RNA id: XM_039801025.1


Basic Information

Item Value
RNA id XM_039801025.1
length 1902
RNA type mRNA
GC content 0.50
exon number 2
gene id LOC120559361
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 36557530 ~ 36559959 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATTTCTCCGCTGGCTTCCTCAAAGTGGTAAAAGATGGGCAACTCAGAGGAGGAAATGTTCTACCAATTAGATTACGACTACAACGACACTGATTTAGACTACCTGATTGAAGCACCTTGTTCATACCAGAACACGCACAGCGTTGAGCTGGTGGTCATACCGTATGTCCACATCATCATCTGCATCCTGGGCTTCGTAGGGAACAGCCTGGTGATCGTCACTTATGCCTTCTACAAGAGTACCAAGTCCATGACGGACGTCTACCTGCTGAACGTGGCCATCGCAGACCTGCTGTTCGTGGTGTCGCTGCCTCTTATCGTCTACAACGAGCTGTCGGCGTGGCCGATGGGGCCGGTGGCCTGCAAGCTCCTGCGCGGCTCCTACAGCGTGAACCTGTACAGCGGCATGCTGCTGCTCGCCTGCATCAGCGCCGACCGGTACATCGCCATCGTCCAGGCCCGCCGCAGCTTCAGACTGCGCTCGCTGGTGTACAGCCGCCTCATCTGCGCTGTCGTCTGGGCCTCCGCCTTACTGCTGTCCGTCCCAACCTTCTACTTCTACAGCTGGTACCAGCCGTCCTACAGCATGGACGCCTTcatagaagaggaggagagaaatcAGACCTCCGGGCCTACACAGTACATCTGCGAGTTCAGGTTCACAGACGAAACCACAGCGTTGAATACCAAGATGGCGGTCCCCAGCACCCAGCTGGCCGTGGGCTTCTTCCTGCCGCTGCTTGTCATGGTCTGCTGCTACACCGCAGTCATCGTCACCCTGCGTAAAGCCAGAAACTTCCAGCGGCACAAGGCGATGCGAGTGGTGCTGGCCGTGGTGGCGGTTTTCATCGTCTGCCACCTGCCCTACAACGTCACGCTGCTCTACGACACCGCCAACATGTTCGAGCTGCAGTCGTGCCAAGAGTCGGACATCCTGCAGGCGGCCAAGACAGTGACGAAGACCATCGCCTACCTGCACTGCTGCCTGAACCCGGTGTTGTACGCCTTCGTCGGGGTGAAGTTCAGGAACCACTTCAGGAGGATCTTCCAGGACCTGTGGTGTCTGGGGAAGAGCTACAGCGCCCCGCCGCTCGGTGAACCGATCCAGCAAAAAAACTGCTCGTCTTTCACCATGTGAGGACACCTGGCAGGTTCATGTGTTGACTAGAAACTTCCCTCCTTGGACCAAATATCCAGAAACTTTCCTCGTAGACCCAAAGGTCCAGAAACTTCCCTCCTAGATCCAAAAATCCTGAAAGTTCCCTCTTAGACCCAAAGATCCAGAAAGTTCCCTCCTAGACCCAAAGATCCAGAAACTTTCCTCCTAGACCCAAAGATCCAGAAACTTTCCTCCTAGACCCAAAGATCCTGAAagtttcctccttcctcctagACCCAAAGATTCAGAAAATTCCCTCCTAGACCAAACAATCCTGAAAGTTCTCTCCTGGATCCTGAAAGTTTCCTCTTAGACCCAACAATCTCTGCAGATCTCTGGAGGTCCAAACCtgctctatctctctttcagttaaggggtcctggggttaaaaaacattgaagacccctgatttaGAGACTTTATTTTGGTTTCTGGTCAAAATTCTTCAGCCCCGAACATGAAGCTGTTTTATCTGCTGCGACTCTTCAGAAGCTTTTCTGTTTAAACCGAATCAGAAGATTTTCAGTATTAAAAACTGGTCGGCTTTAGATTTGCCAAATGTCAAATCAAATGTCAGATGAACTCTCTGTAACCTCCAGTAATGACTGTTAAGATTTTATTCTTCTGATGTTTCTTTTTGACCTTGCTTTAGACTTAGTTTCCTGTCATATTTAAGTTATATCCGtttattttttgtaacattGAAAGCACAGTAGAGAAACTGATGAATGTAATATTGTTTA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0034453 microtubule anchoring biological_process
GO:0006935 chemotaxis biological_process
GO:0006955 immune response biological_process
GO:0070098 chemokine-mediated signaling pathway biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0016493 C-C chemokine receptor activity molecular_function

KEGG:

id description
K04181 CCR6, CD196; C-C chemokine receptor type 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74371 lncRNA downstream 5643 36544954 ~ 36551887 (-) True G55670
TU74365 lncRNA downstream 14895 36540534 ~ 36542635 (-) True G55666
TU74354 lncRNA downstream 45872 36511359 ~ 36511658 (-) True G55658
TU74264 lncRNA downstream 472664 36084517 ~ 36084866 (-) True G55602
TU74261 lncRNA downstream 474197 36083086 ~ 36083333 (-) True G55599
TU74363 lncRNA upstream 33306 36593238 ~ 36595825 (-) True G55664
TU74361 lncRNA upstream 34293 36594225 ~ 36598272 (-) True G55662
TU75208 lncRNA upstream 54645 36614577 ~ 36615851 (-) True G56162
TU75214 lncRNA upstream 97957 36657889 ~ 36699601 (-) True G56167
TU75191 lncRNA upstream 123708 36683640 ~ 36685282 (-) False G56155
XM_039800544.1 mRNA downstream 109738 36272871 ~ 36447792 (-) False plch2a
XM_039800543.1 mRNA downstream 167349 36272871 ~ 36390181 (-) False plch2a
XM_039800539.1 mRNA downstream 199556 36272871 ~ 36357974 (-) True plch2a
XM_039800552.1 mRNA downstream 200019 36272871 ~ 36357511 (-) False plch2a
XM_039800540.1 mRNA downstream 200019 36272871 ~ 36357511 (-) False plch2a
XM_039799312.1 mRNA upstream 21591 36581523 ~ 36588712 (-) True igf3
XM_039799297.1 mRNA upstream 39641 36599573 ~ 36606542 (-) False si:dkeyp-110g5.4
XM_039799298.1 mRNA upstream 39641 36599573 ~ 36606255 (-) True si:dkeyp-110g5.4
XM_039799296.1 mRNA upstream 39642 36599574 ~ 36606768 (-) False si:dkeyp-110g5.4
XM_039801622.1 mRNA upstream 50205 36610137 ~ 36625969 (-) True lrif1
XR_005639221.1 other downstream 658794 35887101 ~ 35898736 (-) False si:ch73-70k4.1
TU74116 other downstream 1147764 35404604 ~ 35409766 (-) True G55492
XR_005639223.1 other downstream 1279676 35269898 ~ 35277854 (-) True LOC120559165
TU75206 other upstream 121967 36681899 ~ 36724209 (-) True G56160
XR_005639341.1 other upstream 166664 36726596 ~ 36744132 (-) False LOC120559655
TU75262 other upstream 324933 36884865 ~ 36895490 (-) False rhoaa
TU75263 other upstream 324933 36884865 ~ 36895490 (-) False rhoaa
TU75311 other upstream 428853 36988785 ~ 37001151 (-) False phc2a

Expression Profile