RNA id: XM_039801623.1


Basic Information

Item Value
RNA id XM_039801623.1
length 6158
RNA type mRNA
GC content 0.42
exon number 7
gene id e2f1
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 31128228 ~ 31141874 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGAGCCTTGTTTAGATGTAGATCAGCTGggacaataacaacaataatagccGATAACGGGGTCGGACGGGGTCGCAGGAGGCTTTTATAAATGGACCGCGCCCGGTGTGAGCAACTGACGGACCAGCAACTGCTGTTTTAAAGGATTCGCGTGATTTCATCGGTTTATTTCCTTATATTTCCAGTTTTGTCAGAGTGCTTCCTGCGTGCCCCAACAAAACGAGGGGGTTGAAGAATTGCGGCTAATAACTCAGCTAGCATGCTAATCTGTcctatatttttaaatttaacaatatcgCTTTATACTCCGCTGAACTAACTGTCGCTTTATTACACGTACTCTCAAAAATGCTTTTAAGTTATGGTAATGTATTTTGCATTGTGGATATTTTATTTCGATAGCTCACTCCTGGAAATGCTGCTATAAAGTTTTGATAGCCATTTAACTGAGCCCCGTCTTAGGTGTAAATAGAAATAATATTGTTTTATACACTTAAATAGCTAGTTTCTCGGCTGCACCGGGTTGTTTGTTAACTTGTGTCCGTCTTTGTTGTCAGGACATAAGCTAGCTCGTTAGCAGTGTTGGTAGTTGTGTTAAGGGCAGTGTAGCCAGGCCTCGCGGCTGTACTGTACTACCAGGAGAGATGAAAACAAAAgattagcttgctagctcgctAACCAACAGCGTTTATTTCTGCCACGGCCAATTTGCGACTCTTCTTTGATAATATATCAGCGGCTGAGCCTCAAGGCGCAGAGTTGGTATGCGTTTAGCAATATTGTTTTCTCTGCCAAATTAGCTTTTTGGCAGAAAAGCCTGTCTTGCTGTTTCTCCACCAGCCTAAAATAATGTTTCACCAGTTAGCTAACAATAAGTTATCATATATGTTTAAGTAATGTTGTTAGTCAGAATTCATTTGTAGTAGATTGTTTATAAGCAATAAGATGGACAATAGAGAAAGGGGaactttttaaagaaatgttcaAGCTGCCTATGAACACCTTCAGGCAAACTTTTAGAAGGTTTCATTATTGTTCCTTAAAttacagtacagaaaatcctagTGGGTGTTGATACATCTTAGTTTGCAACCCCTAAAGTCCAGTTGAAGGGGTGCTCAGTGACACACTGCAATGTCAGAGACTCTGATAACAGGGCAGACATCGGAGGATCTGTTGGCTGACTTTGAGACTTTGCTGAACTCTGGGACTATTGACCTGGGTGGGGACCATCAGATAGTGATCATCACCAGCCCCAGCAATGAGGGACTCCACCCGGCCGCGGCCCCCACCAGCACAGGGGAAATCCTGCTGTTTGCCACGCCACAGGGCCCTGTTGATGTGGGGGTCCAGGACAGGAGACGACCGGCTCTGGGAAGACCTCCGGTAAAGAGAAAGTTGGACCTGGATAGTGACCATCAGTATGTCAGCACTACTCGACCGTCCATAGGCCCAGCACCACCCTCCACACCTGCCCCTCCCAGAgtTCCTCGAACCACGACGGAGAAGTCACGCTATGACACTTCCTTGAACCTGACCACCAAGCGCTTCCTGGACCTGTTGTCCCAGTCGGCTGACGGTGTGGTGGATCTGAACTGGGCTTCGCAGGTCCTGGATGTCCAGAAGAGACGCATCTACGACATAACCAACGTCCTGGAGGGAATCCAGCTCATCTCCAAGAAGTCCAAGAACAACATCCAATGGCTTGGTAACCGAGTTGATGCGGCATTGGTTGCCCGCCATAAGGAGTTGCAGAGGGAGGTGTGTGACCTCACAGAGGCGGAGGAGCAGCTCGACGAGCTCATTTCCAAATGCAACCTACAGCTCAGACTGCTCACAGAGGACCCACAGAACAAGAAATTGGGCTACGTGCGCTGCCAGGACTTAAGAAATTCATTTGATTCCCCGGACCAGCTGGTCATGGTTATCCGAGCTCCACCAGAGACCCAGATGCAAGTTTCAGAACCCAGCCAGGGTTACCAGGTGTCGTTGAAGAGCACACGGGGTCCAATTGACGTCTTCCTCTGTCCAGAGGACAGCTCCGGCGTCTGCAGCCCCGTGACAGGAAGTAGTCCCTCTAAACCCAATGCTGACCCCTCCCTGGTGCCGCCTCCCACAAAACCCACAGACCAATCACAAGCCAGAACGTCCACAACAGCCCTGGAAGAGGGTTTATCATCACCAGCGTCCACGTCATCCACAGTGACAGCAACCTCCCAGCAGGACCCCTCATCACTGGTGTTAGGTGGGGACACAGAATCGCTCCTGGGAGGCGACCCCTTCTCCAACCTCGGAGACATGCCCGATTTTGACCTCTCACCCCTCTCCTCGGCGGACTTCCTGAGTGGAGATGGCCTTCCTCTCCCACTGGACGGTTTTATCAATCTGTCCCCCCCACACAGTCACGACTACCACTTTGGACTGGAGGACCATGAAGGCATCAGTGAATTGTTTGATTGTGACTTTGGTGACCTATCACATGTTTTGGGGGACAGTTAGATGAAGAAGACGAGGGGGAGACGAGAAGCATGTGTGGGCGTCTAGATTTCGGACTTTTCCTCTGTTCTCTGGGGCTTCTAAAAGAGGCCTTGAAATCAAAATGTtatgggcaaaaaaaaaaacaattttaattttttacttGTGCAGTTTGGGAAAAATGTTTTGTGTAGTAATTGCCTGTGATGCTCAAAATGCCACCCTAACTACAACATCTCAGTCCCCAAAATTGTACAGCACATTATTAGCACTTCTCTTTGGCCATTTAAGTTTTAGATCCAGACTTCAGCTTTAGTAtagctatttaaattatttatatgaatgttattttgatattttgtaCGAAGtgcgttttttttgttgctattgATAATGTTTTATCCAAGTGGATTGTgcaggtgtttgtgtgtagagtATGGACTCATGGGGCTGGTTTCCTTAACACTGATTACCTTCATGCTACTAATTCATAATGCTGGTTTTTAGACGCCTCAGTCTCCAAAGGGGAAAGGTTTGCATCCCACTGCTGTGCTGCGTCAATAAAACCGGCATTATGAGGAGTGCAGATTCAGTGCTGAGCTGTCAAAAAGCGTCTCGGAGCTGCAGCGCAGTTTCACACTTTCAGTAGTTTTCCCCACAATGACAGAGGTCATTATAAGCACAAAAGTAAAGGCTTCTCCATTAAtaatttgttttatctaaaacaCTGGAATCCTAACAGAATGGTTTCTCTAATGTCACTGTGTATGACAGTGACACTCAAGGTATCATTGCCCCCAACTTTTAATGACTAGATTTGTAGATTTGCACGTTTTACTGTCTCCGACAGTGGATTAACAAGGATTTGTAATAAATAACTAATTAGCAATTTTTAATTGCCCTCGAAACCCACTGACCAACAGATGGGCTGTCTTTACAAGGATGTAAATATTTATGTGGAAAATGAACACAAACAAGAACTTAGATGCTTTTGGGGAGCTTGACTCTCATCTTTCTTCAAATAAATGGTAGCGTAAAGGGTTACCATGACATTTAGAATTTTCATAACTGTTCTTCGAAAGACATTTCCAAAGGTAGAGACTCCACGGTGTGACCAATAATGTAGGTTTGAAGGAAAAAGAAGCAATTCCAACCTTAAAGGTCCAGATGTATTTTGTCGGTGTGCAGGAAACCAGGTGATGATAGTCTGCTACAGGTTTGCTAGTGATGAAAAACTAATACTGAATATGTTCTCTATTAGTTAGCTAGGCGTTTAGCCATAGTCTCAGGTGTTTGGAGCAGAGTAAAGTCTTAAATCAATGTTTTTGATGCAAACATGTATGAGAGTGGAAATGTTTTGGATGCATTTCGTGGGTCTTGTGTAGGTCGGTAATAGGTATTTACAGGTTTAGAAAATTCTGGAAGAAGGTGcatgctttttgtttttagccAAGGGTTCAAGTGAGAAAAGTTCACCAGATGCCCGTAGACTAATGCTCCCAAAACCACCCGACTGTTGTTGTCATGCGGAGAAGCTCCAAGCAGGTCCGAAGCCCAGACACACAGTTAAAGAAGTTCAATAGATCCTCACGGACCATACACTCTTCATTGCATGTTTTAAAAAgcattcagtgtgtgtgtgcgtgtgttttttttaaaagctgcatCTTTTCTTTTAGCAGTCTAAGTGGTGTAGAGCAGTGATGACTTTAGAAAAGGGTTAAGTGGAAGCGATGGACTTTTTGATAGGAATTCAAAACAGGGACATGCTGTTGTTCATAATTTGCACTTCAGATCAGTTGAGAAAGTTAATGTTCATGCCTTAAATCAATGACCTCTACCAGGTAAAGGGAGGTACCTGGGATATCTTATCTCAGCCCCAAAAGGATCAATTCCTTCTTGTTTTTCTACGATAGTCACATCAGGCTCCGTCTTCACGTACTACAAACGTACATGCCTTGGTCCTTTGGGAAGCACATTGATTTTCAGTTTAAATAAGCAGCAATAACAAAGACATTTTTACATCATGCACTCAGAGTATGAGATGAAAAACTGTCCTGCTACGTGTCATGTATTGTCTTAGTTAGCAATGTCTGcgtcaaatctttttttcttgttctaAGTTATGTAAGCTAAAGTATTGGGTtttaatgtgtctgtgtgtgtgtgggggtgcatgtgtgttgaaaatacaaattgttttgttgaatttcatatttatttaagaaaaaaaggggTCAATAGAAAAAATGGTACACTTGGTACATTCATTTTCTGGCAGTGACTTAACACCTATTCCATCACCAAAGAGgttgtgataataataataataataataagaggcAACGCTCACGTTACTGGAGTGTCACCTCTTACTATTATAACCTCTTTGCTTTAACTTGTTAAATCCAAGCAAATCATTCGTTGATAAATGTGTCCTTCAGTGGTGAAAAGAAGTGTTTTATTTGTAAATGAGCTTCTCGTCAGTAGCACATTTATATTtagagatttttttaaatttccctTATAGAGAATATATTTCCCCGTCTTACCTGTTGTGCTTCTGCAACCTTTGCGTTGGCTTAtgatgcaacaacaaaaaattcaggaatacatttatttgtcattttgacTGAACCGACTAATGTGTGTAATTCTTCATACCTTCTTTAGTCACGGCCTTCTCTCCCAAATCAGTTTAGATGATGGATATTTCCATGTTGCAAGCAACCTAGCTAATCGAAGGTTGTACACGTATCGTAGTGTAGCCTTCGGGTGCCTCAAACTGtcatgtgagtgtgtgaaaaCTTTATAACTACAGCCATCTTTTATTTCCTTTATCTTCAGGTCTGTGGAAACCATAACATAATGCATAATTTCAACAGCTTCTGAACATGTTTCAACTGACAGCGGTGGTACAAGCCACTAAAATTTTAGGCTCCTTTAGTCACCCTTAGAATGTATATGGCATTTTTTTcgtctttctctgtgtttaaCTTCCAAACTGAGCGACATTGTTGTTGAATGTCAGCAGTTCATGTTGTCAACCTGTCATATGTTGCATCGTGTTTCTGTTCTCTGCAGGACAAATGCAGTGCCTTGTTAAGGTAGAATCTTAATTGTTAATTAAATGTCAAATCAGGATTTTGTTTCGTGTGCAGCCGTGGTGAAAGAATGCAGTGTTTTCAGGTGTTTTGTGTGAAAACGTTTTAAGTGAAGATAAGCACCAGGGTTGAAATCAAATCACCTtcagttaatttttttattttatttttaaactcgTTATAAGAAAACTATATAAGATTGAGAATTGTAGGAATAAAAAAAGCACGAATGAATTCAGTTTTATACAAAGGTGACTTCATGTGTTGAAGTCACTGCGGGGTACAAAAAAGGTTTACAAGTGCAATCTGCTACATAATTGTGGTTTAACAGACCTAAAGTGAATTGACTTCAATCCTGATTCAGTCGCTATTCAAAGTGCTTTTAAGAGAAACCGTAGCTTATCCAGCAACTTAACAATCAATaaatttttttgtgtcttttctacaaaaaaaaattgtctctACATACTGGGTAAAACAAATACAGATTTGTACTTGTGAATTATTAATGAGCCCCAATATGCCCTTTTGTATCAAATTTTctttgacaaaaataaaaaaattaactatTTTGATTTGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K17454 E2F1; transcription factor E2F1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72835 lncRNA downstream 30043 31097980 ~ 31098185 (-) True G54509
TU72834 lncRNA downstream 63256 31064741 ~ 31064972 (-) True G54508
TU72791 lncRNA downstream 239010 30889018 ~ 30889218 (-) True G54470
TU72754 lncRNA downstream 342431 30785093 ~ 30785797 (-) True G54444
TU72715 lncRNA downstream 421467 30704286 ~ 30706761 (-) True G54414
TU72888 lncRNA upstream 93373 31235247 ~ 31235474 (-) True G54549
TU72910 lncRNA upstream 205407 31347281 ~ 31350577 (-) True G54567
TU72945 lncRNA upstream 349682 31491556 ~ 31527860 (-) True G54599
TU72947 lncRNA upstream 356903 31498777 ~ 31500889 (-) True G54600
TU72956 lncRNA upstream 481247 31623121 ~ 31623330 (-) True G54609
XM_039799270.1 mRNA downstream 3137 31113760 ~ 31125091 (-) True LOC120558334
XM_039801205.1 mRNA downstream 70652 30988074 ~ 31057576 (-) True ctnnbl1
XM_039800564.1 mRNA downstream 147052 30928243 ~ 30981176 (-) True LOC120559110
XM_039800561.1 mRNA downstream 225320 30897279 ~ 30902908 (-) True zgpat
XM_039800562.1 mRNA downstream 226201 30896977 ~ 30902027 (-) False zgpat
XM_039800310.1 mRNA upstream 20645 31162519 ~ 31191356 (-) False itchb
XM_039800311.1 mRNA upstream 20645 31162519 ~ 31190858 (-) True itchb
XM_039801985.1 mRNA upstream 323894 31465768 ~ 31469785 (-) False LOC120559902
XM_039801984.1 mRNA upstream 323894 31465768 ~ 31469785 (-) True LOC120559902
XM_039800341.1 mRNA upstream 1151068 32292942 ~ 32323275 (-) False LOC120558955
TU72538 other downstream 1055529 29971196 ~ 30072699 (-) False tafa5l
XR_005639345.1 other downstream 1062287 30008242 ~ 30065941 (-) False tafa5l
XR_005639344.1 other downstream 1062287 30008242 ~ 30065941 (-) True tafa5l
XR_005639347.1 other downstream 1062288 30008242 ~ 30065940 (-) False tafa5l
XR_005639346.1 other downstream 1062288 30008242 ~ 30065940 (-) False tafa5l
unassigned_transcript_235 other upstream 85186 31227060 ~ 31227131 (-) True trnaq-uug_1
TU73035 other upstream 1165048 32306922 ~ 32312778 (-) False LOC120558955
TU73036 other upstream 1175086 32316960 ~ 32321952 (-) False LOC120558955
TU73146 other upstream 1625483 32767357 ~ 32773486 (-) True G54756
TU73247 other upstream 1738319 32880193 ~ 32887290 (-) True G54834

Expression Profile