RNA id: XM_039801205.1


Basic Information

Item Value
RNA id XM_039801205.1
length 2600
RNA type mRNA
GC content 0.46
exon number 16
gene id ctnnbl1
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 30988074 ~ 31057576 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAACCTAACTGGTTTACGGCAAGCATGTGCATGGTGGAAATCTTGTTGTTTTCTGTATCGCAAGCTGCTCTAGTGTAGCTAATCTCTGATTTACTTCCTAAGCTTGAGCAAAACCTTCTCACGTTTAGGTTTTTAACCCGGAGACATGGATGTTGGAGAGCTCCTAAACTATCAGCCTGATAGAGGAGCAAAGCGTCCCAGGGAGGAGGATGGAGGGGCAGCGGGCAGAGATGAGGACTCCAGAGGTGGAGGGAAGCAGCAGAAAGGGCTAAGTGCCAGGGAGTTGGCCAGATACCGGGAAGCAGGAGTAGGACTGGAAGGAGGGGGTGACCTGAGGGAGACTGAGGAGCTGGCATTGGACAAGAAGAAGATCCTGGAGAAACTGATGGACCAGGATGAAGAAGAACCTGAGGCAGAGCCAGTGGATGAGAGTTCAGTGAAGAAAATGATCCTAACCTTTGAGAAAAGGTCGTACAAAAATCAGGAACTAAGGATTAAGTTTCCGGACAACCCAGAGAAGTTCATGGAGTCGGAGCTGGATCTGAATGACATCATCCAGGAAATGCACGTGATCGCCACAATGCCAGACCTCTACCACCTGCTGGTGGAGCTTAATTCCGTCCACTCACTGCTGGGCCTCCTCAGTCATGAAAACACAGATGTTGCCATAGCAGTGGTGGACCTGCTGCAGGAGCTGACAGATATCGACACACTCCAAGAGAGCGAGGAGGGGGCTGAGGTACTCATAGATGCTCTGttgGAGGGTCAAGTTGTGGCCTTGCTGGTGCAGAATATGGAGCGGCTGGATGAGCAGGTGAAGGAGGAGGCTGATGGCATCTATAACACACTGGCTATCGTAGAAAATATGGCAGAGTTCAGACCAGGCCTGTGCACCGAGGCAGCTCAGCAGGGACTCATGCAGTGGCTGCTCAAGAGAATCAAGACAAAGATGCcgtttgatgctaacaagctgTACTGCAGTGAAATCCTGGCTATCCTGCTACAAAACAATGACAATACCAGAGAGTTATTGGGAGAGATGGATGGCATTGATGTGTTACTGCAGCAACTATCTGTGTTCAAACGTCACAACCCATCCACAGCTGAGGAGCAGGAGATGATGGAGAACCTCTTTGATGCTCTGTGTTCCTGCCTCATGCTGGCAGCCAATCGGGACCGTTTCCTCAGAGGGGAAGGGCTTCAGCTAATGAATCTCATGCTTAGagaaaagaaaatgtctcGAACCAGCGCTATGAAGGTCCTGGACCACGCCATGATTGGACCAGAGGGAGCAGATAACTGTCACAAGTTTGTAGACATCTTGGGCTTGCGGAccatctttccacttttcatGAAAACCCcaaagaagatgaagaaaacTGGTGCTTCAGAGAAGGAGCATGAAGAACACGTCTGCTCCATCATCGCCTCCATGCTGAGAAATCTCAAGTCCCAACAGAGGAGCAGACTCCTCAACAAGTTCACAGAGAATGACTGTGAGAAGGTTGATCGACTGATGGAGATGCATTTTAAGTACCTGGAGGCTGTTCAACAGGCGGACAAGAGGATTGAAGGAGAGAAGCACgaGATGGTTCGTCGGGGAGAGATCCTAGATGACGGCATTGAGGATGACTTCTACCTTCGCCGCCTGGACGCCGGGCTATTCGTCCTTCAGTTGATCTGCTATATTATGGTGGAGATCAGCAACTCAGGGAtatcacagCTGCAGCAGAGGGTCCATCAAATTCTCAACCTGAGAGGAGGCTCTGTCAAAGTAGTGCGACACACCATGAGAGAGTACGCTGAGAGCATCGGAGATGGGAAGAGCGAGGAGTTCAAAGAGGCTGAACGGAAGAGGATCATGGACCTTGTAGACAACTTCTAATTTCTTATTTTTGTcatgctctctctcacacacacacacacacacacactgacactcaaacacactcacactcaaacacaaacGGTATATTCACACACTTATGAACATTTACACCCCGCTGGTCTGATCTGGGACTGATGGTGACCTTGAGCCAGTCTGTGTAACATAATAAAGTCActgggtatgtttacatgcacacaattaCTACACTGCTTAAAGTAAGGTTTATTTTCATGCTTTAAAGAAaagtaatttataaaaaaaaactggtttaTCTTGTCTGCATCTTTGGCATCCAATgtggggaaaaagaaagaaaactgcTATTATCGGCAATACAAACTTtaataatttgtatttattttcaattaATTAACTCAGATTAATTTTATAAACACAATTTTTACATGCCAGAGAATTCGGTTAAAATTAAAGGTTTGCTGTGCATGTAAAGCTGCTCACTGTAGAACAGGAGTTAAGTTGGGAGAGCAGCAGATTGCAGCTGGACTGAAACGCACAGCAAACATGGGATgtgctgtttattttctgtgcTGTGGTGTTGCAGAGACACAGCAGAATAATTATGGACACACTTTGCACAGATCTGCAAACTTAATATCTATCCCTCGGCTCGCACACTTTACctgctttgtttgttttggatttAAATGTGGAAAATATTTTCTAATAAAATATTTGGTAATAAAATCCTGA

Function

GO: NA

KEGG:

id description
K12864 CTNNBL1; beta-catenin-like protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72791 lncRNA downstream 98856 30889018 ~ 30889218 (-) True G54470
TU72754 lncRNA downstream 202277 30785093 ~ 30785797 (-) True G54444
TU72718 lncRNA downstream 281313 30655670 ~ 30706761 (-) False G54414
TU72715 lncRNA downstream 281313 30704286 ~ 30706761 (-) True G54414
TU72708 lncRNA downstream 352724 30633932 ~ 30635350 (-) True G54407
TU72834 lncRNA upstream 7165 31064741 ~ 31064972 (-) True G54508
TU72835 lncRNA upstream 40404 31097980 ~ 31098185 (-) True G54509
TU72888 lncRNA upstream 177671 31235247 ~ 31235474 (-) True G54549
TU72910 lncRNA upstream 289705 31347281 ~ 31350577 (-) True G54567
TU72945 lncRNA upstream 433980 31491556 ~ 31527860 (-) True G54599
XM_039800564.1 mRNA downstream 6898 30928243 ~ 30981176 (-) True LOC120559110
XM_039800561.1 mRNA downstream 85166 30897279 ~ 30902908 (-) True zgpat
XM_039800562.1 mRNA downstream 86047 30896977 ~ 30902027 (-) False zgpat
XM_039801572.1 mRNA downstream 329182 30650112 ~ 30658892 (-) True tmco4
XM_039801565.1 mRNA downstream 357527 30612093 ~ 30630547 (-) False csde1
XM_039799270.1 mRNA upstream 56184 31113760 ~ 31125091 (-) True LOC120558334
XM_039801623.1 mRNA upstream 70652 31128228 ~ 31141874 (-) True e2f1
XM_039800310.1 mRNA upstream 104943 31162519 ~ 31191356 (-) False itchb
XM_039800311.1 mRNA upstream 104943 31162519 ~ 31190858 (-) True itchb
XM_039801985.1 mRNA upstream 408192 31465768 ~ 31469785 (-) False LOC120559902
TU72538 other downstream 915375 29971196 ~ 30072699 (-) False tafa5l
XR_005639345.1 other downstream 922133 30008242 ~ 30065941 (-) False tafa5l
XR_005639344.1 other downstream 922133 30008242 ~ 30065941 (-) True tafa5l
XR_005639347.1 other downstream 922134 30008242 ~ 30065940 (-) False tafa5l
XR_005639346.1 other downstream 922134 30008242 ~ 30065940 (-) False tafa5l
unassigned_transcript_235 other upstream 169484 31227060 ~ 31227131 (-) True trnaq-uug_1
TU73035 other upstream 1249346 32306922 ~ 32312778 (-) False LOC120558955
TU73036 other upstream 1259384 32316960 ~ 32321952 (-) False LOC120558955
TU73146 other upstream 1709781 32767357 ~ 32773486 (-) True G54756
TU73247 other upstream 1822617 32880193 ~ 32887290 (-) True G54834

Expression Profile