RNA id: XM_039801598.1


Basic Information

Item Value
RNA id XM_039801598.1
length 4528
RNA type mRNA
GC content 0.43
exon number 14
gene id cacnb3b
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 22184296 ~ 22199110 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGAAAAGCTCCTTTTCTTACATGTGGGCTGGCTCGAAGAAACCCACTGTACTGTACCAGTATACATGGGCATGTACACACCAGTGCTGCAGTCAGGGCATCAATTTTGTATAGGAAATGGCTGTTGAGGCAGCGCAGCAACGTCAGCTGTAAAGCACTTAGGCTGAGcgtgcctccctctctctccccactgTAACCACGGGCTGAGAGGAGGAGGGTTCCGCCTTTTCTGTGCAATGGGGGAGAAGAAAGCGCTTGCAGCAGAATCATGTCTGCCTCCGACTCTAGCGCTACAGGACTCATCTGTAACAAGGGTTCAGCCGATTCCTACACTAGTCGACCTTCGGATTCCGACCTGTCCCTGGAGGAGGACCAGGAGGCGTCTCGGCGTGAAGCCGAGCGCCAGGCTCAGCTGCAGCTAGAGAGAGCCAAGTCCAAACCAGTAGCATTTGCAGTGAAAACCAATGTGAGTTACTGTGGGGCTCTTGATGAAGATTGTCCAGTCCAAGGTGCTGCTATTAACTTCGAAACCAAAGACTTCCTGCACATAAAAGAGAAATACAACAATGATTGGTGGATTGGTCGACTAGTGAAAGAAGGGGCGGACATCACATTCATCCCGAGCCCAGTCAAACTGGAAGCCATGAGGATAAAACAAGAGCAGAAAGCAGCAGCAAGGAAAGGAGGGAACGCTTCATCTGGAGGCTGGAGGTCCACCCCGCCATCTGCAGCCAAACAGAAGCAGAAACAGACTGAGCATGTTCCTCCATATGATGTGGTCCCTTCTATGCGGCCAGTGGTGCTGGTGGGCCCTTCGCTGAAAGGCTATGAGGTAACAGACATGATGCAGAAAGCCTTGTTTGACTTCCTAAAGCACAGATTTGATGGCAGGATCTCTATTACACGGGTGACTGCTGATTTGTCACTGGCGAAGCGCTCAGTGCTGAACAAGAAGGCCATAATGGAGAGATCCAACACACGCTCCAGTCTGGctgaggtccagagtGAGATCGAGAGGATCTTTGAGCTGGCCAAGTCCCTCCAGCTGGTCGTCCTGGACGCAGACACCATCAATCACCCAGCACAGCTCCTTAAAACCTCTCTGGCTCCCATCGTCGTATACGTCAAAGTCTCCTCGCCTAAAGTCCTTCAGAGGCTGATTAAATCACGAGGGAAGTCACAAAGCAAACACCTCAATGTCCAAATGATGGCAGGAGACAAGCTAGCACAGTGTCCACCTGAGATGTTTGATGTCATCCTGGATGAGAATCAGCTGGAGGATGCATGTGAACATCTTGCAGAGTACCTGGACATTTACTGGCGTGCTACGCATCTCCCCTGTTCTGCCCCTGTTAACCCCTTACTGGACCAAAGCGTGGTCACCCCACCCTCAGCTGACTCCAGCCAGCAGTTTTCTGAGACTCAAGAGTTGATAGAATGATCACTACCACAGACATAGGACGCCTGTGCTGTCGGCTGGGGTCAGACTAGGAGGGCATAGAGCACAGGGACCAGGGCGCCACCAGGGGGCAGCAGCAGCCCTTATCTCTCCAAAGCCAGCCACCACCTTCTCTGGTCAGGTCCAGAGTCCCtcaggagagaaagagcagGAGGCTGGTGAGCTGGAGGATGAGGAGACACAAAACCAGGGAGAGGAGCATGAAGAGAAGGAGGATTCGAGAGAGGAGCCTCTCCACCTCACTGCTGCCCCCTCGGGAAGAGCTCCCTGCTCCCACCGCCACGTGACAACTCAGGGCCGCTTTCTACAGCTGCACGCCTACTGCTAACAAAAACCAGTACAGCAGTGCCGTCACTGCACGCCACCTCGCCACACCCTTCCTCCCACCCTGACCTTAATCCCAACTACCTGCTTTCACACTGGAAGTCACATCCCCCACCTGGCAACGCTGAGCCAGCCCATGTGTGATCAGACCCCCAGAAGTGGCTATCCCAGACACACATAGGCTAATTCAGCTCTCAATGTCGAGAAATTACACACCTCCGAAGGTAGAGTATGTTAGCATACAGAATTGTAGCATAGCAACGCTATCAGTATAACACAAAATCAAAACATGAGTAGCTTTCCATTGTCGGttcccagtgtttcctctctgATAAACCTGTCTTCCCCCTCTGGCCAAAGAGTGCAGATAGTGACAGAAAACCAAGTGTGTATGtcctccatctctacagctctcTGTGAGCTGGCATTCCACTTTAACTAAATGTTTCCTCAAAGGCACAATTGTTTCTAGCAGAGTCAACATCATCTCAACTGTGTTGGGACACCCAAGGAAAACTTTCCTCTTCctttatcacttattttctcTTCTTGTTTATCCAGTagcctttttttaattattctttatttccaattatttttttacagtatatatactacTATCTATAATTCATATATTGTCTCTCAGTATAGCTGATCACATAAGTAcgcaacagtgatgcaaaactAGCATGACAAGCACAGACTTGCACATCAACAGTCTATATGCATCTTTTGTCAcagctgtgaatgtataaatgcTGGTCCATTGTCTTAGGAAGGATTATTTACAATAATTGTGGTTTGTTTGCAGATGGTTGGTAGCAAATCCCATAACCTAACTAAAATGAAGAAAACTATTTATCCAAAAGAAATAAATGGTAAAATATTATTTCTGACAAAATTTGACAAACTCTGAGATATCATTTGTAGCATAACCAGATATCAGGAGATTCACTGATATTTCACATATGTGTAGGTTACTCCAAAAAGGACAGATGCATTGCTCCAGTGTCAGGCTTCATGACTCCTTTATTGGAGAAATCATACTCTTATAACCAGATGttgtaaattatgtttttaaaaatcgATAATTAACATTGTCTGTTTAtagtatttttatttctttgtttaaaaggagaaaaaaaaaagataaattgtGAGAGATTGAACACAACGTGACTTGGTATTTTCCAATGGactgtaaaacataaaaaaacaccttATTGAGTCGATGTACTGTATGATTTCCAAATACAGTAGATGTATTTATTAATAACACAGTTAAATGTTGCCTCAGCATGTGTGCTGAATGTAAGTTTTGGTGATATTAGCGCTAAAATAAACACAGCACCACAAATTACACAGTCAAGAACatactgcatttttttttatttgaccacATCACTTGTATCATTTACATCTCACACTTAGTGGTGTAGTGGTAACTGAAGAAGTGCTGGACTATATAGACATCAATGGAGCTTCAGAATTATTATCTCATAATCGTTTGGCATTAACAGCTAAAATAAGCATGTGTACAGCAGGCCTATAAGTATACAAAGGGCGACTTCTGGTGGTATGGTTATGTTATTCTTATATCCATATGGGAATATGTACAACTTCCAGTCATAACACTAGTTAAATGTCTTTTCTACAAATAACAAAAGCTTCATTCAAACGTTAACATAGCCACCAACTGTCACTTTTGTGTTTATCATCTATTGGCCTCCATTTCATATCTTACAGTATAAATGAATGCATCTCAATAATTCACTGAGGTTCTTTACATTAATGCATCTGCTTTTAACATATAAAACTATAGAATTCAGCTAACATACCactaatgtaaataatcaaatgTATGTGCATGACATATGTATTCCTGTTTCATCAGAAGGGCTTTTTAGGACCATCCTTACATGAGCCATTCATTCTTCATTGTAAATCAACATGAGCTGCATAACAAGTCACATGTATCAAGGCTTAATTGTACATGCTGTATattcaatattattattattatgaaattGCACAGAACAACAAATGCAGACAGGTAGAATGGTTTTAGTGACAGTACACAATTCTATACTCAACGCCTCTGAAAGCATGTGTTGATACgtattttcctctctttttagAATGATGCACAGTTATTTAGGACCACCGTAAAGTTTGCTTCCACTGACACCCACATTCATTTCTGAAGGACCAGGTTTGAGATATATAACTTCTACTTGATGAAACACAGAGAGCACATTACCTtcttttgattaaaaaaaaagatattagcTCCTTCTATTTGCTTAAATTGTATTGCAGGACATTTCTACGAAAGGTGAATTATTCTTTGGACTTCCAAAGCACAATTTTTTACAATTATCATTTCCTATTGCGTTTCACTTGCCTAAATTCTGTATGCAATACAAAGTCTAACATTGACGAGACACTAGCTGAGACTATCAAGGTACAGTATCTCCTCAGTTATGATGGGGTATAATTGCACTACTATCATTTATATGTCTGCTTTACAATGCAATAAATGCACTAAACGTTATGCTGTACCCACCTCCAATCCTGAACAAGTTATCTGGTCTGATGATGATGTCAACATTTCACTTGGTTTCTGACAAGTCGGCAAGATAAATTATATCCAACAGTGTCTGATGATGATGTGTACAGGGTGCATCTTTTGTCTATAGCACATTTGAAAGAGGGGGtgaataaaacacaacaacatttaaataca

Function

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0070588 calcium ion transmembrane transport biological_process
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0005245 voltage-gated calcium channel activity molecular_function

KEGG:

id description
K04863 CACNB2; voltage-dependent calcium channel beta-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639131.1 lncRNA upstream 7885 22173144 ~ 22176411 (+) True LOC120558498
TU69484 lncRNA upstream 46964 22111469 ~ 22137332 (+) False G52035
TU69483 lncRNA upstream 46964 22135335 ~ 22137332 (+) True G52035
TU69479 lncRNA upstream 77351 22105645 ~ 22106945 (+) True G52031
TU69472 lncRNA upstream 89406 22090197 ~ 22094890 (+) False LOC120558641
TU69522 lncRNA downstream 36046 22235156 ~ 22237182 (+) True G52060
TU69526 lncRNA downstream 55185 22254295 ~ 22254973 (+) True G52064
TU69510 lncRNA downstream 141273 22340383 ~ 22346646 (+) True G52054
TU69674 lncRNA downstream 275120 22474230 ~ 22476314 (+) True G52179
TU69681 lncRNA downstream 281433 22480543 ~ 22484101 (+) True G52185
XM_039799730.1 mRNA upstream 64687 22110987 ~ 22119609 (+) True zgc:158263
XM_039800163.1 mRNA upstream 124387 22046763 ~ 22059909 (+) True avpr2aa
XM_039800162.1 mRNA upstream 125278 22046763 ~ 22059018 (+) False avpr2aa
XM_039800925.1 mRNA upstream 156002 22022834 ~ 22028294 (+) True idh3g
XM_039801674.1 mRNA upstream 356406 21823518 ~ 21827890 (+) True ribc1
XM_039801754.1 mRNA downstream 3981 22203091 ~ 22213864 (+) True rnd1b
XM_039801775.1 mRNA downstream 41372 22240482 ~ 22244763 (+) False ptges3a
XM_039801776.1 mRNA downstream 41474 22240584 ~ 22244763 (+) True ptges3a
XM_039799313.1 mRNA downstream 47845 22246955 ~ 22248730 (+) True mipa
XM_039799530.1 mRNA downstream 189439 22388549 ~ 22397004 (+) True LOC120558509
TU69473 other upstream 89406 22093905 ~ 22094890 (+) False LOC120558641
TU69454 other upstream 123651 22056721 ~ 22060645 (+) False avpr2aa
TU69347 other upstream 280219 21903542 ~ 21904077 (+) True G51926
TU69309 other upstream 395974 21783266 ~ 21788322 (+) False LOC120559721
TU69195 other upstream 624947 21558890 ~ 21559349 (+) True G51804
TU69718 other downstream 357219 22556329 ~ 22560328 (+) True G52210
XR_005639388.1 other downstream 363044 22562154 ~ 22562521 (+) True LOC120559933
TU69870 other downstream 642956 22842066 ~ 22846938 (+) False lamtor5
TU70197 other downstream 1560124 23759234 ~ 23765153 (+) False tmem201
TU70648 other downstream 2754332 24953442 ~ 24957330 (+) True G52871

Expression Profile