RNA id: XM_039801303.1


Basic Information

Item Value
RNA id XM_039801303.1
length 5514
RNA type mRNA
GC content 0.52
exon number 47
gene id kif1b
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 23928466 ~ 23993692 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTAGCGATTCTTCTTTTCGCATGTTGTGTGCAGATAGACGTCCGCCTTATATCTTTACTGGAGAACAAACTGGTCAAGGAGTCACCGGTTGCAATCGCAGGTCCCTCCGGCGGAGGATACCGCTATAATGGTTGTTTTTCACCTAGTTGGACTTTATTACAGTTTTGGTGCTCGCggattttgatttaaaaaaaaaccaacacatCTTGACGtccgctagctaacgttagttctCGCTACTGTCCTATGGTGTTGTCTTGGTGAGAGTCTTCAAACGACGGATATACAAGGAGTCTTACTGGGAGACAGTCGTAAGCCGCAAACATGTCTGGGGCATCTGTAAAAGTCGCCGTTCGAGTTCGGCCCTTCAACTCCAGGGAGATGGGCAAGGATTCAAAATGTATCATTCAGATGCAAGGCAACACTACAACTATTCTCAACCCCAAAGCCCCAAAGGAACCAGCAAAGACCTTCAGTTTTGATTACTCCTACTGGTCACATACTACGCCAGAAGACCCCAGCTTTGCATCACAGAACCTTGTGTACAATGATATTGGCAAGGAAATGCTTGCGCATGCATTTGAGGGCTACAACGTCTGCATCTTTGCTTACGGCCAGACAGGAGCTGGCAAATCCTACACCATGATGGGCAAGCAAGAGGAGGGGCAGGAAGGAATCATTCCCATGcTCTGTGAAGATCTATTTGAGAAAATCAATGAGGAGAGCAACAAAGAGGAGCTCGCCTACTCGGTAGAGGTCAGTTACATGGAGATCTACTGTGAGCGGGTGCGGGATTTGTTAAACCCTAAGAACAAAGGGAATTTACGAGTGCGAGAGCATCCGCTACTGGGTCCCTACGTGGAGGACCTGTCCAAGCTAGCTGTCACCTCCTACACAGACATCGCTGACCTTATGGATGCAGGCAACAAGGCCAGAACTGTGGCTGCCACCAACATGAATGAGACCAGCAGCAGGTCCCATGCTGTTTTTACCATCGTCTTCACACAGAAGAAACATGACAGCGAAACAGATCTCTCCACAGAAAAGGTCAGTAAAATTAGTCTGGTAGACTTGGCAGGGAGTGAACGAGCAGATTCCACTGGAGCTAAAGGTACCAGGCTAAAGGAGGGAGCAAACATCAACAAATCTCTCACCACGTTAGGAAAGGTTATCTCTGCCTTGGCTGAAGTGGATAACTGTACTATCAAGagcaagaagaagaagaagactgactTCATCCCGTACAGAGACTCTGTTTTGACATGGCTGCTGAGGGAGAACCTTGGTGGAAACTCAAGAACAGCCATGGTAGCTGCCCTCAGTCCTGCAGACATCAACTATGATGAAACTCTCAGCACGCTCCGCTATGCTGATCGAGCTAAGAACATCAAATGCAATGCTGTCATCAATGAGGATCCCAACAATAAGCTGGTGCGTGACCTGAAGGATGAAGTGGCTCGACTGAAGGAACTGCTCCATGCCCAGGGCCTGGGAGACATCCTAGACAACCTCAAAGACATTCAGAACAATAAGCATAGATACTTGATAGCCTCAGAGAATCAACGCCCTGGCCATTTCTCCACAGCCCCTATTGGTTCCTTGACAGCCTCACCATCCTCTGGATTACTGTGCAGCCAGGGGGGCCTTCAGTCAGTCACCAGCATTCAGGAGCGGATCATGTCCACCCCTGGGGGAGAGGAGGCTATCGAAAGACTCAAGGAATCAGAAAAGATCATTGCCGAGCTCAATGAAACCTGGGAAGAGAAACTGCGAAAGACGGAGGCAATCCGAATGGAGCGGGAGGCCTTGCTTGCAGAGATGGGTGTGGCAATCCGTGAAGATGGTGGCACTTTGGGGGTCTTCTCTCCTAAAAAGACTCCACACCTGGTTAACCTGAATGAGGATCCTCTCATGTCAGAGTGTCTGCTCTACTACATCAAAGACGGAATTACAAGGGTGGGTCAGGCTGATGCTGAAAGACGACAGGACATTGTTTTAAGTGGAGCTCACATCAAGGAAGAGCACTGCATATTCCGCAGCGAGAGGAATGCCAATGGAAATGTTATCGTCATGCTGGTGCCCTGCGAGGGATCGGAAACCTACGTCAACGGCAAGCGCGTTGAGGATTCAATCCAGCTTCGTTCGGGTAACCGTATCATTATGGGAAAGAACCACGTGTTCCGGTTCAACCACCCAGAACAGGCCCGAGCTGAAAGGGAGAAAACGCCAACTGCTGAAACCCCTGTGGAGCCGGTGGATTGGACCTTTGCTCAGAGAGAGCTTCTGGAGAAGCAGGGCATCGACATGAAGCAGGAGATGGAAAAAAGGCTCACTGAGATGGAAATCTTGTACAAAAAGGAGAAGGAAGAAGCAGACCAACTTCTGGAGCAACAGCGACTGGTGTACGAGAGCAAATTGCAGGAACTTCAGAAACAGGTGGAGACTATTTCTCTGGTAGCTGAGACACCTGATGAAGAAGagttggaggaggaggaggaagaggaagTGCCGTGGACTCAGCACGAGTTTGAGTTGGCTCAGTGGGCTTTCAGGAAGTGGAGGTACCATCAGTTTACCTCCCTCCGTGACCTGCTGTGGGGAAACGCCGTCTACCTGAAGGAAGCCAACGCCATTAGTGTGGAGCTTAAGAAGAAAGTCCAGTTCCAGTTTGTCTTGCTGACGGACACACTGTACTCTCCGCTTCCCCCTGAGCTACTGTCACCAGAGCCAGAGAAAGAGCGTGACTCCAGGCCTTTCCCCCACACCGTTGTGGCGGTAGAGGTTCAGGACCTGAAGAATGGAGCCACACACTACTGGTCCCTTGATAAACTCAAGCAGAGGCTGGACCAGATGAGAGAGATGTATGACCGTGCTGGAGAAATGGCCTCCACAAACCAGGAGGACGGAGAGGGCTCTATGACAGGAAATGACCCCTTCTATGACCGCTTCCATTGGTTTAAACTTGTGGGGAGAGCTTTCGTGTACCTGAGCAACCTGCTGTACCCTGTACCACTGGTGCACCGTGTTGCCATAGTAACAGAGAAGGGCGAGGTGCGTGGTTTCCTGCGTGTGGGGGTCCAGGCTATAGCTGctgaTGAGGAGGCCCCGGACTATGGGTCAGGAGTTAGACAGTCAGGAACCGCCAAGATTTCCTTTGATGATGAGTACTTCAAAAAGAATGACTTTCCTTCCATGGTTATGACCCGCTCCGGTTTGTCCCTGGAAGAGCTGCGCATTGTGGAGGGTCAGGGCCAGAGTTCAGAGGTCATCACACCCTCAGAGGAGCTTAACAGAATCAATGACATGGACCTCAAGCTGGGTAACATCGCAGACACCAAGCTGAGTTGTGGTGATGGTCTGGCAGGCCAGCTGGAGGTGGGCAGCATCTTTACCTTCCGTGTTACTGTGCTCCAGGCCAGTGGCATCCCGCCGGAGTACGCAGATATCTTCTGCCAATTCAATTTCCTGCATCGTCATGACGAAGCTTTTTCCACTGAGCCTCTGAAGAACGCCGGCAAAGGAGCTCCTCTGGGCTTTTACCACGTCCAGAACGTTTCCGTTGAGGTCACAGAGTCCTTCATTGAGTACATCAAGAGCAAGCCCATTGTGTTTGAGGTGTTCGGCCACTACCAGCAGCACCCGCTGCATTATCATGGCCAAGACCTGATCAGtcCTCCACTACCATCAAGGAAATACTACCCTATTCCCATGCCTCTGTCTAAACCAGTTCCAGCCACCAAGTTGAACACTATCACCAAGTCTAACCTGGGTCATTGCGTCAGCAAATACGACCTGCTGGTCTGGTTTGAGATCAGTGAGCTGGAGCCCACCGGAGAGTACATCCCAGCTGTAGTTGATCACAGCGGAGGTCTGCCCTGCAATGGCACCTACCTACTGCACCAGGGGATCCAGCGAAGGATCACGGTGACTCTCATCCATGAGAAGGGAAGCGAGCTCCACTGGAAGGACGTTCGTGAGCTGGTCGTGGGCCGCATCAGGAGCAAAGCTGAAGTGGACGATAGTGCTGCTGATGCTGTCCTGTCCCTCAACATCATTTCTGCCAAGAACATCAAGTCATCCCACAACTCCAACAGGACTTTCTACCGTTTCGAGGCAGTGTGGGACAGCTCCCTGCACAACTCCCTTCTGCTAAACCGAGTCACTCCATATGGAGAGAAGATCTGCATGACCCTGTCTGCATATCTGGAGCTGGACCATTGCATCCAGCCTGCTATTATTACCAAAGACATCTGCATGGTCTTCTACTCCAGAGACGCAAAGATCTCCCCTCCCCGTTCCCTCAGGAACCTCTTTGGGAGTGGATACTCCAAAACCCCCGACTGCAATCGAGTCACTGGCATCTACGAGCTGAGCTTGTGCAAGATGTCTGACACTGGAAGCCCAGGGAtgcagcgcaggaggaggaagatCCTGGACACTTCGGTGGCTTATGTGCGTGGAGAAGAGAACCTGGCCGGCTGGAGGCCCAGAGGAGACAGTCTCATCCTGGAGCACCAATGGGAGCTGGAGAAAATGGAGCAGCTGCATGAGGTGGAGAAGACCCGTCACCTGCTCCTGCTGAGGGAGAAGCTGGGAGACGATGCTCCAGTGGGAACGGCTCCTACCACCAAGTCCCTGAGCGAATTCCTGTCCCCCAGCATGAGCACCGGCAGCCTGTCCACCTCGACCTCCATCTCCTCGCAGATCTCCAGCACCACCTTTGAAAGCGCCATCACGCCCAGCGAGAGCAGCGGCTATGACTCCACCGACATTGAGAGCCTGGTGGATCGTGAGAAGGAGCTGGCTACTAGGTGCCTGCGCCTCCTGACACATACCTTCAACAGTGAATATAACCAAGTGGTTAACAGTATCAGTGACTGCAAGCTGTCTGACATCTCCCCAATGGGACGTGACCCATCAGTGACCAGCTTCAGCAGCGCTACCCTCACCCCCTCCTCCACTTGCCCTTCTCTGTCTGACTCCCGCTGTGGTTCAATAGACCAGAAGACCCCAGAGAACAGCTCCCGTGCCTCCAGTCCCTCTTGTTCAGACTATGAAAACTTCCCGATGGTTCCCACTCTGGAGACCTCCTACCTAGCACGGGCCGGAAAGAACGAGTTCCTCAACTTGGTGCCTGACATTGAAGAAATGAGGCCAGGATCCGTAGTATCCAAGAAAGGTTTCCTAAGCTTCATGGAGCCACGCTCCAACTCGTGGGTGAAGCACTTTGTGGTTGTGCGCCGGCCCTACGTCTTCATCTACAACAGCGACAAGGACCCGGTGGAGCGGGGTGTCCTCAACCTCTCCACAGCACAGGTGGAATACAGTGAAGACCAGCAGGCCATGCTCAAGACTCCCCACACGTTTGCTGTGTGCACAAAACATCGAGGAATCCTCCTGCAGGCCAACAACGAGAAAGACATGAACGACTGGCTGTACGCATTTAACCCCCTGCTAGCAGGAACGATAAGATCGAAGCTGGCGAGGAGGCGCAGTGGCCTAATGAAGAACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70245 lncRNA upstream 90523 23837692 ~ 23837962 (+) True G52611
TU70231 lncRNA upstream 114079 23814132 ~ 23814406 (+) False ctnnbip1
TU70233 lncRNA upstream 127617 23791479 ~ 23800868 (+) False ctnnbip1
TU70232 lncRNA upstream 137963 23789448 ~ 23790522 (+) True G52604
TU70181 lncRNA upstream 241124 23686438 ~ 23687361 (+) True G52569
TU70294 lncRNA downstream 19435 24009796 ~ 24011101 (+) True G52628
TU70296 lncRNA downstream 22602 24012963 ~ 24013301 (+) True G52629
TU70381 lncRNA downstream 70702 24061063 ~ 24073977 (+) False LOC120558580
XR_005639153.1 lncRNA downstream 70731 24061092 ~ 24074008 (+) True LOC120558580
TU70416 lncRNA downstream 279760 24270121 ~ 24274036 (+) True G52728
XM_039800725.1 mRNA upstream 1019 23906900 ~ 23927466 (+) True ube4b
XM_039800726.1 mRNA upstream 1019 23906902 ~ 23927466 (+) False ube4b
XM_039799310.1 mRNA upstream 22667 23903965 ~ 23905818 (+) True rbp7a
XM_039799305.1 mRNA upstream 28020 23894214 ~ 23900465 (+) True nmnat1
XM_039801310.1 mRNA downstream 4585 23994946 ~ 24001436 (+) True pgd
XM_039800998.1 mRNA downstream 23528 24013889 ~ 24020924 (+) True c5h1orf127
XM_039800999.1 mRNA downstream 23528 24013889 ~ 24020924 (+) False c5h1orf127
XM_039801000.1 mRNA downstream 23528 24013889 ~ 24020924 (+) False c5h1orf127
XM_039801001.1 mRNA downstream 23528 24013889 ~ 24019998 (+) False c5h1orf127
TU70197 other upstream 163332 23759234 ~ 23765153 (+) False tmem201
TU69870 other upstream 1081547 22842066 ~ 22846938 (+) False lamtor5
XR_005639388.1 other upstream 1365964 22562154 ~ 22562521 (+) True LOC120559933
TU69718 other upstream 1368157 22556329 ~ 22560328 (+) True G52210
TU69473 other upstream 1833595 22093905 ~ 22094890 (+) False LOC120558641
TU70648 other downstream 963081 24953442 ~ 24957330 (+) True G52871
TU70864 other downstream 1753249 25743610 ~ 25748317 (+) True tprg1l
TU70970 other downstream 2081224 26071585 ~ 26076664 (+) False G53096
TU71155 other downstream 2362099 26352460 ~ 26353463 (+) True G53232
XR_005639211.1 other downstream 2389315 26379676 ~ 26382295 (+) True LOC120559113