RNA id: XM_039801674.1


Basic Information

Item Value
RNA id XM_039801674.1
length 1794
RNA type mRNA
GC content 0.47
exon number 9
gene id ribc1
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 21823518 ~ 21827890 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTGTTTGGAGTTGCTCTCACGACCTCAGAATTGTGCCCATTTTATTCCACCACTGAAGTTTAACGTACAGCAGATGACCATGAGTTACCATGGTTACCAAGGGCATCTAAACACAACAGAATCTGACCGGCGAAACTCCGTCATTCACTGAGGGGCTGTATGCTGTCCCTAAATTGACTGAAATAATTTGGCCAAATCTGTATTGTCAGAGGCTCATTAGAAACTGAGAACATGTACAAAGTTGATTTGCCTGTAGAGCAGTCCTTAGAAAAGGCTGTGGAGAGGCGAAGGTCTGCAGAAACAGCACGCAAGGCCCGGATCTTCAACACCCGGCTCCGTGTGATGGGCCTTGATCTTGATGCTCTCAACCAACAGGTCCAGGAGAAAAAACATCAGCAAAACATGGAGATACAACGGGGCAACGCTTTTGACAAGCTGGGAGAATATCACGATAAAGCACTGCTGCAGCAAGACATTGATGAAAGAGAGAAGCGAGCGGCTTTGCACACTGACCTGACCAAGTATTGGGCCAGTCATCAGCGTGAAGAGGACTCACACGATGCTGATCTCAAGTGTGGCCTGAAGGGGGCATTCAGGATCACCATTCCAGAGGGTGAGCTGGGACCTGCCAGTATGAAAATCTTTCAGGGAGAGGGTATCGGAGAGGAGCAAAGGAGGAGAGAACAAatgaaaaagacagacagagatctGCGAGCACAGAAGGAAGACAATGAGAAAATGCACATGGGAGACAAGCACAGAGagaTGCTAGTGAGCAAAGAGCTGGTGCATCAGGACCTTAGGGGAGTTCAGCAAAATGCACTAGAGGGGGAGTGTAAGAAAGCTGTCCGCATCGCACTCGACAACTACAATCAAGCTCTGGCTGCAGAGCGGGCAGAGAAACTGAAGGAGCAGCACAGGCAAGAGGAAAGGGAGAACCTTGCAGAGATGCAGCACACTCGGACATCCGACATGATGACAGAGTGTGCAGAGGCAGCAAagagagaggtggaaggagGGAGGCCACCCCGGGTTCTGGTAGACAAGTGGAAGGGGATGAGCCCTGAGCAGCTGAGTGACATccacagggagagagaagagcagagTCTTGAGAAACAGAGACAACGTGATGCTGAAAAGATTCAGGATTCAGCTTGGGAACTACAGCTCCTGAAGCTGTCCAGAGAagcagaggagcaggagaggagagcagaagagctgaggagagagaagaggactCAGACAGATCTTTACAACATGCAGCTGGCCAGAGAGCAGCAGGCATATCAGGAGTACCTGAACAAGAAGCTATACACCAACAAACCCAGCAAGGAATACTTTTACCAATTCAACACCGGCTCCCGCTGAACCACTACCACACTTTGCTTGTCCTCCTGTGACAATGTGCTAATAAAATCTATTGATTGTTATACTCACACTCAATATGAATTGAATCACTGATTAATCAATACTTGTTGCTTATTTTTGAATTGACACACATGCATTGCTTTTATAAGCTTATACTAAGGACAAGAAAGGGACCTTTTTTGTTACAGATTGTtccacatattttatttttcagtcaTAAATCCAGTTACAGTGGTAGATTCATAATGCAGTTACAGTTATATTGGCCCCATATGTGGTACAAGTCCACTCAACCCCTGTCGTTCACCCATTATACATATAAATACCATCAGTCCCATTGTGCACCCCACACACAATAAAGAGGCACATATAGACCCGGCTGTGACACACACTCCCTacccctccttcctcccctATTTTCtctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69318 lncRNA upstream 2843 21819865 ~ 21820675 (+) True G51902
TU69314 lncRNA upstream 9887 21812612 ~ 21813631 (+) True G51900
TU69283 lncRNA upstream 103395 21717164 ~ 21720123 (+) False birc5b
TU69202 lncRNA upstream 245263 21577388 ~ 21578255 (+) True G51811
TU69145 lncRNA upstream 442269 21379001 ~ 21381249 (+) True G51761
XR_005639358.1 lncRNA downstream 67451 21895341 ~ 21896456 (+) True LOC120559724
TU69342 lncRNA downstream 71234 21899124 ~ 21900231 (+) True G51921
TU69343 lncRNA downstream 72554 21900444 ~ 21901003 (+) True G51922
TU69348 lncRNA downstream 77165 21905055 ~ 21906248 (+) True G51927
TU69358 lncRNA downstream 86435 21914325 ~ 21914837 (+) True G51935
XM_039801688.1 mRNA upstream 15604 21783217 ~ 21807914 (+) True LOC120559721
XM_039801685.1 mRNA upstream 42568 21776471 ~ 21780950 (+) True tmem9
XM_039801686.1 mRNA upstream 42568 21776471 ~ 21780950 (+) False tmem9
XM_039801680.1 mRNA upstream 76801 21737492 ~ 21746717 (+) False zgc:153867
XM_039800925.1 mRNA downstream 194944 22022834 ~ 22028294 (+) True idh3g
XM_039800163.1 mRNA downstream 218873 22046763 ~ 22059909 (+) True avpr2aa
XM_039800162.1 mRNA downstream 218873 22046763 ~ 22059018 (+) False avpr2aa
XM_039799730.1 mRNA downstream 283097 22110987 ~ 22119609 (+) True zgc:158263
XM_039801598.1 mRNA downstream 356406 22184296 ~ 22199110 (+) True cacnb3b
TU69309 other upstream 35196 21783266 ~ 21788322 (+) False LOC120559721
TU69195 other upstream 264169 21558890 ~ 21559349 (+) True G51804
TU69117 other upstream 459088 21361290 ~ 21364430 (+) True G51734
TU69116 other upstream 459878 21361290 ~ 21363640 (+) False G51734
TU69094 other upstream 532556 21289588 ~ 21290962 (+) True G51716
TU69347 other downstream 75652 21903542 ~ 21904077 (+) True G51926
TU69454 other downstream 228831 22056721 ~ 22060645 (+) False avpr2aa
TU69473 other downstream 266015 22093905 ~ 22094890 (+) False LOC120558641
TU69718 other downstream 728439 22556329 ~ 22560328 (+) True G52210
XR_005639388.1 other downstream 734264 22562154 ~ 22562521 (+) True LOC120559933

Expression Profile