RNA id: XM_039800829.1


Basic Information

Item Value
RNA id XM_039800829.1
length 1671
RNA type mRNA
GC content 0.46
exon number 4
gene id si:dkey-183p4.10
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 23205387 ~ 23207331 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGAAGCTTGAAAGTCCTTGCAGAGATGGCCCGGGGAAAGCCAGTTTGGAGTTTCCAGAAATATCAGTGCAAAATCTGCAGGATCTTATTGCTGAAGTTGATAGTGAGGATTATGGAGAGAGAATGAAGGATTTCTCAGGGGATGAGCACCAAGACGCAGGTGAGAGCTTTGCAGATTATCCCTCAGACTTGTCTTCTTGTGAATATGTAGAAGATGGAGCAAAAAATCAAGAGAGCAATCACCAGTCGAACGCCTTGGCTTGTGCATTCGAAAGCGGTTCAATTGCAAAGCAGAACACCTGCCTGGAAAGAGCTGTGACACATGCAACAGGGATGGGAAAAGCTGAGGACACTGATGAGGAGGGAGACGGGTATCTGTATAGCAGAGATTTAGAGGGGGATGCTGATGAGTTCAGGAGCTTGGATGTGGCAGCTGGAGAAAAAGAGATTGTGGAGAACGTATTGGGCGATGCAGCTGTAACAGGGGTTGATGATGGAGGGGAGACAGGTGAGAGTGATTCCTACATCTCCAGTGATGATGAGGACCAAGAAAAGAGGAGCAATGAGGAAATCATTGATAGTATACAAGATCTTGAAAGCAACAAGCAACGGGTGGAAACTCGTGGCGGGAGCAGTGCAGCGTTTCCTGACGATGATGACGACAACAGAGTGAATCCAGCCGATTTCAACATAAATTGGAATCTAGACGTGTTGACAACTGATACCCTTCGGTCTGAAGACCTGTTAACCACAGAGGACACAGACAAAGCGGAAACACCGCCTTTAGTGACTCAGCGTCCTCCAGAAGACGTCAACAGCTactcaacaacaacaagccCCTCTAACCAGGGATCCCTGGATGATAGTTTCTTCTTCAACAATGAACCCGAAGCCTCTAGGCTCTACGAGCTGGGACAGTTGGGAGACGACGAGTATGAAGAGGAGAGAAACTGGGAACAAGAGCAAGAGAGAATCAAGGCTTTCTATGAGTTTTATGATGACAGCGACGGAGAGAATGAAAGAGAAGGGAGGCAGATAAAAGTTCAGTTTTGTGCAGATCCATTGTCTCAAGTCATTCACTACGAAACTGACAGCAGTGACAGAGACTCAGTCAGCAGCTCaacagaaggggaggaggaccCGAGCTCTGCAGAAACATCTGAGAAATGGAGGGAGCCTGACAACACCACGCAATTGACACCGGCTTGTGATCCCCCGAACACTCAGCTACCAGAGAACGTGCCAGATAtcagcaacacacacatttgtaccAAGgaacacaaagtgctttactcACTAGCATTTACTGAACATTCACTTTGTTCATTTGTTACTGAATTGTTTGGTTACTTTTATCTCTCCGTCCTGTCCTTTGTTCCCACAGTGTTTCAACATGCTGAAGCTGACACTGAAGATGGGTCTGGTGATACTGATGGGACTGCTGATGTTCTGGTTTGCCACAGACCAAGCGGGCTGGCTCAGCCATGTGTCGTTCTTTTAGGTCAAAACCTAATTTTGGTCCTTAAAACTTGTTCACATGCTTACgggtgaaaaaagaaaaatccaaaaTGACATTATTGTCTTGTAAAAATGCGATGTAAAGTGCTAAACATTCATACTTGTGTTCTGTTGTCTGTAACATTGTGCTTAATAAAGAGGGTAAAaatctgg

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04660 T cell receptor signaling pathway
ko04062 Chemokine signaling pathway
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69954 lncRNA upstream 12399 23187400 ~ 23192988 (+) True G52403
TU69951 lncRNA upstream 17679 23140910 ~ 23187708 (+) False G52403
TU69903 lncRNA upstream 182059 23020806 ~ 23023328 (+) True G52364
TU69904 lncRNA upstream 182059 23020806 ~ 23023328 (+) False G52364
TU69923 lncRNA upstream 185379 23009177 ~ 23020008 (+) True G52379
TU70027 lncRNA downstream 14595 23221926 ~ 23246504 (+) True G52461
TU70058 lncRNA downstream 57900 23265231 ~ 23275195 (+) True LOC120558323
TU70061 lncRNA downstream 57900 23265231 ~ 23275195 (+) False LOC120558323
XR_005639092.1 lncRNA downstream 57998 23265329 ~ 23275141 (+) False LOC120558323
XR_005639093.1 lncRNA downstream 57998 23265329 ~ 23275141 (+) False LOC120558323
XM_039800827.1 mRNA upstream 1274 23201619 ~ 23204113 (+) False dnase1l1l
XM_039800824.1 mRNA upstream 1274 23201625 ~ 23204113 (+) True dnase1l1l
XM_039800825.1 mRNA upstream 1274 23201636 ~ 23204113 (+) False dnase1l1l
XM_039800823.1 mRNA upstream 4908 23193386 ~ 23200479 (+) True LOC120559240
XM_039800821.1 mRNA upstream 4908 23193388 ~ 23200479 (+) False LOC120559240
XM_039800720.1 mRNA downstream 592 23207923 ~ 23213985 (+) True LOC120559183
XM_039801909.1 mRNA downstream 70055 23277386 ~ 23281776 (+) True gpr157
XM_039799401.1 mRNA downstream 77588 23284919 ~ 23292578 (+) True LOC120558415
XM_039799402.1 mRNA downstream 77958 23285289 ~ 23292578 (+) False LOC120558415
XM_039799405.1 mRNA downstream 77958 23285289 ~ 23292578 (+) False LOC120558415
TU69870 other upstream 358449 22842066 ~ 22846938 (+) False lamtor5
XR_005639388.1 other upstream 642866 22562154 ~ 22562521 (+) True LOC120559933
TU69718 other upstream 645059 22556329 ~ 22560328 (+) True G52210
TU69473 other upstream 1110497 22093905 ~ 22094890 (+) False LOC120558641
TU69454 other upstream 1144742 22056721 ~ 22060645 (+) False avpr2aa
TU70197 other downstream 551903 23759234 ~ 23765153 (+) False tmem201
TU70648 other downstream 1746111 24953442 ~ 24957330 (+) True G52871
TU70864 other downstream 2536279 25743610 ~ 25748317 (+) True tprg1l
TU70970 other downstream 2864254 26071585 ~ 26076664 (+) False G53096
TU71155 other downstream 3145129 26352460 ~ 26353463 (+) True G53232

Expression Profile