RNA id: XM_039801012.1


Basic Information

Item Value
RNA id XM_039801012.1
length 1686
RNA type mRNA
GC content 0.56
exon number 2
gene id LOC120559355
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 32381884 ~ 32392543 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGTGGATCACTTGCCGCTTGGTGAGGAGACCTTCCTGTGTTATACCGGCTCCCCGGGGTCTGACTACAACTGCCCCGGTCGCCACGCCAGTGGTGGTGCATTGCCGGGCATCATGGTAACTGACGCATGCATTTacgaccaccaccaccacccctacCAAGGGGTGAcgctctcctcctcccctctcctctcggAGGATGACCTCAGCGACTCCTCCAGCCCTCGTTCCTCCCTCTGCTCCAGCCCCGAGTCCTCGTCGCCCACGTTGTGCCACGTCCTCGGCTCCAGCTACGAaagcaggagcagcaggagcagtGGGAGCTGTAGCTCCTCAGGCGGAGAGAGTCAAGACAGCCTGCTGGACCTCCTCCTCTCGCATACTTCCCTCACCACCTCAATAAGCTCTAATGCCAGCAGCAGCTCTCACTCTTCCTCTCTATCCCTATCCTCCCCACCCTCATCTGACCCTGTTTTGTCCATGGGCCTGGCCTGGGAGTCCAAGAGGGAGCAGCGGTTTACTCTCCTCCATCAGCAGGCCAAAGAGGACTGTTACGAGTTCCCTGTCTTCCTGGACGAGCTGCAGGATCCTGCGGCGCTCCTCTTTCAGCCCACCTTGGAGGAGATCGAGGAGTTCCTTGAGGAGAACATGGCGGTGGCAatggagaaagaagaggaggggaGCGATGAGGCGATGTCACCAATGCCCGAGGATGCAGAGGCGGAACGTACGACGAGATTAGCAGAAGAACTGGTATCACAGAACTCAGATCAGACTGTGCCCGTGGCTCATTCTCCACTCTCCTCCTACACAGAGACCAAACATACACCATGTGCATTTGACATGGACAGCTCACCATCATCAGTGGATGTTACTAGTTCTAATTCTACTAGTAGTGTTGATGCGATCAAACAGGAGGATTGTGGTTCACCAGCAGCCTCATCAGAAGGTACCAGTACCTCCAGTGTGCCTGTAATCCTACAAATCCAGCCCATACAGATCAAACAAGAGCCCAACCTTAGTGCCATATCAGATGCTGTGCAAACCCAACTGCCCAAAACCCAATCCCAGCCAAACCAGGCCCCGTCGGACATCAAAATCGCCCAACTCCTGGTCAACATCCAGGGGCAGACCTTTGCCTTGGTGCCTCAGCTGCTTTCCCCAACAAACCTTACTGGCTCAAGCAAAAATGGAAGCATCGTTTCGCCCAAATTTGTGCGGATCGCACCAGTGCCCATTGCTGCAAAACCCATTGGGCTTGGGGAAGGCGGATTAGGCGGAGGCTCAACTGCAGGGGTTCTCGTTGGAGGTCAGAGGTACCAGAAGAGTGCAGTTGCAGACCTTATTAAAATGCACAAGTGCTCTTTTCCTGGCTGTAATAAGATGTACACCAAGAGCAGCCACCTAAAAGCCCATCTGAGGAGGCACACGGGGGAGAAGCCCTTCGCCTGCACGTGGCCCGGCTGTGGATGGAGATTCTCCCGGTCCGACGAGCTGTCCCGACACCGCCGCTCCCACTCGGGAGTGAAACCATACCAGTGCATCGTCTGTGAAAAGAAGTTTGCCCGCAGCGATCACCTGTCCAAACACCTCAAAGTCCACCGCTTTCCACGAAGTAGCAGGACAGGACGCTCTGCAAACTGACTCTTCTGACCCCACTCTGACAGACTGACGCTTAAGCCGGAG

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72980 lncRNA downstream 382812 31998533 ~ 31999072 (-) True G54631
TU72978 lncRNA downstream 389333 31992349 ~ 31992551 (-) True G54629
TU72966 lncRNA downstream 437619 31941687 ~ 31944265 (-) True G54618
TU72956 lncRNA downstream 758554 31623121 ~ 31623330 (-) True G54609
TU72947 lncRNA downstream 880995 31498777 ~ 31500889 (-) True G54600
TU73048 lncRNA upstream 19048 32409506 ~ 32409852 (-) True G54684
TU73095 lncRNA upstream 200525 32590983 ~ 32592616 (-) False LOC120559593
TU73097 lncRNA upstream 206114 32596572 ~ 32597493 (-) True G54724
TU73104 lncRNA upstream 284807 32675265 ~ 32675465 (-) True G54731
TU73106 lncRNA upstream 291704 32682162 ~ 32682516 (-) True G54733
XM_039800341.1 mRNA downstream 58609 32292942 ~ 32323275 (-) False LOC120558955
XM_039800343.1 mRNA downstream 60025 32292942 ~ 32321859 (-) False LOC120558955
XM_039800342.1 mRNA downstream 60061 32292942 ~ 32321823 (-) False LOC120558955
XM_039800340.1 mRNA downstream 60061 32292942 ~ 32321823 (-) False LOC120558955
XM_039800344.1 mRNA downstream 68400 32292942 ~ 32313484 (-) True LOC120558955
XM_039801739.1 mRNA upstream 22606 32413064 ~ 32511065 (-) True cpne9
XM_039799272.1 mRNA upstream 179850 32570308 ~ 32586963 (-) True si:ch211-220i18.4
XM_039799271.1 mRNA upstream 179850 32570308 ~ 32586661 (-) False si:ch211-220i18.4
XM_039799273.1 mRNA upstream 179850 32570308 ~ 32586572 (-) False si:ch211-220i18.4
XM_039799274.1 mRNA upstream 179850 32570308 ~ 32586571 (-) False si:ch211-220i18.4
TU73036 other downstream 59932 32316960 ~ 32321952 (-) False LOC120558955
TU73035 other downstream 69106 32306922 ~ 32312778 (-) False LOC120558955
unassigned_transcript_235 other downstream 1154753 31227060 ~ 31227131 (-) True trnaq-uug_1
XR_005639345.1 other downstream 2315943 30008242 ~ 30065941 (-) False tafa5l
TU73146 other upstream 376899 32767357 ~ 32773486 (-) True G54756
TU73247 other upstream 489735 32880193 ~ 32887290 (-) True G54834
TU73607 other upstream 1633560 34024018 ~ 34127495 (-) False G55124
TU73620 other upstream 1697512 34087970 ~ 34093118 (-) True G55131
TU73610 other upstream 1727446 34117904 ~ 34127495 (-) False G55124

Expression Profile