RNA id: XM_039801563.1


Basic Information

Item Value
RNA id XM_039801563.1
length 5229
RNA type mRNA
GC content 0.46
exon number 24
gene id csde1
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 30612093 ~ 30630548 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCACTCTATCCTTTAGGCTCTTTGGAAGTCCTAACGTTGTCAAATATCGCGGTAGTTGCCTCCCTAATCACTACGTAATGTGCCGTGCTGCTTCTAGCGGCGCTGGTGACAGTGCTGAAAGCTGTTGGGTATGAACTGAAACGGAACAGAATTTTTGTACCACCGCAACGTTACGAATTCAGGTCATAACAAAGAAACTGAAGATAAACCTCCCAAAACAAGCAAAGTTGCAACACTGAAGACACGTAGAAAACAACGGATCACTTCAACGGTCTAAAACACAAGAAGTAACCAAATCCTTAAATGACCAAAGAAGACTCCCATCAGCCCAATTGAAACACAGAAGAGAAGCAATCCTACGCCCAAGCATATTCtgagaagactaactgatctgaaACCAGAAGTCTGTGCCTACTCAACAGCTTTGACAAAGCACACGTCCCAACGCTGCTCCTAGCCCTCCTCATCCTCACCACACCACCGACTCACCACCGGGGTGTGGAGTGGGCTGCTATCTGCTAGTTTTATTCCCCCCCCTTCCAtagtttccccccccccacttctttccctttctctaCTCCTCCCACTGATTTcattgcaattttttttctaaGCAGTGTTATTGCACCTGCGTTTGCCTTTTTTGTGCTAGATTTCTCCCCCTTTTTTGCTTTATGCAACCATCTAGAACTTGTGCCAGAAACCtgtaacaagtgtgtgtgtgtgtgtgtgtgcgcgtgtgtgttgaACTGTGTGCGTGATAAGATCTGCAGGAACTGCATAGTCTTCGAGGTCCTGAGAATTACAAGATTCAAGACGACTAATAAAGACATCCAGCGGTCTATCATTGGGTGGTTACAAAAAATAGAACTTAACAGTCAAGCAAAACATTAACAAGTAATCAAGTTCAGCAAGTGCTCGAGCAAGTTTGGTCCGAGTTTATGGGAAAATATGGGCAGCCCCTGGAAAGGCTTTGTTGAGTTTACCTTGCCTGCGTCGCCACCCACTGCGTTTGTTAGCGCTGACCTGAGCAGCACCTCCCCTGTCGGACTCAGCCTGTCGCCATATGGCCGATCTCATATCAAAGTCCATTCCCCAGTGTCAGAAATGGAAAGAGGCTCCTCTGAACCTCCAGTGGCTCGCAACACTGGCTCTGCCCCATCTACCTCTACTGGTCCCATGCCCATCCCCCGCTCCTCCTCAGTCTCTTGCCATCCCCACCCAGGAAGTAAAAAACACAAGCGGACTCCCTTGTATCAGAGATCAATGAGTTTCGACCCAGGCATGCTCCATAACAATGGACATACTGCGTACGCCAACGGCACAGGGCCTGGCATTAGAGAGACTGGTGTGGTGGAGAAGCTTCTGACTTCCTACGGGTTCATCCAGTGCTCCGAACGTCAGGCTCGTCTCTTCTTCCACTGCTCCCAGTACAATGGCAACCTGCAGGAGCTTAAAATAGGAGATGATGTAGAGTTTGAGGTATCCTCTGACAGGCGCACTGGCAAGCCCATAGCAGTGAAGCTGCTAAAGATAAAGCCAGAGGTGCTGCCAGAGGAGCGCATCTCGGGCCAGGTTGTCTCTGCAATCCCAGTGCACTTGGATGGAAAGTCTGCACCCGGCCAGGTGCCCACTGGCAGTGTTTGTTATGAAAGAAATGGGGAAGTGTTTTACCTTACCTACACTCCTGATGATGTGGAGGGGAATATCCACCTGGACACAGGCGACAAAGTCAGCTTTTATATGGAAACCAACAAGCATACTGGTGCAGTCAGTGCTCGTAATATTCAACTTGTGAAGAAAAAGCAAATGAGGTGCCAGGGTGTGGTGTGTGCTACAAAGGAGGCCTTTGGATTCATTGAGAGGGCAGATGTGGTGAAGGAGATCTTCTTTCACTACAGCGAGTTCAAGGGTGATCTGGAGGCTCTGCAGGCTGGAGATGATGTTGAGTTCACCATCAAAGACCGGAATGGTAAAGAAGTAGCCACAGACGTAAGGCTGCTCCCCCAAGGAACAGTCATCTTTGAGGATATCAGCATCGAGCAGTTCGAAGGCACTGTTGTTAAGGTCATTCCCAAGGTTCCCACCAAAAACCAGAACGACCCTCTACCAGGCCGCATCAGTTCCCGGATTGGTTTCGCTGACAAGGAACTGCCATTTGGCGAGAAAGACACAAAGTCCAAGGTGACCCTTTTGGAGGGAGACCACATACAGTTCAACATCTCCACCGACCGCAGAGACAAGCTGGAGAGGGCTACCAACATCGACATCCTCCCAGACACCTTCGACTTCACCAAGGAGACCCGTGAAATGGGGGTGATTGCGGCTATACGCGATGGCTTTGGCTTCATTAAGTGTGTGGATCGGGATGCCAGGATGTTCTTTCACTTCAGTGAAGTCCTGGAGGAAAGCCAACTGCACATCTCAGATGAAGTGGAGTTCACTGTTGTGCCTGTAGGTCCTGTTTATAAGCTTTTCACAAAAGATATGCTATCAGCTCAGAGGAACCATGCAGTGCGCATCAAGAAGCTGCCAAAGGGCACAGTGTCCTTCCATACCCAGTCTGAGCAACGCTTTATGGGTGTGGTGGAAAAGGAAGTTGTGGCAACCACCACCAAGAATGCAAGTCCCACCAAGAACAAGGAAAAGAAAAAAGACAAGGCTAAAGTTGTAGAAAAGGAAGCTGAGGAAGGAGTGATTGCCTATGAAGACTGCGGAGTGAAGCTCACCGTGCCATACCATAACAAGGACCTAGAGGGGGGAGGATACCCACAGGTCGGAGACAAGGTGGAGTTCTCCATCAACGAAGTGAAGCGAACTGGCCAGCAGAGCGCCGTATCCATTAGGGTCCTCAACCGTAATGCCTCCAATGCCAAGAGACTGCTTGGATTTGTTGCCACACTGAAGGACAACTTTGGCTTCATTGAGACAGCAAATCATGACCAGGAGATTTTCTTTCACTATAGTGAAATGTGTGGAGACCTGGAGAACTTGGAGCTGGGCGACACAGTGGAGTACACTCTCTCTAAGGGAAAAGGAAACAAAGTCAGTGCTGAAAAGGTTACCAAAGTGGCTGCAGTGAATGGCATTAGTGAGGATGTTGGTGCGACGGCGATGATGGGGAAAGTTATCCGTCCCTTACGCAGTGTGGACCCTTCCCAGACTGAATACCAAGGGCTTATTGAAGTCACAGAGGAAGGTGCAACTAAAGGTCAGAATTATCCCTTTGGAATCATGGGTATGTCAAACAAGGCCGATTGTCTGCAGAAAGGAGAACTTGTTAAGTTCCAGGTTTGCACAGTAGCCCAAACTGGTCAGAAGATGGCCTGTAATGTGGTCCCTCAGCGTAGAGCCATGGTGGAGTGTGTCAAAGACCAGTTTGGCTTTATCACATATGAAGTGGGTGAGAGCAAGAAGCTGTTCTTCCATGTAAAAGAAGTGCAAGATGGCCTAGAGCTCCAGACCGGGGATGAGGTGGAGTTCTCGGTTGTCCTCAATCAACGCACAGGAAAATGTAGTGCCTGCAACGTACGCAGAGTCAGTGAGGGGCCTAAACAGGTGGCCACTCCGCGTCCAGATCGTCTGGTAAACCGATTAAAGAGCATCACTCTTGACGACTCCAGTGCTCCTCGCCTGGTGATTGTAAGACAGCCCCGTGGTCCTGACAATTCAAAGGGCTTTAATGTGGAGCGCAAGACTCGCCAGCCTGGTGTCATTGACTGAGCAATACAGAGCCCACCCTGTTGGTGTTGGTGGGATGCTGTCCCAAGGGGCAACAGGGGCTAAGGGAATTTGATTTGACACATGCTTGTACACACAAACTCATACATAAGACAtactcacacatacagtaatcGGCATGTGTAATCTTTATCCCCATCGATGCCTGCGAGGGAACTTTTCTCATTCCACAGTTCCCTGCCTCCCATGTATGATGTGCTTGATACAGAGTTCCACACTGCAGTGTACATGGGGTCTTtgagtgagtgtttgtgtgtgcacgcgtgtgtGTCACGTATCCTAGAAGTGATTTATAGTGTGTAACTGAGGTATTTGTTTCTGAGGGTCTTGTCCCTCTAAATCAGAGTGATGACTGTGTGGCTGTCTATGTCCTTTTTTGAATCTGCTTTGTTTGGAATTCTGCACCTGTAATCTGTCCAGTAGTTTGCCTGGGTGAATGAGTGTGACTGTTGGCATGTCTTTTGAGCATCtgctccccttttttttttttccttctcttatTTTTGCTCCTTTACCCATGGAAACTTAAAATGGTGTCACTGACAAGTTTCCACTACTGTATGCTTTCCTAAAAGATGCATAAAGCAAAGCAAACTTCCCTCCATAAGGAGGATCATATTTTTCATGTGCGGGCTTAAACTGAGGATTCTTCTCTGCTCGGTTTTTTGAGCAGTTTTTAAAACGCTTTATTGAAGAGTTGAAGTGAAAGCatggtgttttgttttgtgtgagtgtgtgtgtgagagagagagagtgtgtgattgATGTATGTTAATGTCAAGGTAGTTGATCTAATGGGATTTACTTTTACCAATCTGGAGCCTTTAGATACCTTTTTGGTATTCACATGCTCCACTAAAgcaattttttttccccaggtgCAGAGTTCCTTGTGGCATCTTATATCTACAGTTCTTttatactactttttttttttttttttttttttttcttgcacatatttttgcttttttccatTGAAACTCAATCTGCTAATATTGAATAAAGTAAGAATAAGGTGCCTAAAAACTACaagcaaaatgaaaaaaattagaTGCATCCTCTGTTCCCAGCCAAACCACCAAAACATTCAGAACAATCTTAGGGTGGCTTTCTTTTCTAGTAGAAATAATACTGATATGCATCCCAAACCTGTGGGttgaaatatactgtatgtaatgtgtgCTTTTTTTGCTTAGTGAAGGTTCATTGAAACTTCAGatataacaaaacaaatttAACTTAAAGAAGGAGAAGAGTATTAGAAATTCAGTTGAAAAAAGCATTATGAAATCAGGCTACCAGTTATTGTGCGCTGGAGACATGGTGGGTGAGCTGTTGTGCCTCTGCACATTAAGTTACAGTCTAAATTAATTTCAACTTTGGAGATCACCGGGTTTCAGTTGAACCACGGACAGAGGTTCTCATGTACTTTTGTTAATGGTCTTGaatgaaacaaatgaaataaagttTTATGAAAATCATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639359.1 lncRNA downstream 111762 30496040 ~ 30500331 (-) True LOC120559738
TU72537 lncRNA downstream 596776 30008037 ~ 30015317 (-) False tafa5l
TU72525 lncRNA downstream 709373 29900560 ~ 29902720 (-) True G54272
TU72424 lncRNA downstream 789276 29822520 ~ 29822817 (-) True G54189
TU72420 lncRNA downstream 796643 29814350 ~ 29815450 (-) True G54185
TU72708 lncRNA upstream 3384 30633932 ~ 30635350 (-) True G54407
TU72718 lncRNA upstream 25122 30655670 ~ 30706761 (-) False G54414
TU72715 lncRNA upstream 73738 30704286 ~ 30706761 (-) True G54414
TU72754 lncRNA upstream 154545 30785093 ~ 30785797 (-) True G54444
TU72791 lncRNA upstream 258470 30889018 ~ 30889218 (-) True G54470
XM_039801730.1 mRNA downstream 8940 30587509 ~ 30603153 (-) False ampd1
XM_039801728.1 mRNA downstream 8943 30587509 ~ 30603150 (-) True ampd1
XM_039801729.1 mRNA downstream 8969 30587509 ~ 30603124 (-) False ampd1
XM_039801727.1 mRNA downstream 26441 30563560 ~ 30585652 (-) False dennd2c
XM_039801572.1 mRNA upstream 19564 30650112 ~ 30658892 (-) True tmco4
XM_039800562.1 mRNA upstream 266429 30896977 ~ 30902027 (-) False zgpat
XM_039800561.1 mRNA upstream 266731 30897279 ~ 30902908 (-) True zgpat
XM_039800564.1 mRNA upstream 297695 30928243 ~ 30981176 (-) True LOC120559110
XM_039801205.1 mRNA upstream 357526 30988074 ~ 31057576 (-) True ctnnbl1
TU72538 other downstream 539394 29971196 ~ 30072699 (-) False tafa5l
XR_005639345.1 other downstream 546152 30008242 ~ 30065941 (-) False tafa5l
XR_005639344.1 other downstream 546152 30008242 ~ 30065941 (-) True tafa5l
XR_005639347.1 other downstream 546153 30008242 ~ 30065940 (-) False tafa5l
XR_005639346.1 other downstream 546153 30008242 ~ 30065940 (-) False tafa5l
unassigned_transcript_235 other upstream 596512 31227060 ~ 31227131 (-) True trnaq-uug_1
TU73035 other upstream 1676374 32306922 ~ 32312778 (-) False LOC120558955
TU73036 other upstream 1686412 32316960 ~ 32321952 (-) False LOC120558955
TU73146 other upstream 2136809 32767357 ~ 32773486 (-) True G54756
TU73247 other upstream 2249645 32880193 ~ 32887290 (-) True G54834