RNA id: XM_039801000.1


Basic Information

Item Value
RNA id XM_039801000.1
length 2001
RNA type mRNA
GC content 0.44
exon number 12
gene id c5h1orf127
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 24013889 ~ 24020924 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaaacattggtgaCAGTTGAAGTTTCGCTCATTGTAATCATCAATATTTCAAATGACGAAATGGAACAAGTGACATCAGCCCACTTACCTACAAATAGGCGAGGGTGAGACTGCCCATTCAAGTTTTCATCAGTGGAAGTGACATGGATCACATAAGATTTGGCATCCTACTTAGAACTATTGTTTTACAATGCTTTATCATGAGGACTGTGCTTTCCATTCAGAAAAGAGAATGGATTGATACCCCAACAGCAAGATTAACAGAAGGAGATGTGGCATGTTTTTCTGAATACATGGAGATGTGGATACACAGTGCAAGGATTGAAGGGTTGGGACTCTGGCTGTCTGGGGCCTTACAGACCCAAGTCAACCTTGCTTCTCTGGATCACCTAAATCTCCAGCTGTCTGACTGTGGATTCGCATTGCACAAAGAGGCTGACAAGAACTTTATTTTTAGAGTCAGTTACACTGGATGTTTTGTCCAGCAACAGCATGGCTACCATATCCTGACACTGCATCTGGTGAAGAGGATAAATCGATTCAGAGGCAGACCTCATAGTTTCATAATGAAGTGTCCCCTGTTTTCTGTACTGCCCAGCAGAGAGCAAATCCAATGTGACCCGGAGTATATTCAGgtgACCAGACAAGTTCCCTATGACATCTGGGACAATGAGCTGCAGTGGTCACTTTCTCTGAGCGATCACCTCATTGTAGCTCTGGAGGATGCCAGCCTGATTCAGATGAATATTGACATTAATGGACCAGACATTACAGTTCAAGGCAGGAGAAGGGAGGTCTTGAGCCCTGTCAAAGTAATGGAAAATGAAGCGGAATTCTTGGCCTTGAAGCTGGTCAGTGGTCAGTATGCCTACAGTATGGAAGCTACGTGTCCAAAAGTGACCACGTCCACACCAGAGGAGACTGTGCTGCACATTTTTAAACGGCGTATGGGTTTGACCAAGCGGGGCAGCGCTGACTACGAAGCACTGACAGTCAGTAATGTGTCGGTGAACCAGACAGATAATTTCACTGTGCATGAGACGAGTGAATTTGTGACACTGACCATGCCTACAACCCAAATACTCCAGACCAAGACCTGCACAGACAGCAAACAACTCCTGCAGCCGTTCTGTAGGGTGGATGTTGTGCTCACCTTCAGAGAGACAAATCACAAAATGCACTGGACCATGGAGAACACACTGCCATGCACAGAGCCAGATTTCCTTGAGTCATCAGCCACAGCTGAACCATCAGAAACATCTGTCCTCACAATGGTTCCACCTGAAGAAGAATACCAACAATTCAACACAACCAGTGGGAATAAAGAGCAGCAAAAGCAGAGAAGACTGAAGTGGATCTGGGAGGACTAGAAACCTAACAGAAACAGCATGATCCAGTGCACCGATTCTGGTAGCAGGTGTCAGACTTAGCAAACTTCAACATAATTCATATAGTGAATGATGTCAAATTCAAAAACCATGTTTAGCATCCCAAAAAATGtatatgacattttaaaatgaaatgtccTTCTTTCTAAGTCATGCTAGACTTCAAAGACAGTTCCAATTAGTGACAACACTTGATTCACTTCTTTTGTTTTAATTCTCATTGGTGCCACGTACTCCACGTCTGTTTGCAGTCTTGAAAGGTGATGCTGTGGTCAGTCAGCGCTGTGAAGGTTGATTATACAAGCAGAAATACAGGCAGACCTCTGCCAGTCGTTGCCTGAGGGAGGACATTATCCAGACGCAGACAAGGCAGGCGTTAAATAAACATGTCTCTATCCGAGCAGCACAACAGGCTGACGTAGAGAAGACCCTGCAGCTGGTACAGCTGATGCTGCCTTCCAGAGAAGCTTTGTGTTAGAGAAGCTCAtaaaaaatacttgttttttaatGCCACAGACTGTCAATGAATCTCTTTCAGAAGTTTTATGTTTCTTAGGGTGAaatagacactttacaaatgtgcttttttcttctgttaaaaataaatcaatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70296 lncRNA upstream 588 24012963 ~ 24013301 (+) True G52629
TU70294 lncRNA upstream 2788 24009796 ~ 24011101 (+) True G52628
TU70245 lncRNA upstream 175927 23837692 ~ 23837962 (+) True G52611
TU70231 lncRNA upstream 199483 23814132 ~ 23814406 (+) False ctnnbip1
TU70233 lncRNA upstream 213021 23791479 ~ 23800868 (+) False ctnnbip1
TU70381 lncRNA downstream 40139 24061063 ~ 24073977 (+) False LOC120558580
XR_005639153.1 lncRNA downstream 40168 24061092 ~ 24074008 (+) True LOC120558580
TU70416 lncRNA downstream 249197 24270121 ~ 24274036 (+) True G52728
TU70439 lncRNA downstream 339882 24360806 ~ 24362267 (+) True G52742
TU70454 lncRNA downstream 366229 24387153 ~ 24390127 (+) True G52756
XM_039801310.1 mRNA upstream 12453 23994946 ~ 24001436 (+) True pgd
XM_039801305.1 mRNA upstream 20197 23960109 ~ 23993692 (+) False kif1b
XM_039801303.1 mRNA upstream 23528 23928485 ~ 23990361 (+) False kif1b
XM_039799625.1 mRNA downstream 183451 24204375 ~ 24253787 (+) True casz1
XM_039801878.1 mRNA downstream 304337 24325261 ~ 24334067 (+) True dffa
XM_039800437.1 mRNA downstream 421964 24442888 ~ 24497151 (+) True LOC120559012
XM_039800278.1 mRNA downstream 538483 24559407 ~ 24630995 (+) True cntn3a.1
XM_039801005.1 mRNA downstream 689859 24710783 ~ 24715633 (+) True ttll9
TU70197 other upstream 248736 23759234 ~ 23765153 (+) False tmem201
TU69870 other upstream 1166951 22842066 ~ 22846938 (+) False lamtor5
XR_005639388.1 other upstream 1451368 22562154 ~ 22562521 (+) True LOC120559933
TU69718 other upstream 1453561 22556329 ~ 22560328 (+) True G52210
TU69473 other upstream 1918999 22093905 ~ 22094890 (+) False LOC120558641
TU70648 other downstream 932518 24953442 ~ 24957330 (+) True G52871
TU70864 other downstream 1722686 25743610 ~ 25748317 (+) True tprg1l
TU70970 other downstream 2050661 26071585 ~ 26076664 (+) False G53096
TU71155 other downstream 2331536 26352460 ~ 26353463 (+) True G53232
XR_005639211.1 other downstream 2358752 26379676 ~ 26382295 (+) True LOC120559113

Expression Profile