RNA id: XM_039801612.1


Basic Information

Item Value
RNA id XM_039801612.1
length 1218
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC120559688
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 21553252 ~ 21555195 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gcacacatacacagcacacaaacCACTGAAGGAACATCCATTTCCATTCCAGAAGCtccagaaaatgcagaaatgtgTAACTAAACCTCTACAAAGTACACCCTAAATTATGAATTTCAGAAGTAACTGATTGTCATTGATATTTTACAGTAATCAGAGACCTATGGGCAGGAGGTCGTAAACAGACCTTGTGGTCAAAGGCTGGGCCTTACAAagtttattctgaaaatatgaTGGACCTGGCACCAGGAAAGGAGTTGGAGTCAGAGGTTGTGAATGCATACCTATGCATTGTGGGCCGTACAACGGGGGCAAGAATTATTGACGCctatacaatgactgaggtCTGGCAGGGCTCTCAAAAATGTTTCAGAAGGCTTGACCTTCTGAAACATGATGTGGCTGCTGGAGCCGTTTGCCACCAGGGACACTGGACGCTCATTATCATGTATCTCAAGGAGAAGAGGTGCTTGTACTTGGATCCATTTGGGGCCACGCAACAACAAATGGATCATTGCAGGGATGTGACAAGAGCCCTGGTCCGGAAACATAATCCGGCAATCGGGAAATGGACATGCTCCACTGTTGCCCATCCGAAACAGCAGGACACCACATCATGTGGAGTGCTTGTTTGCAAGCTTGCAGAGCTGATCTTAAAAGGTGAGGCTGTGCAGTACCCTGTGGACCAGGAGGGTGTTACACAGTTGAGACTGGACATGGCCATGTCCTTGTTGAATGACACAGATGACTTGTCCCAGTTATGTCGGGCTTGTGGGGAGGAGAGCTCAGGGGCTGACACAGATGACTGGATTGAGTGCACCACCTGCACTaaatggtaccacagtgtgtgtgttgggcatCCCTCCACAGAGGGAGATTATTTTTGTAAGGGCTgtatattttaactttttttttttttattttattttttttttccatcattgCAAGTAGGCTACAGACTGAGGAAATGTACATGTTCACAAAGATAAAAGATTAAAACAAAGATGTCAATCGGCAAAGGAGTAGGCCTAAACTTGTGGAATCTTTTAGATGAGGAAGTAAAAATGTTACGTTAcaaagaattaaaaagaaatactaaaGTAGGATGATTAACAAATATGAATGGCAGTGTGTATATGAATGCATTTGGTTTATTTTGCACGTGTGATGTATATCAATCCAGAAatgaataatacattttatttaaattgatGATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69145 lncRNA upstream 172003 21379001 ~ 21381249 (+) True G51761
TU69122 lncRNA upstream 176989 21376031 ~ 21376263 (+) True G51739
TU69121 lncRNA upstream 186222 21366676 ~ 21367030 (+) True G51738
TU69120 lncRNA upstream 186675 21366301 ~ 21366577 (+) True G51737
TU69119 lncRNA upstream 187197 21365621 ~ 21366055 (+) True G51736
TU69202 lncRNA downstream 22193 21577388 ~ 21578255 (+) True G51811
TU69283 lncRNA downstream 161969 21717164 ~ 21720123 (+) False birc5b
TU69314 lncRNA downstream 257417 21812612 ~ 21813631 (+) True G51900
TU69318 lncRNA downstream 264670 21819865 ~ 21820675 (+) True G51902
XR_005639358.1 lncRNA downstream 340146 21895341 ~ 21896456 (+) True LOC120559724
XM_039801608.1 mRNA upstream 48332 21498706 ~ 21504920 (+) True slc26a10
XM_039801028.1 mRNA upstream 79878 21417136 ~ 21473374 (+) False arhgef25a
XM_039801029.1 mRNA upstream 79878 21417136 ~ 21473374 (+) False arhgef25a
XM_039801031.1 mRNA upstream 79878 21437482 ~ 21473374 (+) True arhgef25a
XM_039799357.1 mRNA upstream 193265 21323314 ~ 21359987 (+) True kmt2d
XM_039801613.1 mRNA downstream 52144 21607339 ~ 21620201 (+) True c1galt1a
XM_039801687.1 mRNA downstream 161914 21717109 ~ 21720118 (+) True birc5b
XM_039801682.1 mRNA downstream 182285 21737480 ~ 21746717 (+) True zgc:153867
XM_039801681.1 mRNA downstream 182287 21737482 ~ 21746717 (+) False zgc:153867
XM_039801680.1 mRNA downstream 182297 21737492 ~ 21746717 (+) False zgc:153867
TU69117 other upstream 188822 21361290 ~ 21364430 (+) True G51734
TU69116 other upstream 189612 21361290 ~ 21363640 (+) False G51734
TU69094 other upstream 262290 21289588 ~ 21290962 (+) True G51716
TU68644 other upstream 1020790 20446243 ~ 20532462 (+) False LOC120559772
unassigned_transcript_229 other upstream 1228011 20325169 ~ 20325241 (+) True trnaf-gaa_3
TU69195 other downstream 3695 21558890 ~ 21559349 (+) True G51804
TU69309 other downstream 228071 21783266 ~ 21788322 (+) False LOC120559721
TU69347 other downstream 348347 21903542 ~ 21904077 (+) True G51926
TU69454 other downstream 501526 22056721 ~ 22060645 (+) False avpr2aa
TU69473 other downstream 538710 22093905 ~ 22094890 (+) False LOC120558641

Expression Profile