RNA id: XM_039801163.1


Basic Information

Item Value
RNA id XM_039801163.1
length 5691
RNA type mRNA
GC content 0.53
exon number 31
gene id lamb2l
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 33618623 ~ 33684274 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCATCATGAAGTTTAAGACTTTCCGACCTGCAGCCATGTTCATCGAGCGTTCGGCTGATTTCGGCCGCACTTGGCGCCCCTACCGCTACTTTGCCTCAAACTGTACCAAGACCTTTCCTGGCATCCCCGCCAACGGCCTGCACTACATCAACGACATCATCTGTGAGGAGCGCTACTCCGACATCGAACCCTCCACTAATGGAGAGGTCATTTATAAGGTTTTGGATCCCGCCATTCATGTGAAAGACCCATACAGCTTGGACATTCAAGAACTTCTGCGTATTACCAACCTGCGTATCAACTTTACCAAGCTTAACACTCTGGGAGACGACTTGCTGGACCGACGCTTCGATGTCCTGCAGAAATATTACTACGCCCTCTATGAGCTGGTGGTCAGAGGGAGCTGCTTTTGTTACGGACACGCCTCAGAGTGCGCCCCAGTGCCAGGGGTGGACTCCCGGGAGAACGGCATGATCCACGGTCGCTGCGTATGCAAACATAATACAGAGGGCCTGAACTGCGAGCGCTGCCGACATTTCCACAATGACCTGCCATGGAGACCAGCGGAGGCAGAGAACCCACATACCTGCAGAgAGTGCAATTGTAACGGCCACTCAAGCCATTGCCACTTCGACATGGCTGTGTATTTGGCCACGGGCAACATCAGCGGAGGAGTGTGTGACGACTGTCTGCATAACACCATGGGACGCAACTGTGAGATGTGCAAACCTTTCTACTACCAAGACCCTATTAGGGATGTCAGGGACCCACAGGTCTGCATAGCCTGTGACTGTGACCCAGTCGGATCAACGGAGGGAGGAGTGTGTGACAGTCACACCGACCTGGACATGGGCATGATCTCGGGACAGTGTCGCTGCAAAGCCAATGTCAAAGGCACGCGCTGCGACGACTGCAAGGAAAGTTATTACGGACTCAGCCAGAACGACCCGCTGGGCTGTCAGcCTTGCAACTGTGACCCTCGTGGCATCATCATGATGGGAGCTCCTTGCGACCAGATCAGTGGGGACTGCTCCTGCAAAAGATATGTCACTGGTCGCTACTGCAGCCAGTGTCTGCCTGAATACTGGGGGCTCAGTAACGACTTGGCCGGCTGCAGACCATGCGACTGTGACTTCGGTGGAGCCTTCAACAACAGGTGCATGATGGAGAGTGGCCAGTGTGACTGCAGGAGACACCTGATTGGTCGACAGTGTTCAGAGGTTCAACCTGGGTATTTCTGTGCGCCGCTGGACTACTACAAATACGAGGCAGAAGACGCCACTGGACACTCCCCCGGTGACTCTGCACTGCCGGGCAAAGTTCGTCCTCAAGCAGAGACCGACTGTGTTCAGCACCTCAGCAACCAGCTGAGGAGGCACCGACGTCACCGTCGCATCACCAACTCGCAGCAACATCGGGCAGCGCTGAGACGTATCCGCCAGCTTCAACAAACAccggATGTGAGGCCCGTTCATAGAGAGCACACTCCCAGCCACATGGTGACGTGGACAGGACCTGGTTTCGCCCGTGTCAAAGATGGTGCCGGCCTGGTGTTCACTATCGACAACATCCCCTACGCCATGGAGTACGACATCATGATCCGCTACGAACCtgagtccacAGAGGACTGGGAGGCTATAGTTAGTATAACATCTGTAATGCTGCCGTCCAGTCTCCGGTGTGGAAACCTCCTACCAACTGAACAGCTCTATACAGTGACCCTGCCGCACCGCAACAGATACATCCAGATGCCCAGGCCATTCTGTTTCGAGCCCAGTAATCGTTACGTGGTGTCAATCAGGTTCCAGCGCCACAgggtcacacacagacatctcaCTGCTTTCATTCTTATTGACTCGCTGGTCCTGATCCCCAAATACACTGAGCTTCCTGGTTTCCAAGGTAACGAGCCAGAGGCAGAGCAGCGGCGGGAAGAGATGATTCGCTACATGTGTCTGGATTCCTTCATGATCACGCCGATGCCCGCCCTGGCTGAGATGTGCTCCAAACTCATCTGTAGTATTTCATCCATCATTCACGATGGTGCTCTGTCCTGTCAGTGTGACCCTCAGGGCTCCCTCAGTGGTGAGTGTCATAAGGTGGGAGGCGATTGTCATTGTAAACCCAACGTGATGGGTCGACGCTGTGACCGGTGTGCCCCAGGAACCTACGGCTTTGGAGCGAACGGCTGCACTGCGTGTGACTGCCACTCAGAGGGTTCATTGAGCCACCAGTGTGACCCGGTTACAGGCCAGTGCCAGTGCAGGCAGGGAGCCACTGGGCGCCAGTGCTCAGACTGCCAACCAGGCCAGTGGGGCTTCCCCAGCTGCAGCCCCTGTCAGTGTAACGGCCACGCAGACATCTGTGACCCCCGCAGCGGGGAGTGTAGAGACTGCAGGGACTACACAGCCGGACACCTCTGCGAACGTTGTGCGGATGGGTTCTTTGGAAACCCGGTGCTTGGTTCAGGGGAGCACTGTCGGCCCTGCCCCTGCCCTGGTAACCCCGGCTCAGATCACTTTAATGCGCACTCCTGTCACGCTGACCACACCTCTGACCAGATCATATGTAACTGCAGGCAAGGCTACACTGGGCTCCGCTGTGACCAGTGTGCCCCTGGTTACCATGGCAACCCAGAGCAACCCGGCGGGCAGTGCCTCCCGTGCGAGTGCAACGGCAACATCGACACCAAGGACCCCGGCTCATGTGACCCCCGGACTGGCCGATGCCTCAAGTGTCTGTACCACACTGACGGTCCGTCTTGTGGACACTGTCAACACGGTTACTATGGCAATGCTTTGGCCCACGACTGCAGACTTTGTACCTGTGTGACTGCTGGCACCGTCCAGTCTGCTTGCAGCGATGGACACTGTCACTGTGACCGGCAGACTGGAGCCTGCACTTGCAGGCAGAACGTGGCCGGCCATAACTGTGACCAGTGTGCTCCTAACCACTGGAACTACGGTCAGGACCGAGGCTGTGAGCACTGTGGCTGCGACCCACGACACGCACTTGGAACTCACTGCAACATGTTCACCGGCCAGTGCCAGTGTCGTCCAGGCTTTGGAGGTAAACAGTGCACTGAGTGTGAGCAGTTCCACTGGGGAGACCCACGGCTGCAGTGTCAAGAGTGTAACTGCCATCCGCTGGGCTCAGAGATGGCCCAGTGCGACCGATCAACGGGGGCGTGCGAGTGCAGGGAGGGAGCGGCGGGGAAGCGCTGTGACGAATGCGCTCGTGGCTTCACCGGCGACTTCCCCAAGTGTGTCCGGTGTCACCCGTGCTTCCAGCAGTGGGACGATGCGGTGTGCCAGATCAAAAGGGACCTGGAACACATCCAGTACGCCGCGCAGAAGATCCTGGAGGGCGGGGTCACGCCGGGAGTCGGGGACACACGCATCAAAGAGCTGGAGAGGAAGCTGAAAGAAGTGCAGGATCTGATCAGTACGGAGGACAGCGACAGGATCCACCAGCTGATTGGACAGAGCATCGATGACCTCAGGGCTGAGATCGCACTGACCGACGGGCGTCTGATGGGCGTCACGCGAGAGCTAAATACAACAGCACAAGAAGAAGAGGCACTGAAACGCACATTGAGTGTCCTAGAGAGAGAGCTGAGGGACGTCAACGCCACTGTGGCTCAGAAACAGCGCCTGCTAGATGACTACCTCACCTCCGGATTTGCAGATCAGTTTGAGAAAGTGAAGAAGTATTATCAGGAATCGGTGAAGGCTGAGGAGAAATGCAACGCTTCAGTGTCCGGTCCTCTCAGTCCCGTGGAACAGTCCAAAGAAACCCGCGCTGTCACTGAAGACCTGCTGGACGCCAGCAAAGACAAGTTCCTCCGCACTCTGGCTGCTCAGAACAAATCCTTAAcagagctgcagcagaaagcCCACGACCTGGACAAGAAAGTCCATCACCTCAGTCACAAGGTATGTGGTGGTCATAGCAATGCCAGTGTCAATGGCAGTTGCCCAGACAGCCAATGCGGCGGTGCCGGTTGCCGCGACGACCAGGGCAATCGTGTATGTGGAGGACATGGATGCAATGGGACAGTGAGCACGTCTGTAACAGCACTGAATCATGCCAGGAACGCCACTGACGGTCTGAACGCTGCCAAGGAGGAGCTGCAGAGCGTGGCGAGaaagCTCCAGGATATAGCCTCTCTGACACAGGATGTGAAGAACCAGGCGATGAACACGCTGAAGAAAGCCCAGAAGAAGAAGGACCActttgaaaacaacaacaagaagcTCAAAGATTTCATTAAGAAGATCCGAGACTTCCTCACTGAGGAGGGAGCAGATCCAGAGAGCATAGAGAAGGTGGCTCTGCAGGTGTTGTCGATCACCCTGCCGTTCAACAAGACCACCCTGGACAAAATGGTCATGCAGATAAAGGACAGCCTTTCCAACCTCACCAACATCGAGGGGATCGTCAACCAAACCTCGCAGCACATCGGCAAAGCCAAGGAGCTGCTTGACAAAGCTAAAGATGCCAAGAGCCGAGCAGAGGCAGTGAAGGATACAGCCAATAATACCAAGCAGGCATTGGATGTGTCTGAGAAGGCCATAGAGAAAGCCAGAGCAGCCCTGAAGGAGGCCAACAACAACCTGAACAGCACCAGGAATGCTACGGTTGAGGTGGATGAGAGGCTAACGCAGCTGGAGATTAAGCAGATGGATGTCATGATGCGTTTAAACAACCTTTCCATGGAGGTGGAAGCTCTGAGGAACAAGACGGAGCAGAACAGACAGATGGCAAAGGACGCCGTAGCACTGGCTAACAACGCCACACAAGTAGCATCCTCACTTGAGCAGAGTCTCAACGACACGGAGAAGCTGTACCAGGAGCTGCAGATGAAACAAGGCGGGGAGTCTGGAGGTCTGGACGGCATCAACCAGAAGGCTGAGGACATGAAGAAGGAGGCAGAAGACCTCTTAAGCAAAGCCACCAAGGGGATAGAACAACTCAAGAAACTGGAGAAAAAGTTCAAGAGCAACGAGCAGCGGATGCAGAAGCAGCGCATGGAGCTGGACGAGCTGAAGCAAAACGCCACCTTGGTGCGGGATGACATCCGGGAACAAGTGCAGAAGTACAGCAACTGTGTGTGAGGATGTTAACAGTTCCACCGTTTACCGTTTGCTGCTGTAGTCCAGAACAGAGTTATGACTGATGCTGTGACACAAAAAACTAACTTTGGTACCTCCATTCTTTCACTGGCATGTCAAGTTTTACACATTACCTGTCAAGTGTTATATCACAGAAATGCCTTCCTCTGTCCATGTACTGTACCACCAACATTGTCCTATATGGTGTTTATGTCTTTAAGCTATTCAAATTCATTGTATAGACCATGATAATTGATTTCATGAATAATAAACAGAAGAAATATATCAGTATATGTTATCAGAAATGTGTTGTCTTGACCAAAAGTGCTTTTAAGAAtttgtgtctttgctgtaatttgACCACATTAATATGGTATTTACAAGATGACATTCCTATTAAGAAATATGTGGAAAAGTTTGACTTTTGAAATGaaattatgcttattttttattacaaaagaaACTCTTGATTCAATaaatatacatgcatacacaagtATTCTTATAAGCAGAATTCATACTGAGGTGTGATGACGGAGACGAATAAATGTGATACAGTTTATGTAAATTCATTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73443 lncRNA downstream 60964 33555800 ~ 33557659 (-) False lamb2
TU73444 lncRNA downstream 61053 33555800 ~ 33557570 (-) False lamb2
TU73395 lncRNA downstream 110200 33507434 ~ 33508423 (-) True G54949
TU73393 lncRNA downstream 111400 33506362 ~ 33507223 (-) False G54947
TU73392 lncRNA downstream 111934 33504868 ~ 33506689 (-) True G54947
TU73500 lncRNA upstream 102424 33750289 ~ 33757122 (-) True G55034
TU73523 lncRNA upstream 183184 33831049 ~ 33831559 (-) True G55050
XR_005639136.1 lncRNA upstream 209586 33857451 ~ 33875420 (-) True LOC120558540
TU73569 lncRNA upstream 218089 33865954 ~ 33951682 (-) True G55093
TU73568 lncRNA upstream 268230 33916095 ~ 33950009 (-) True G55092
XM_039799432.1 mRNA downstream 3683 33556681 ~ 33614940 (-) False lamb2
XM_039799431.1 mRNA downstream 3683 33556681 ~ 33614940 (-) True lamb2
XM_039799427.1 mRNA downstream 64438 33527175 ~ 33554185 (-) False usp19
XM_039799262.1 mRNA upstream 48982 33696847 ~ 33710767 (-) True si:rp71-17i16.5
XM_039800458.1 mRNA upstream 82465 33730330 ~ 33731472 (-) True LOC120559034
XM_039799669.1 mRNA upstream 115918 33763783 ~ 33764604 (-) True taf13
XM_039801839.1 mRNA upstream 307461 33955326 ~ 33963940 (-) True LOC120559811
XM_039801837.1 mRNA upstream 307461 33955326 ~ 33961162 (-) False LOC120559811
TU73247 other downstream 731333 32880193 ~ 32887290 (-) True G54834
TU73146 other downstream 845137 32767357 ~ 32773486 (-) True G54756
TU73036 other downstream 1296671 32316960 ~ 32321952 (-) False LOC120558955
TU73035 other downstream 1305845 32306922 ~ 32312778 (-) False LOC120558955
unassigned_transcript_235 other downstream 2391492 31227060 ~ 31227131 (-) True trnaq-uug_1
TU73607 other upstream 376153 34024018 ~ 34127495 (-) False G55124
TU73620 other upstream 440105 34087970 ~ 34093118 (-) True G55131
TU73610 other upstream 470039 34117904 ~ 34127495 (-) False G55124
TU73658 other upstream 642541 34290406 ~ 34290887 (-) False ntsr1
XR_005639223.1 other upstream 1622033 35269898 ~ 35277854 (-) True LOC120559165

Expression Profile