RNA id: XM_039801727.1


Basic Information

Item Value
RNA id XM_039801727.1
length 4186
RNA type mRNA
GC content 0.48
exon number 19
gene id dennd2c
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 30563560 ~ 30585652 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTGACTTGACGCAACTGTCCTGAGAAGGAGGGCCAGGAGTTCTGCTTTACTTTTCTCTAGTCTATGCACACTTTCTTTGTTGTTATGTGTAGTTATTGTATAGCGAGCAAGTTTTAATTCCTCAATAGAATCCATTTTCTAACAATAAGTTACCAATTACTTACGCCTGGATTTATTCAGTCTGCTAACGTCAACCTCTCCTCGGTTTGAACGATGTGAGCGAGTGTAACGTTACTCggatttgatttgtttttcattttatcgaaagaaaatgaagaaagCACATACGTTGTGCTCATTATTTTAAACAACAAGGGGTTGTTTACAAAGAGCCAGGGGACAATTACACTCTGCTACAAGAAGACTCATAAAGACCTAAAGGATCAGTTACAACCATACATCTTTTGGCGCTCCTGCTTTAGCGTATAATTTCTGGATTAATTGACAACAGATTACAGGGCTttgcctgtctgtctttgtaaaaTCCCTGATGCATTCACTTGCCCCCTCTCAACATGCTGGCTCTGAGGCAGGAGCAGGGCAGGCGAGGGGGTGGTGAAGTTGATCACCTGCAGAAAGGGTCCACTGTGGCTTGGCAGGGCTGCCAGTCAGGAAGGTCCTCTTCTCACGAGAAGGGCATTAACATCAGGGAGAAGATCTCCCAGTGGGAAGATCGCAATCAGCAGGGCAGCAGCCAGAATGCCGGGGTGAAAGCACATCCTCCGACTGTATCCCAAACTCTATCTGGAGATGTTCTGGGCAACGAATGTTCTAACGAGGGATCGAGAGGTGGACTTCACGCAAAACCCAGCCTCTCCAAATCTAATAGTTTGGGTTTAGATTTTCGGGAATCCCTAGCACAAGCTGGACATGGTGTGGTTGGCAGGAAGTCAGAACCTCTGCAGAAATGTTCCACTGAATTTTTAACCACAACACCAGGAAATAAACCACTCGCAGCACAAATGTTTGCATCTCCCAGAGTGGAGGCTAACACGGCTGACTCTACAGGTAAACGAATCTTCACTGCTAACGGCGTTCAAAAAACGGATCGCATCGTGGATGTTGAAGTAGTTTCTAAACCTCTACCTCTATCAACTCATGACCAAGAAGTCAACATGCCTGCTGGAAACTTCTACACTTCACGGGGTTTCTGGCGTAAGCTTGAAGGGGACAGACTGCTCTGGGAGAAAGGCAGGGAGTCTTCAGGAGCTCAGCCTCCTCCCAAACCTCTGCGGACATTCCAGTATCGGGgagccaacaacaacaacacgggGCACACAGTGTGGCGGGACAGCAGATCCCCTCATAACCACTCCAACGTGAGGACTAACAGGGTAGCCCACCCACCTAGCTTCCCACCTCCTCCATGTCCTGTAGCAAAGACTAATGGGCTTTCAAGGCATAAAAAGAACAGGAAGTCCTTTGAGTACGAGGATGCGGCGCGTCTGACTACGAAGCGAGGCACGATGGGAGGCGAGGAAACGCAATCGGGCCTTTACCATGCCTACTCTGACGACAATATTTATGAGGACATCGTTTGTGAAGTGACCCGAGATGACCCCTATGAGGATGTCAAGCTATCTCCCATGTGTCTCCCTATTGCAAGGCCTCACGGcccaaagCTGCCTCCTAAACCTCAAACGTTGCAAGGCTATGCTGGCAAAGTGGAGAGGAGCAGGTTCCAAACATTAGCAGCTTCCAAATCACTTGCAGACACTCCAAAACCAGCTACACCCCAGCGTGCAAGCACTCAAAAAATACAGAGGACACCTCAGTACGTCAACAAGATTGAGACCATCTTTGACGACAagcgagggagaaagagagtaaGGAACCAGGGACTCTCAGTGCGAGAGGAGACCAGTGGGACAGAGAGTGACCCTGAGGACAACACCAAAGGCTCCAGGAGATCAGTTTACATCCAGTCTACACTGAAACGTCGGCCAGGCTACCGCACCCTGGAGAGAGACCTgatccagctgcagcagcagcagcttttcCAGATCTTTGTGGTGGTGTCACTGAGAAAAGGCCCCCCAGGAAACACCTACTCTCCTGAAATCACACAGCAGTTCCCCAAACTGTTTGAGAAGTCATCCCGGCTATCCAAAGAGGCTGAGGATCAGCTGAAAGTTATTCCCAAGTTCTGCTTCCCCGACTCGCAGGACTGGAAGCCCTCTTCACACATGCCAAGTGAGACCTTCTCCTTTGTCCTGACCGGAGAGGACGGCAGCCGCTGGTTTTGTTACTGCCGTAAGATCTTGCCCATTGGAAAGGGGAAGAGGCTTCCTGAGGTGCACTGCATGGTCAGCAAACTGGGCTGTTTCAACCTCTTTGCAAAGATtttggaggaggtggagaggcGCAGGGAGATTTCTCCAGCCCTGGTGTACCCTTTTATGCGTAGTGTGATGGAGGCCCCTTTTCCAGCCCCCGGACGCACAGTTACCATCAAGAGCTTCCTTCCAGGCTCTGGGAATGAGGTACTGACTTTGTGTCGACCAGTGGACTCCAGACTGGAGCACGTGGACTTTGACAGTCTGCTGCAGTGTCTCAGTGTTGGGAATCTCCTGCAGGTGTTTGCCTCCCTTCTGCTTGAGAGGAGGGTCATCTTCATCGCTGACAAACTCAGTGTGTTGTCTCGGTGTAGCCATGCAGTGCTGGCGCTGCTGTACCCCTTCACCTGGCAGCATACCTTTGTGCCTGTGCTGCCGGCCAGCATGTTGGACATCAGCTGCTCCCCCACCCCATTCCTCATTGGGGTGCTGGCCCCCTGCCTGCCAACGCTGCTGGAGCTGCCCATCGAGGAGGTGCTCATAGTGGATCTGTGTGCAGACAAGTTTGTCATTCAGCTGGGTGATGAAGACTGCATCCTGCCCAGTAAACTGCAGGCAGCACTGCAGCAGATCCTGGAGGAGAGGGACGATATcctgagagagaaagatagagacaGTTGTGGAGGTCAGCAGGCTAACCTGAGCTCTCTGCTGTCAGAGGGTTTTGTGCGGTTCTTTGTGGAGCTGGTGGGCCACTATCCTCTCCACATGGTCGAGTCCTCCAATGGAAGCAGGGAGCTTCAGCGCGACAGCTTCCGCAAATCACACCCCTCCCGCGGAGTCCGCCAGTTCCTGCAGCTCTTCATGGATACTCAGATGTTTGCCGGCTTCATTCAGGACAAAGAGCTGTGcaagggaggaggaagagGTCTCTTTGAGGTCAGAGTAGCCGAGTATCTGGATTCGTACCCTGAGCCAGAGCCGAGTGGTGTGAACAAATTTCTTAAAGGACTGGgaaacaAGATGAAACTCctacaaattaaatgaaaacagaCCAACACCCTGGTTTTTAAATGAAAGACTTTGTAATTACAAACAGACCACTTGTTGCTGCTGGACTTGCTGAGGAAATGAATGTGGATGAGAGTCTTGTGTTGAGATGTGAATGGGACGATGAAGAGTTTGGGTATGAGAGGGCCAGGTTCATCTTATAGCCATGTATGCATGTCTAAGAGCAGTGCACTTTTTATTGGACAAAAACTGGAAAGGCTATTTCTCTTTTAGCATTGTTTTATGAAACCTTGAAGACGAAGCACTGTGTCTTTGGAAAACTACAAAAAGCATTCCAGCTACTTAACCTCAGTTATCAACGTGAACATGTGTGGTTGTAACTATTTTCTCTTTGACTGGAAACGTGTGTACTTGCAAGACCTTTTCACACAGATTCAGCTCTACTACACAATGTGTGcattttacagtaaatgcaaCTTTAATCTTGTTAAGTAATGCAACTAAAAATAGCCTGTATGGTTCCAACCTGATGcatgttttttatacattttaatgtaaaatttTATTATGCATGTTGCATTTTCCTCAGCACAACTGTACACAAACCTTTTGTTTACTATTTCtacttgtttgcatttcagattGAGTAGATGTTTATTAACTCTGATCAGAACATTTTGAAGTTTTAAGACTCCAGGTTAAACCTCATCAATCGATATTTACATTTTGATAAAATTACGTCTTTTTCTGTCCTTGACTTTCCTTGTAACTGGagttgtaaatatttttttcattttgcacAATGTTTGAGAACCCGTGTACAGCATTTagaatatttttgtattaaagcATGATGTGTCCTACATTAAATAAATGGGTTCCCAAGGACAGCATTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639359.1 lncRNA downstream 63229 30496040 ~ 30500331 (-) True LOC120559738
TU72537 lncRNA downstream 548243 30008037 ~ 30015317 (-) False tafa5l
TU72525 lncRNA downstream 660840 29900560 ~ 29902720 (-) True G54272
TU72424 lncRNA downstream 740743 29822520 ~ 29822817 (-) True G54189
TU72420 lncRNA downstream 748110 29814350 ~ 29815450 (-) True G54185
XR_005639342.1 lncRNA upstream 33614 30619266 ~ 30619890 (-) True LOC120559660
TU72708 lncRNA upstream 48280 30633932 ~ 30635350 (-) True G54407
TU72718 lncRNA upstream 70018 30655670 ~ 30706761 (-) False G54414
TU72715 lncRNA upstream 118634 30704286 ~ 30706761 (-) True G54414
TU72754 lncRNA upstream 199441 30785093 ~ 30785797 (-) True G54444
XM_039801722.1 mRNA downstream 16478 30541501 ~ 30547082 (-) True LOC120559739
XM_039799787.1 mRNA downstream 363720 30103231 ~ 30199840 (-) True mtor
XM_039801583.1 mRNA downstream 497620 30008242 ~ 30065940 (-) False tafa5l
XM_039801582.1 mRNA downstream 497621 30008242 ~ 30065939 (-) False tafa5l
XM_039801700.1 mRNA downstream 603789 29947906 ~ 29959771 (-) True mapk13
XM_039801730.1 mRNA upstream 1857 30587509 ~ 30603153 (-) False ampd1
XM_039801728.1 mRNA upstream 1857 30587509 ~ 30603150 (-) True ampd1
XM_039801729.1 mRNA upstream 1857 30587509 ~ 30603124 (-) False ampd1
XM_039801568.1 mRNA upstream 26441 30612093 ~ 30630548 (-) False csde1
XM_039801566.1 mRNA upstream 26441 30612093 ~ 30630548 (-) False csde1
TU72538 other downstream 490861 29971196 ~ 30072699 (-) False tafa5l
XR_005639345.1 other downstream 497619 30008242 ~ 30065941 (-) False tafa5l
XR_005639344.1 other downstream 497619 30008242 ~ 30065941 (-) True tafa5l
XR_005639347.1 other downstream 497620 30008242 ~ 30065940 (-) False tafa5l
XR_005639346.1 other downstream 497620 30008242 ~ 30065940 (-) False tafa5l
unassigned_transcript_235 other upstream 641408 31227060 ~ 31227131 (-) True trnaq-uug_1
TU73035 other upstream 1721270 32306922 ~ 32312778 (-) False LOC120558955
TU73036 other upstream 1731308 32316960 ~ 32321952 (-) False LOC120558955
TU73146 other upstream 2181705 32767357 ~ 32773486 (-) True G54756
TU73247 other upstream 2294541 32880193 ~ 32887290 (-) True G54834

Expression Profile