70864 other downstream 2544645 25743610 ~ 25748317 (+) True tprg1l
TU70970 other downstream 2872620 26071585 ~ 26076664 (+) False G53096
TU71155 other downstream 3153495 26352460 ~ 26353463 (+) True G53232

Expression Profile