RNA id: XM_039801032.1


Basic Information

Item Value
RNA id XM_039801032.1
length 1431
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC120559367
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 40580671 ~ 40594368 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGTTCACCAGCTGCTCATCTGCAGTCAGACCCAGACGGAGAGGACCAGAGGAGAGACGAGGATGGAGAGACTTCTTctgaccatcatcatcatcgctgGGGCAGGGCTGAGTGCTGTCTCATCAGCTGCTGGACGTCAGTACTATTTTGTTTATGACAGGAAGAACTTTACTGAAGCCCAAAGATACTGCAGAGAGAAATACACAGACCTGGCCACTGTAGACAGCATGGAGGTTATGAAGATCCTGAACAACATGGCAGATTTAAGCAAAATGGTCTACCCCACATACAGCTCTAGAGCCTGGATAGGACTTCATGCTGACAGCTGGAGGTGGTCACTGTCAAACACAAGTTTCTACAAACCTGGGGAGACGGAGTTCAGACGATGGGGGGGTGGAGAACCAGACGCTCGATACAGTGATAAAGCCTGCGCAGGGATGTATCCTTATGGTGACTGGTATGACCACGGTTGTGACAACAGGTGGTATACAGTCTGCGCAGATGTCAAAGGGTCAAAGGTGACTTTTGTCGTCGTCAACACCTCTATGACATGGCCTGAAGCCCAGAGCTACTGCAGAGCTCACTACACAGACCTGGCCAGTGTGAGAAGCGCTGCAGAGAACAAGAAGGTACAGGAGGCGGCTGGAGGAAACTGGGTCTGGATCGGTCTTTCTAGAGACTCCTGGAAGTGGACAGATGGAAGTAACTCCTCATTTAACTTCTGGAAGGTCGGCCAACCTGATAACAAGAACAGGAACGAGATTTGTGTGGCTGCGGActtcagccaatcaggagcCTGGGAGGACTGGCCCTGTGACATGGAGAGAGCGTTCATTTGCTACGGTCCAGTGGTGTCAAAGAAAGTGATGAAAGTGAAGTTTGAGAACAAGAAGAATCTGGATCTGAATGACCCTGCTGTGATGGAGGCCATGTTGAAGCAGCTGAAACAGAAGCTGAGGGCCCAGGGGCTGGACGACAATATTAAACTGAGCTGGAGGAAGCAGGCTGATGGAAAAGTCTTCCACAAGGAAGACAAGAAGACcaacaagaggaggaggaagagggaggagctGTAATGTTGAGTTGCTGCGTCTGCTTTCATCAGAGAAAAGTCTGGTTCTTTCCTCAGATGTGACGGAGCAGAATAGAGCTGCACCAATCAGCTGATTCATCCATTATTCTCTATTATGTAATGAATAGTTtagttttcatttattattgttGTAGTGATTCTTACATTCTTTATTTTAGGTTACATAACATTTTACTCAACTAAAATATGCATCCCAGCCTCCGTACGTTTACAATCTTATTCTGTAAATGTTGCCGAACATCAACAGAGATCTTGAGTTTCTtatgagtagggttgggtactgagaCCCGGtactaatacggcaccggtgcttAAACGACCGGTATCTATCGGACCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76651 lncRNA downstream 33756 40493149 ~ 40546915 (-) True G57073
TU76601 lncRNA downstream 121278 40386363 ~ 40459393 (-) False G57032
TU76698 lncRNA upstream 123815 40718183 ~ 40794862 (-) False G57110
TU76691 lncRNA upstream 149596 40743964 ~ 40774662 (-) False G57104
TU76690 lncRNA upstream 156776 40751144 ~ 40774662 (-) False G57104
TU76703 lncRNA upstream 158869 40753237 ~ 40771432 (-) True G57114
TU76699 lncRNA upstream 170221 40764589 ~ 40794862 (-) True G57110
XM_039800490.1 mRNA downstream 14177 40536072 ~ 40566494 (-) True LOC120559070
XM_039799943.1 mRNA downstream 326406 40251556 ~ 40254265 (-) True LOC120558739
XM_039799936.1 mRNA downstream 447818 40039985 ~ 40132853 (-) True gripap1
XM_039799937.1 mRNA downstream 447819 40039985 ~ 40132852 (-) False gripap1
XM_039799446.1 mRNA downstream 952194 39466226 ~ 39628477 (-) True plxna3
XM_039801036.1 mRNA upstream 4437 40598805 ~ 40602090 (-) True LOC120559370
XM_039801033.1 mRNA upstream 43323 40637691 ~ 40647772 (-) True LOC120559368
XM_039801034.1 mRNA upstream 43323 40637691 ~ 40647757 (-) False LOC120559368
XM_039801035.1 mRNA upstream 66441 40660809 ~ 40669343 (-) True LOC120559369
XM_039801396.1 mRNA upstream 182666 40777034 ~ 40836209 (-) True LOC120559573
TU76071 other downstream 966434 39550498 ~ 39614237 (-) True G56721
TU76067 other downstream 1046031 39509552 ~ 39534640 (-) False plxna3
TU76064 other downstream 1120797 39397765 ~ 39459874 (-) False G56718
TU75886 other downstream 1337933 39237644 ~ 39242738 (-) False G56599
TU75880 other downstream 1378245 39198738 ~ 39202426 (-) False G56598
TU76679 other upstream 66657 40661025 ~ 40661886 (-) False LOC120559369
TU76612 other upstream 239730 40834098 ~ 40903924 (-) True G57041
TU76607 other upstream 283514 40877882 ~ 40884606 (-) True G57036
unassigned_transcript_237 other upstream 346486 40940854 ~ 40940926 (-) True trnak-uuu_8
unassigned_transcript_238 other upstream 351087 40945455 ~ 40945527 (-) True trnak-uuu_9

Expression Profile