RNA id: XM_039801237.1


Basic Information

Item Value
RNA id XM_039801237.1
length 1916
RNA type mRNA
GC content 0.47
exon number 14
gene id csad
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 20706757 ~ 20712264 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCTCACTTTGCGCTGCAGCCATTTTTCCGCGGTCTGCCTTGTTAGTGCAACCAATTAAAGAGGGGTCCAGATTCACCGGCTTTTCAAAACCGTGGCTATGGCAAACATGTTACCATTCTCATCAGCAAACGGGCTGGAACCAGCTACAAACGGGCTGGAACCAGCTACAAATGGGAAGGAAGCAGCTAATCCCCATGACCTGAGTGAGCCTTTTGTTGACAACTCAGAGGGGCAACTCTTCTTGAATGAAGCCTTCAAGATTATTGTGGAGGAGGTGCTCCGCAAGGGCACGGATGTCAAGCATAAGGTTTGTGAGTGGAAAGAGCCGGAGCAGCTGGCTCTGCTGCTAGATCTGGAGCTGAGGGCGACAGGAGAGCCACAGCACAAGCTCCTACAGAGAGTAAAAGATGTCGCCAAGTACAGCATCAAGACAAGTCACCCACGTTTTTTTAATCAGCTGTTTGCAGGAGTTGACTATCATGCCCTGGCAGGCCGATTCCTCACTGAGGCTCTCAACACGAACCTCTACACCTATGAAGTGGCCCCAGTGTTTGTGCTGATGGAGCTCGAGGTTCTGAGAGGGCTGCGGCAGCTGGTTGGTTGGACCGAAGGGGATGGTCTTTTCTGTCCTGGAGGTTCCATCTCTAACATGTACGCCATGAACCTTGCACGCTACCAACTCTTCCCAGAGGTCAAAAGCCAGGGGCTGTGGGGTCTCCCACGACTTACCATCTTTACATCTCTAGAGAGCCATTACTCTGTGAAGAAAGGGGCTGCCTTTCTGGGCATTGGGACAGACAATATCATCTTGGTGAAAGTGGATGATGGAGGCCGCATGATTCCAGAGGACCTGGATGAAAAGATAAAGCTGGCAAAATCTCAGGGTGCTGTGCCTTTGCTTGTCAGCTGCACAGCAGGGACCACAGTGCAGGGTGCGTTTGACCCACTGGACCGCATAGCTGATGTCTGTGAGAAACACAAGCTCTGGATGCATGTAGACGCTGCCTGGGGAGGGAGTGTGCTCTTTTCCAAACAACACAGACATCTGATAAAAGGGGTTGACAGAGCAAATTCAGTAGCCTGGAATCCACACAAGATGCTGACGGCTGGCCTGCAGTGTTCTGCCTTGCTGCTACAGGATACCACGAACTTGTTGAAGAAGTGCCACAGTGCTAACGCCACATACCTCTTCCAGCAAGACAAATTCTATGATGTGAATCTGGATCTCGGGGATAAGTCAGTACAGTGCAGCCGCAAGGTTGACTGTGTGAAGTTATGGTTGATGTGGAAAGCTATTGGCTCCAGTGGCTTGGCCAGTCGTGTAGACAAGGCTTTTATCCATGCAAGGTATCTGGTGGAGCAGATGAAGAAAAGAGAAGGGTTTCATCTTTTGCATGAGCCGGAGTTTGTGAATGTATGCTTCTGGTTTATACCACCCAGTATAAGAGGGAAGGAAGGGAATAAAGATTACCAGGACAGACTGGCAAAAGTAGCTCCAGTCATCAAGGAACGCATGATAAAAGAAGGCACTATGATGGTGGGCTACCAACCTTTGGGAAACAAGGTCAACTTTTTCCGCATGGTTGTTTTCTCTCCACTGCTGTCCCAGAAAGATATGGACTTCTTTCTTGACGAAATTGAAAGACTAGGAAAGGACTTGtgaacacagaaaaacaatgtatagGATGTACATATTGTCTATCTAAAATTAATGGTTGTGTACAAAGCCTTCCATTATAACATCAGAAATGATAACAAACAACTTGACTGTACCAACTCAAAGATGTGATTTGTTTAGACAGCTGTGATTCTATAACCATGGAACAAAATctgaatgtatgaatgaataaataaacaaatagagGGTCTTTATTCTTTTGAAACATTTCCAATAAATTAAACAACTGTTGTGAAA

Function

GO:

id name namespace
GO:0042412 taurine biosynthetic process biological_process
GO:0007507 heart development biological_process
GO:0019752 carboxylic acid metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016831 carboxy-lyase activity molecular_function

KEGG:

id description
K18966 GADL1, CSAD; sulfinoalanine decarboxylase / aspartate 1-decarboxylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639130.1 lncRNA upstream 44204 20661297 ~ 20662553 (+) True LOC120558477
TU68645 lncRNA upstream 174188 20446243 ~ 20532569 (+) True LOC120559772
TU68592 lncRNA upstream 535638 20157789 ~ 20171119 (+) False G51317
TU68590 lncRNA upstream 541542 20161419 ~ 20165215 (+) True G51317
TU68552 lncRNA upstream 642414 20063992 ~ 20064343 (+) False LOC120558901
TU68681 lncRNA downstream 39331 20751595 ~ 20752345 (+) True G51386
XR_005639095.1 lncRNA downstream 60189 20772453 ~ 20779399 (+) True LOC120558354
TU68980 lncRNA downstream 508387 21220651 ~ 21222557 (+) True G51625
TU69050 lncRNA downstream 518006 21230270 ~ 21233529 (+) True G51685
TU69089 lncRNA downstream 565512 21277776 ~ 21288705 (+) True LOC120559383
XM_039801241.1 mRNA upstream 948 20700761 ~ 20705809 (+) False zgc:174906
XM_039801242.1 mRNA upstream 3195 20700761 ~ 20703562 (+) True zgc:174906
XM_039801243.1 mRNA upstream 3195 20700761 ~ 20703562 (+) False zgc:174906
XM_039801244.1 mRNA upstream 3195 20700761 ~ 20703562 (+) False zgc:174906
XM_039801245.1 mRNA upstream 3195 20700761 ~ 20703562 (+) False zgc:174906
XM_039800313.1 mRNA downstream 1118 20713382 ~ 20720457 (+) True znf740b
XM_039800314.1 mRNA downstream 1122 20713386 ~ 20720457 (+) False znf740b
XM_039800312.1 mRNA downstream 1233 20713497 ~ 20718220 (+) False znf740b
XM_039800289.1 mRNA downstream 33291 20745555 ~ 20750691 (+) False nfe2
XM_039800288.1 mRNA downstream 34924 20747188 ~ 20750691 (+) False nfe2
TU68644 other upstream 174295 20446243 ~ 20532462 (+) False LOC120559772
unassigned_transcript_229 other upstream 381516 20325169 ~ 20325241 (+) True trnaf-gaa_3
unassigned_transcript_228 other upstream 385175 20321511 ~ 20321582 (+) True trnah-gug_9
TU68517 other upstream 706319 19996511 ~ 20000438 (+) True zgc:194242
TU69094 other downstream 577324 21289588 ~ 21290962 (+) True G51716
TU69116 other downstream 649026 21361290 ~ 21363640 (+) False G51734
TU69117 other downstream 649026 21361290 ~ 21364430 (+) True G51734
TU69195 other downstream 846626 21558890 ~ 21559349 (+) True G51804
TU69309 other downstream 1071002 21783266 ~ 21788322 (+) False LOC120559721

Expression Profile