RNA id: XM_039801029.1


Basic Information

Item Value
RNA id XM_039801029.1
length 4214
RNA type mRNA
GC content 0.48
exon number 17
gene id arhgef25a
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 21417136 ~ 21473374 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gaaggtcaCAACAGCAGATGAGAATAATTTGAGGAGAGTTTTTGTTTGCCGTTTGGGAAGAATGAAGGCTCTACAGAAGAATCAGGGACGCACTGACCAGATGTTGGGAGCCATGGCTGATGTGCTTACTTCTGTGGCCATGCCCAATCAACAGTTGCTCTCAGAGGGGGGTGAGGCGGACCCCCCATCAAGCGAGGAGGAGAAGGGGCCTGTTCAGGGCCAGTGGGAGTGGGAGCAGCAGGCCACtacaacagaaaacccagagcgGAGAGAAAGAACAGACTCATACTCGGCAGCAGGCAGCGAAGGCAGCATCTCCACCTCTGTGGCGTCACTGCCCCCGCCGGCATCAGGCAGCTCGGCCCCGAGCTCCCCAGGCTCTAGACGCTCTGTGAGCACGCTGAAGAAGTGGCTCACGAACCCTGTCCGCAAACTCAGCGTCGGGGCCACCGCCAAAGTGGAGCGTCAGGTCTGCAAACTTGAGGGAAAGCCTCCACCTCTTCCATCCCACAGCCACAGCCAGGATCTGAGCAGTCCCCTGAGGCCTGATGAACCTTTCCCCATCCTGCCCGTCACGCACAGAGAACTGGAGTGGAAAGATGGCCTGGCAAGCCCTGAGGACCTGTCTCCGGCTACACTACAGTCCCCCAGCTACATAACAGACTCGCTGATTGGCTGCACGTCACTTCCAAACAACCAGGACACTCAGTCCACCAGTCTTTTGCCAGATGACAGCGGCTCTGTCTTGATGGACGACACCTCCAGCCAATGGTCAGCTGCAGCTGACActgaggaggaaaggaggagtgCCTTAGAGAAAAGCATGTATGTACTGCAGGAGCTTATTGAGACAGAGAAGCACTATGTGGTGGACCTGGGGTTCATAGTGGAGGGCTACATGGCCACAATGCACTCCAAAGGTATGCCGGAGGACATGAAGGGAAAAGACAAGATTGTTTTTGGGAACATTCACCAAATATTTGACTGGCATAAAGACTACTTCCTGGGAGAGCTGGAGAAGTGTATAGCAGAGCCAGAGAGGCTGGCTCAGCTCTTCATTAAACATGAAAGGCGTCTGCACATGTACGTTGTATACTGTCAGAACAAGCCCAAGTCAGAACACATCGTCTCAGAGTATATCGAGACTTACTTCGAGGAGTTGCGACAGCAGCTGGGCCACAGGCTGCAGCTCAACGACCTGCTCATCAAACCTGTCCAGAGGATCATGAAGTACCAGCTGCTGCTCAAGGACTTCCTGAAGTATTACACCAAAGCTGGGATGGACACGGAGGAGTTGGAGAAAGCAGTAGAAGTGATGTGCTTTGTGCCAAAACGTTGCAATGACATGATGAATGTGGGCAGACTACAAGGCTTCGAAGGGAAGATCACAGCCCAGGGCAAACTGCTCCAGCAAGATACCTTTACTGTCATAGAGCAGGACAGTGGCTTTCTGTCCCGAGCCAAGGAAAGACGCATCTTCCTGTTTGAGCAGCTGGCCATTTTCAGTGAGCCAATCGACAGGAAGAAAGGTTTCTCACTCCCTGGATACATCTTTAAGAGCAGCATCAAGGTGAGCTGCCTGGGGGTGGAGCCCAGCGTGGACGGCGATGACGCCCGCTTTGTGCTGACATCACGCAACCCTGACGGGAGTGTGGTGCGCTTCCAGTTGCAGGCCTCCTCCCCTGAGATCTGCAGGGCCTGGGTCAATGATGTGGTTCAGATCTTGGAAAGCCAGCGCAACTTCCTCAATGCCTTACAGTCGCCTATTGAGTACCAGCGACGAGAGAGCAAGTCTAATAGCCTGGGCCGCAGCATGAGGCCCCCTCTGTCTGCTGCCAGTGCCCTGCGGCCCCACTCCTCCGCCTCTATTGACCGTCATAAGCTGCCCTCCCTTCACTCTCACAACACCTCCCTGCCCACGCTCTACCTGCCCAGCCAAGGTCAAGGCCAAGGACCCAGCGAGACATACTCACTGCAGGACCCCACTGTGGTCCAGCCATGCCCTGCTGACTCCCACACTGTTTCTCCGTCACAAGTCCAACTGGGCTTCACTGATCAGCCAAGCTGTCAAGCTGTGTCAAATGGGCTgtacacacccaacacacaaaGTGTACAGagagcaggagagggctGCCGAAGGGGTCAGGCTGCTGATGCTGAGAGCCAGGCTCCACTGTCAGGCCCCTTCGCTGGACGACGCCCCAGCAATCTGGCTCAGCTAGCCGAGGATGACCTATGAACCCTGATGCTATCTGTCTCCTGGGTCAGGAGGACAGCAGCTAACGCCACAACTGTGGAGACAAGAAGACTTGTCTACTGTCTGTTTATGCCAGGCTTGACCCTTAACTGGTTCAATCCTGGAGGATAATAAAGGAACCTGAAGGAAAATATGAAGGAACTATGGAACTATGGAACTATAAAACGACTTTGCTACTGTTTTTACCATTCAATGGTAGGTGACTAGTCTTGGCTATACCTTGAGTGTACATAAAACAGCACCCAGTGGGATGTTACTGTGCTCAGAGTGAAAACGCTCATGGACACTCAAGTGGTATGACAATTTATAAATTTTACCTTTTTGAGAGTTTGTACACCATACTCTTCTCTTTTTCAAAGAGCAAGGGGAATTGGTTTGATGTAGAAATATCCATTCCTAATTGGGGCGGTCACTGGAGTTATGCGTGTGCCTAAATATATGTTTATGCAACAATGTGTGGATGTGTTTAAGCGCATGAGAGTGTGCAAGGAGTGGCAGTGGCAACTCTTGTATCCTTTGGTAAATTTCCTTGATAAAGTTTCTGATGCCCCATTGTAAAGACAAGTACAGCTACATTTATACATTCTGTCATTCCCCTGCTGACAACTGAGTTTGCTGTTTGTGTCGACAAGAATGGAAAAGGCAGAACACTTGATGTGAACACGCCACCAGGAATTTACTCACTCGAATTTCAACTTAAAGCAAAGAACTTTCTTTCTTGCCACAGTGTTGAGAGCCCCTGTGTGCTCTCTTATTCTGTTTGAGCGGCCCTCGTTTGATCTGGACAAAAAAGGCGTGAGGGGTCCCCCTGGAGGTTCTCTGTGGGTATGACGTCACTTTGGAATACTTTTTGCTCTTTGGGCAACTCCAGAGGAGTTTGCGAGGTGCATTCAAAGGGACTGCTGTGCTGACCCAAAGTGTTGCATGCAACATCTCCTTTGTGATTGACTGACACAACTTTACACAGCTCTTTCTGTCCAAGCCGAAGTAGAGTGCTTGTGGTTTGGGTGAAAAGTGCATTGGTTTAAACTTGTTTTATTAGTCCACTGTTGTAATGTCAAGGCTGTGCACCATTTCTATAATCTCTGTTAGCTTTTGCCCTCATGGACTAAATACTGTACAGTGCATACCATAAAGTCAATCATACATTTCCACTTGTAAGATGAAGAATGACCCAGGTATGCCAAGAAATGTTCCAGTTCCAGTTCGTTCAAATGAAGGATAATATATTGCTGGATAAACAGAGTGATGAATCTGCATGCTTCCGCTTCCTCAGACAACAGTGCCAAAAAAGCAGCTCACTACTTAAACGTTTCATGCTCTTACTTGTAGTTTACACTCAGTAGTTTCATGCTCTTACTTGTAGTTTACACTCAGTAGTTTCATGCTCTTACTTGTAGTTTACACTCAGTAGTTTCATGCTCTTACTTTTAGTTCAGTTTGCCACTACACTACAAAACAATAATAGATATCTGTGTTACTATCTGGATTGTAATGCCTAAGTGATAAAACGAGAGTGGAGTAGATAAAGGAGGCAATCCCGTCAATATCACTTATTCTCTGTGGCCAGTAGAGGTCCCCACAAGGCTTTCACTTCCAACTTAGTTAGATAAAACAGCTGCACCAAAGATCAataggcctcatatttcagtgCTCATGCTGAAGTAAAGCTGCTCAACAATCTGTCCGAAACACAATAATAAATTTCACAAAATTAACTGAAATGTGAAACATTAGGTGAGTGGAACCATCTCACAGAATCCCTCTGCAGTTAATGTGAACTGGCATGTTTTCATTGGAATTACTCATCaggcagtttttcttttaatacaaagtaataCAACTACAGAGAACCAAGGGCAAGGACATCAAACCAGGAGAAGGTTGGTTAGAGCTATGTTTGACTGAGTAGAAACTGTTGTATCATATCAAATAAAAAGTGTCTTTTTGAAACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69145 lncRNA upstream 35887 21379001 ~ 21381249 (+) True G51761
TU69122 lncRNA upstream 40873 21376031 ~ 21376263 (+) True G51739
TU69121 lncRNA upstream 50106 21366676 ~ 21367030 (+) True G51738
TU69120 lncRNA upstream 50559 21366301 ~ 21366577 (+) True G51737
TU69119 lncRNA upstream 51081 21365621 ~ 21366055 (+) True G51736
TU69202 lncRNA downstream 104014 21577388 ~ 21578255 (+) True G51811
TU69283 lncRNA downstream 243790 21717164 ~ 21720123 (+) False birc5b
TU69314 lncRNA downstream 339238 21812612 ~ 21813631 (+) True G51900
TU69318 lncRNA downstream 346491 21819865 ~ 21820675 (+) True G51902
XR_005639358.1 lncRNA downstream 421967 21895341 ~ 21896456 (+) True LOC120559724
XM_039799357.1 mRNA upstream 57149 21323314 ~ 21359987 (+) True kmt2d
XM_039801053.1 mRNA upstream 99214 21312552 ~ 21317922 (+) True dhh
XM_039801052.1 mRNA upstream 99214 21312552 ~ 21317922 (+) False dhh
XM_039801051.1 mRNA upstream 108968 21295147 ~ 21308168 (+) True lmbr1l
XM_039801064.1 mRNA upstream 148890 21263048 ~ 21268246 (+) True wnt1
XM_039801608.1 mRNA downstream 25332 21498706 ~ 21504920 (+) True slc26a10
XM_039801612.1 mRNA downstream 79878 21553252 ~ 21555195 (+) True LOC120559688
XM_039801613.1 mRNA downstream 133965 21607339 ~ 21620201 (+) True c1galt1a
XM_039801687.1 mRNA downstream 243735 21717109 ~ 21720118 (+) True birc5b
XM_039801682.1 mRNA downstream 264106 21737480 ~ 21746717 (+) True zgc:153867
TU69117 other upstream 52706 21361290 ~ 21364430 (+) True G51734
TU69116 other upstream 53496 21361290 ~ 21363640 (+) False G51734
TU69094 other upstream 126174 21289588 ~ 21290962 (+) True G51716
TU68644 other upstream 884674 20446243 ~ 20532462 (+) False LOC120559772
unassigned_transcript_229 other upstream 1091895 20325169 ~ 20325241 (+) True trnaf-gaa_3
TU69195 other downstream 85516 21558890 ~ 21559349 (+) True G51804
TU69309 other downstream 309892 21783266 ~ 21788322 (+) False LOC120559721
TU69347 other downstream 430168 21903542 ~ 21904077 (+) True G51926
TU69454 other downstream 583347 22056721 ~ 22060645 (+) False avpr2aa
TU69473 other downstream 620531 22093905 ~ 22094890 (+) False LOC120558641

Expression Profile