RNA id: XM_039801164.1


Basic Information

Item Value
RNA id XM_039801164.1
length 2460
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC120559463
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 25815356 ~ 25819330 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGaaatattttctggtttctctgtgtctcctgGAAACATTTCTACATGTCTTGGCTCAATGTGTCCCAGCCTCAGAGTTTCAGCTGGAAGGAGATTATTTGTTAGGTGGACTTTTTAATGTTCATCATGATAGTGACCCTGTTTATCACGACAGACCAGAAGCCATCGACTGCTCCAGTGAAACTCTGGTCAATTCAAGTTATCGGAGGTTTCAGTTGATGAGATTCGCTGTAGAGGAAATCAATAACTCGACCACCCTCCTGCCAAATGTATCTCTCGGCTATGAGATATTTGACTACTGCTCAGATACCCGAACATTCCCAGGCATTTTCAAACTCATATCAGACGACAATGAGTTGATCCAACCTGGGGGTAAACTACACAAGAATCGGTCCAAAGTGATAGCAGTGGTCGGCGCCTCTACAAGCACGCAATCCCTGACTGTAGCCCCACTCTTCACAATGAATCTCCTTCCTATGGTCAGTTATGGATCTGCAAGTTCTGTCTTTTCAAAAAAACAGAATTTCCCCTCTTTCCTACGAACATTGCCTCCCAATCAAGTCACCATAGAAGTGATTGTTAATATTCTTCAGCACTACAACTGGCGCTGGGTTGCTTTCCTTTACATTGATGATGATTTTGGCAAAGATGGACAGGAATTGTTCATAAAGAGAATTAAGGACACTGAGATCTGCCTGGCATACACCCAAGGCCTCAATCAATATACAGATTACTCCCAAATATTCAAACAGATAGAAGCACAGAGGATAGGTATCATTATTGTTTTTGCTCCTGAATGGGCTGCTCAACCTCTCCTTATGTCAGCAATACAACTAAATGTCACCAATAAAGTGTGGATAGCAGTGAATACATGGTCGTTAAACAAGAAGCTCCCCAAGGAGAAAGGAATCAAAAATATTGGAACTGTAATTGGGTTTTCTGAGATAGCACTGACAATACCTGGTTTCAgtgattttatttattcttccaGAAGCCTGACTCATTGTGAAAATgcagaactttttttttgtaatcagGCGTACAACTGCAGCAGCCCAAGTGCAGAAGATGTCATAGCTGCTGAGCCAACTTttaatttttatgtttattctgCTGTATATGCCATCGCTCATGCCTTACACAATGCCTTGCAATGTGGATCTGCCAGATGTAATCGCAATATTACAGTGTACCCACGCATGGTTCTAACAGAGCTGAAGAAGTCAAACTTCACAATTTTAAATCAGAGGATTCGGTTTGATGAGAATGGTGACCCCAACTACGGATCATTTTCTATAATTTTCTGGAACCAAAGTGGTGATGCAGAGGTGATCGGCTTTCATAATTTACACCCACCGTTCCATTTCTTCATCAACGACAGCAAAATGCAGTGGTACACAGAGGGAGAaGCGCCTACTTTACCGTGTTCCCCAGAATGTCGTAGAGGATATGCAAAAAAGTATAATGGAATCCACAAATGCTGCTTCGATTGTGAAATGTGTCCAAATGGAACTTATGTCAACAGCACAGAGGATCCCTACAAGTGCATCAACTGTAAGGAGACAGAATGGTCAGCAGCAGGAAGTACATCATGCAATCTGCGGGTGGTGGAGTACATCCCATTCACAGACAGTGGGGCTATACTGATCATGGTCGGGGCCTCGGCATTGGTGGGCCTCACATTAGCCACGTCTGTTCTCTTTGCCATCAACTACAACACACCTGTTGTCAGATCTGCTGGGGGACCAATGTGCTTCCTGATTTTAGGCTGCCTCAGCCTGTGTTGTCTTAGTATATTCTTTTACTTTGGTAAGCCAACAATTTCCTTTTGTATCTTAAGATTCTTACCGTTTCTCTTGTTCTACACTGTTTGTCTAGCATGTTTTGTTGTGCGCTCGTTTCAAATTGTTTGCATTTTCAAAATGGCCGCCAAGTTCCCCAAGCTTCACAGTTGGTGGATGAAATATCATGGACAATGGCTGGTCATCACTGTGGCATTTGTTACTCAGGCACTCTTTCTTCTTATTGGCTATACTTATTCTCCCCCCAAGCCTTACGATGACATTTCTTGGTACCCAGACAAAATCATACTTGTTTGTGATATTAATCTCAAAGCATCCTCTGGTTCTGTGGTTTTACTTTTATCTTTGGGCTCCCTTTGCTTTATTTTCTCCTACATGGGAAAAGACCTCCCAAAAAATTACAATGAGGCCAAAGCAATAACCTTCTGCCTGCTCCTGCTGATCCTCACCTGGATCATGTTTGCCACTGTATACATTCTGTACCGTGGCAAGTACATCCAAACTCTTAACGCTCTGGCAGTTCTCTCCAGTCTCTATTCCTTTCTGTTGTGGTATTTCTTcccaaaatgttttattatcatttttCAATCGTACAAAAACACGCAGGAGTACTTCCAAGGTCTCATTCAGAATTATACCAAAACAATCAGCCAGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70912 lncRNA upstream 4309 25809713 ~ 25811047 (+) True G53056
XR_005639163.1 lncRNA upstream 799958 25009989 ~ 25015398 (+) True LOC120558677
TU70673 lncRNA upstream 855253 24959816 ~ 24960103 (+) True G52892
TU70634 lncRNA upstream 870205 24940795 ~ 24945151 (+) False LOC120559118
TU70635 lncRNA upstream 870205 24942240 ~ 24945151 (+) True LOC120559118
XR_005639231.1 lncRNA downstream 175903 25995233 ~ 25997094 (+) True LOC120559215
TU70971 lncRNA downstream 252255 26071585 ~ 26076664 (+) False G53096
TU70974 lncRNA downstream 252255 26071585 ~ 26076664 (+) True G53096
TU70988 lncRNA downstream 277029 26096359 ~ 26099635 (+) True G53109
TU71139 lncRNA downstream 505891 26325221 ~ 26325468 (+) True G53221
XM_039801246.1 mRNA upstream 9195 25794731 ~ 25806161 (+) True rer1
XM_039801247.1 mRNA upstream 9195 25794731 ~ 25806161 (+) False rer1
XM_039800141.1 mRNA upstream 22131 25765160 ~ 25793225 (+) False tp73
XM_039800773.1 mRNA downstream 4438 25823768 ~ 25829902 (+) True LOC120559218
XM_039800774.1 mRNA downstream 15216 25834546 ~ 25840432 (+) True LOC120559220
XM_039800772.1 mRNA downstream 34404 25853734 ~ 25857881 (+) True LOC120559217
XM_039800775.1 mRNA downstream 47433 25866763 ~ 25867978 (+) True her3
XM_039800766.1 mRNA downstream 181962 26001292 ~ 26050486 (+) False espn
TU70864 other upstream 67039 25743610 ~ 25748317 (+) True tprg1l
TU70648 other upstream 858026 24953442 ~ 24957330 (+) True G52871
TU70197 other upstream 2050203 23759234 ~ 23765153 (+) False tmem201
TU69870 other upstream 2968418 22842066 ~ 22846938 (+) False lamtor5
XR_005639388.1 other upstream 3252835 22562154 ~ 22562521 (+) True LOC120559933
TU70970 other downstream 252255 26071585 ~ 26076664 (+) False G53096
TU71155 other downstream 533130 26352460 ~ 26353463 (+) True G53232
XR_005639211.1 other downstream 560346 26379676 ~ 26382295 (+) True LOC120559113
XR_005639212.1 other downstream 560346 26379676 ~ 26382295 (+) False LOC120559113
TU71269 other downstream 980766 26800096 ~ 26800746 (+) True G53305

Expression Profile