RNA id: XR_005639350.1


Basic Information

Item Value
RNA id XR_005639350.1
length 4359
RNA type transcript
GC content 0.49
exon number 15
gene id xpc
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 27644783 ~ 27660646 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cggaattttccagagagtggaagttctccccttattagacattctctggcTTGGTGCGGCCGGTGCGCgatattccccccccccccaactatggccacgccaagacccgtcCTTCAACAGCAtccacacactactattggccaggcgtccatgcttacatgtactgGTCCAATCCATTGAGGTCCAatcccctaaccttaaccactcgagggattcgtaattttgcggcCGGTGCAACATTAGCGGCGAAGAAGAAGGAGCGGACGTGACGTCAGAGCCTGCCACCAAAACAACCGGAGTGTTATGAAAGCTGCAGAGTGAAATGTTGGATAACTGCTGTTTCCAAACCCTTACACAACACCAGGTAGACAGCTGAGGGGCTTCCGCCTGTCTAGTTTTGCCAAAAGacatttaaatgtaaagaaaataGATTTGTATTTAGAAACGTTTGAGAAAAGACAACATGGCAAAGCGGGGAGGGTGTGCAGAGACAGAGGCCTATACAAAGAAACTGAAGCAGGTGCTGAAGGCAAAGAGCAGCGGAGCAAAAGCGAGAACGAAGAAGAAAGACGCAGCTAATGGccacacagaggaagaggagaagttCGAGAGGAAGGTCAAACCCAAACCACGGTGCTCCACAAAACGAGCATCAGGGAACAACTCATCCACCACATCCACAACTGCCACTGCCGACAAAACCAGTAAATACTTCCAGTCGCcggtgaaggaggaggagactgagagTGAAGATGACTTTGACATGGTGACCTCAGCGGCACCTGCGTTTACGGTGAACGCCAAGAgaacagagaaagaagaagaggaggacagTGAGGAAGACGAGGATGATTGGGAGGAAGTGGAAGAGCTTTCTGGGCCGCTGGGTCCAGTTGAACCACCAGAACCTGTCCTGCCCTCTCAGCCGCTTGAGATAGAGATCGAGACTCCAGAAATCAGGAAAAAGAAAAAGAGGCAGGCAGAGTTTGAAATGTATCTGAGGCGGATGATGAACCGATACAAGAAGGACGTGttgatagacacacacaagGTCCACCTGATGTGCCTGATAGCCAGTGGGATGTTCCGCAGCCGCCTGTGCAGTGAACCAGACCTGCTGGCCATCACTCTGTCGCTGCTGCCCCCCCACTTCAGCATGGTCGCCAAGCAACGTATCGACCAAAACTACCTCTCTGGACTGCTTAAATGGTTTAGAGCAACGTTCACCCTCAACCCCAGTCTTCCCTGTGAGGAGCGTCCGGACCCCCGGGCTCTCCTGGAGAGGCGGCTGGCCAGCTTGTCACCCAGAAACCACCAGGAGATGACTCATCTATTCCTGTTGGTCCTGAGGTCTCTGCAGCTCTTCTGCCGATTGGTTCTTTCTTTGCAGCCGATTCCTCTCAAACCCCCATCAGCCAAGGGCAAAGGGGCGAGAACATCTACCGGTGCCCCAGGAAAAAGCAACACAAGCCAGCAAACCTCCAAGACCACCTCCCCTGAGCCAAAGGTCTCTACTGGCACCAAGAGACCAGCTGGAGGGGGGAAAATAAATGGAGACGGAGGAGGAAAGAAAGCAAAGACAAAAGACATAAAAGAGGAGACTGCGAAGGAAAAGGAGAAGGTTATAACATCAGGAGGGCAAAGGCCAAAGAACTCAAAACGCCGCAGCATCGCCTCAAAAGTCAGCTACAAGGAAGAAAGTGACAGTGAAGcagaaaaagaggaggaggggcttagtgatgaggatgaggatttTCAGGCGACCAGTGAGGAAGACAGTGAGGATCCAGAGGGAGGGGCTAAATCCACCAAGGGGAAAAAGGGGAAGAGCAAAGCCAAAGTGAACAACAGCAAGAACACTGCAGCTCCGAAGAGAAGGAGTAGTGGAGGGAAAAAACAGGTAAAAGACGAGCAGGGCAAAGAGTGGGAGGAAGATGatgaagaaggaggagaaggaacGACAAGCAACAGAACAAAGCGAAGGAGTGGAAAAAAGGACGGGCCAGGAGCGGACGAGTGGTTGGAGGTGTATCTGGAGAAAACATCCTCCTGGGTTTGTGTAGATGTGGAACATGGTGTCGAGATGCCTCAACTCTGCTCCCAGAATGCAACAGCACCGGTGACGTACGTGGTGTCGGTGGACGGGGACGGCTTTGTGAAGGACCTGGGGAGGAAGTACGACCCCACCTGGTTGACATCGTCCAGGAAGAGACGGGTGGATGAAGATTGGTGGGAGGAAACGCTTGAGCCGTTTCTGGGACCTGAGGACGAGAGGGACAGAAAGGAGGACAAGGAGCTCCAGAACAAGCTGCTGAACAAACCCCTGCCGATCTCAATAGTGGAGTATAAGAACCACCCGCTGTACGCCTTAAAGAGACACCTCCTGAAATATGAAGCTATCTACCCTTCAACAGCCACTGTACTGGGATACTGCAGGGGAGAGTTGGTGTACTCCAGGGATTGTGTGCACACGCTCCACTCCAGAGACACTTGGCTCAAAGAGGCACGGACTGTCAGGCTAGGAGAGGAGCCATATAAGaTGGTGAAGGGTTTCTCTAATCGTTCCCGTAAAGCCAGGATGGCTACTGAGCAGAAGGATGCGAATGACCTGGCTCTGTTTGGAGAATGGCAGACTGAAGAGTACCAGCCGCCTATTGCTGTGGATGGGAAGGTTCCCCGTAACGACTACGGTAACGTCTACCTGTTTAAGCCCTGTATGTTACCGGTGGGCTGTGTTCACCTCAAGCTGCCCAACCTGCACCGCGTGGCAAGGAAGCTGAACATGGACGCAGCACCTGCAGTCACGGGCTTCGACTTCCATGGAGGATACTCTCACGCTGTgaCTGACGGTTACATTGTGTGTGAGGAGCATGAGGAGATTCTCAGAGCGGCCTGGGGGGAAGAACAACAGATTCAGaaacagaaggagaaagagaaaaaagaaaagagggtgATCTCCAACTGGACTTTGCTGGTTAAGGGGCTCCTGATCAGAGAAAGACTTAAACAGCGATACGGAAAGAAGAACCAGGCACTGGGGGGCCTTGCTCACGGAGAGGAGACCGGCGGGCTTTCGTCAGATGAGGAAGTGGTTGAGGGTGGAAGTCCATTAGCTGTGACAGCGTCTGAGACTCTGGCCATGTCCTGGCCCCAGAACAGACAAGCagaaaaggaaggagggagCATCAGTGGACTGAAGAAGAAGACAACAAAACGAGAAAAGAGAGGACAAGAGAAACATTTGTTCCCATTTGAGAAAGTGTGATGTCAAACATCCAAAACTGCACTCGACTTTAGTTAAATCAAGGTTGATTACACTCTGCTCTCAAAAGAGCTGGTCCTGGTATTTACTCTGGAAGATGTTCACAAAGCAAGATAAAATTTGCCCCAGGTGGGACAAATTtggaatacattttttacaaGTTTGGTCATCCCTGGAACATTTGGCTGTAACATAATAagcaggagaggaaagagaggaaaaataaGGAGAAAAATGTTGGGTAGTGCACTGCAGAACGATCCGTTTCTTCCAGTGGTGATAATACGTGCATTAAACCTGCTCTGTCTCCACCATCACTGTGCACACTCCCATTAGTTCATGTACTGTTAGGCTTTTATACGAGAGATTAGTAGAAATATAGCACATGCCAGGGGGGGGAAACACAGGTGAATATCAAATCCAGCAAGTTGACACGTGTGCTTTTGTGCAGAAAAGTGTTATCAGGTTGCctcggagaaaacaaacaacctGAAAGGAGGGACAGGAAAATGTCCTCACAACATGATACACTCAGCCCTCTTGCAAGTATTCAGTGGGTGTTCTCCAAAACTTGATGTGCTAGTTTGAGCCCGGTGGGCACGATTTCCCTTTCGGTTCAGCACACAAAATGGCATATACAGCTTATGCCGACTTGAATTGATGTCTTGGGTAGCAATTAAACACAATACCCCATGTACCAACAACACTACAAACAATGAAGGcaaattaacatattttttggaGTGGCTCCACTACCTTCTACTGTTTTCATTTCATCTCATTCCATATGAGCATGTTTCCCCAACCTTGCCACCACGTGACGACCAACTGGACCACAGCCATTGTTACTGGCTGGACCGTACACTATACTGCTACATCCCTGGAGGTTCACTTGTTCCTGCTGCATTCTCTATCAGCCCTCACATTCAGCCTCTTACTCACCTCTTTCACACTTTTGTCACTGTTTCACACCTTGTGTCTCTATACGTGTTTGTACACAGCAGATGATGGCTGTATTTAAAGTTGTAAACTGTTTTTGTATGAAAAGTATTTTTCCAAGAAATGTTGAAATATCAGTTAAAAGCAGACAACtcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71678 lncRNA downstream 188 27644176 ~ 27644595 (-) True G53619
TU71665 lncRNA downstream 49458 27559421 ~ 27595325 (-) True G53608
TU71575 lncRNA downstream 339217 27302502 ~ 27305566 (-) False LOC120558937
XR_005639209.1 lncRNA downstream 339223 27302392 ~ 27305560 (-) True LOC120558937
XR_005639208.1 lncRNA downstream 340250 27302392 ~ 27304533 (-) False LOC120558937
TU71680 lncRNA upstream 3392 27664038 ~ 27665112 (-) True G53621
TU71686 lncRNA upstream 39559 27700205 ~ 27700504 (-) True G53627
TU71730 lncRNA upstream 58671 27719317 ~ 27724212 (-) True G53665
TU71737 lncRNA upstream 68182 27728828 ~ 27754194 (-) True G53671
TU71739 lncRNA upstream 185165 27845811 ~ 27847273 (-) False LOC120558759
XM_039800046.1 mRNA downstream 788 27628180 ~ 27643995 (-) True arih2
XM_039800045.1 mRNA downstream 22613 27604238 ~ 27622170 (-) True impdh2
XM_039800992.1 mRNA downstream 58282 27576174 ~ 27586501 (-) True dalrd3
XM_039801898.1 mRNA downstream 109909 27417463 ~ 27534874 (-) True celsr3
XM_039801899.1 mRNA downstream 232980 27405416 ~ 27411803 (-) True wdr6
XM_039800523.1 mRNA upstream 63866 27724512 ~ 27733526 (-) False borcs6
XM_039800522.1 mRNA upstream 63866 27724512 ~ 27733503 (-) False borcs6
XM_039800524.1 mRNA upstream 63866 27724512 ~ 27733424 (-) True borcs6
XM_039801752.1 mRNA upstream 81193 27741839 ~ 27804126 (-) False sema3h
XM_039801751.1 mRNA upstream 81193 27741839 ~ 27804126 (-) True sema3h
XR_005639389.1 other downstream 445956 27198712 ~ 27198827 (-) True LOC120559934
TU71566 other downstream 454586 27189076 ~ 27190197 (-) False hyal3
TU71557 other downstream 473616 27163286 ~ 27171167 (-) False ifrd2
TU71558 other downstream 473616 27163286 ~ 27171167 (-) False ifrd2
TU71453 other downstream 678760 26961347 ~ 26966023 (-) True G53444
XR_005639094.1 other upstream 1815363 29476009 ~ 29492973 (-) False clcnk
TU72353 other upstream 2100428 29761074 ~ 29765873 (-) False cdk11b
TU72358 other upstream 2100428 29761074 ~ 29765193 (-) False cdk11b
TU72536 other upstream 2310550 29971196 ~ 30065918 (-) False tafa5l
TU72538 other upstream 2310550 29971196 ~ 30072699 (-) False tafa5l

Expression Profile