RNA id: XM_039801775.1


Basic Information

Item Value
RNA id XM_039801775.1
length 1515
RNA type mRNA
GC content 0.40
exon number 8
gene id ptges3a
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 22240482 ~ 22244763 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAGACTCGTGGTGGAGCTCTTGAGCTGCTCTGGAACACTGAGCTCACTCGTTCTAGAATTGTCTCCGACGGCTCCATGCTTCGGTCTGTGAAACGgcagcCTGCAACAGCCAAGTGGTATGACAGACGAGACTCTGTTTTTGTAGATTTCTGCGTGGAGGACAGTAAAGAtgtaaaagtacattttgaCAAGTCCAAATTTGATTTCAGCTGCATCACTGGaacagataatatcaaacatCAGAATACTGTGGACCTTTTCGGGGAGATTGACCCCAAAGGCTCTAAATACAGGCGCACTGACAggtctgtgttgtgttgtttacgAAAAGCAGAGGCTGGGAAATCATGGCCACGACTTACCAAAGACAAGTCAAAGTGCAACTGGCTGAGTGTGGACTTCAATAATTGGAAAGACTGGGAGGATGACTCAGAAGAGGACTTGTCAAGTTTTGATAAATTCTCAGAGATGATGAACACAATGGGAGGGGATGATATACCTGATTTAGATGGTGCAGAAGAAGAGCATGATTCTGCAGACAATGACGATGAAAAAATGCCCGACCTTGAGTAGATGAACATGGGTGCCACCTCAGTAGTAAACAAGGCAAGTTAAAAGTCGGTTGAAGATAGAGAATAGACATGAgttggcagccatgttggagaAGAGACCTCATCACTCTACTCAGTTTCCAAAGCGAAACCCCTCAAGGGAGTGACTGTTGGATACAGACATGCACAGAGATCCATAGCGACATACAGTGCTGTGCTTTGCTGTTCTGTTCTGCATGGACAATTCTGTTGAAAGGAAAATGTTATTGTTCATTGACTTAAATGACTGTAATGGGATGTGTGCTGTCTtacaccttctctctctctctctctctttctgttttttgcGATGTCAGGTTATGTATTAAACATTGTGATTtctaatggggaaaaaaaactcaaaatgccTATTTTCCAAaaagtagaattttttttaatgacagatTTTCCCCTTTTAATGTTTGTATTGTAAAATGCACTTATTTTGTTCGTTAATTTAAAAAGCAGGCGTTGAGCTTGAAATGGTTTTTCCAATGTATGCCAACATCTGCACATATTTAACAATgatgatttcatttttaaacatttcagcatttaaaaTAAACTGATACGCTTGTGCAATTTACAGCTTTTGTTGAGATTATGGTAGAGTGGTACAATCTTTGCATATAATCATACCATTTGCAAAGTTGAGTTTTGTTTCTCTATGCCAGTGTACGAAACATTGTAGCAGGTACGATTAATTTTCTTCCATATGCATACTGAGGTGAAGGCAGACATACTATGTGGTCTAACAAGAGTTTCCAAATAGTTAAAATACAGGATTTAAATGTGCGTTAATCAGAAACACTATATGCTTTGGAGGCTTGTGTGTTTGATTCAACACGTGTTGAACACTTCCATTTGTCTTATGCTGTGGGAGTTTGGGTATGCATTTCTAATAAACTGTTTCAGACCATTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69522 lncRNA upstream 3300 22235156 ~ 22237182 (+) True G52060
XR_005639131.1 lncRNA upstream 64071 22173144 ~ 22176411 (+) True LOC120558498
TU69484 lncRNA upstream 103150 22111469 ~ 22137332 (+) False G52035
TU69483 lncRNA upstream 103150 22135335 ~ 22137332 (+) True G52035
TU69479 lncRNA upstream 133537 22105645 ~ 22106945 (+) True G52031
TU69526 lncRNA downstream 9532 22254295 ~ 22254973 (+) True G52064
TU69510 lncRNA downstream 95620 22340383 ~ 22346646 (+) True G52054
TU69674 lncRNA downstream 229467 22474230 ~ 22476314 (+) True G52179
TU69681 lncRNA downstream 235780 22480543 ~ 22484101 (+) True G52185
TU69756 lncRNA downstream 317400 22562163 ~ 22562516 (+) False LOC120559933
XM_039801754.1 mRNA upstream 26618 22203091 ~ 22213864 (+) True rnd1b
XM_039801598.1 mRNA upstream 41372 22184296 ~ 22199110 (+) True cacnb3b
XM_039801597.1 mRNA upstream 41372 22184564 ~ 22199110 (+) False cacnb3b
XM_039799730.1 mRNA upstream 120873 22110987 ~ 22119609 (+) True zgc:158263
XM_039800163.1 mRNA upstream 180573 22046763 ~ 22059909 (+) True avpr2aa
XM_039799313.1 mRNA downstream 2192 22246955 ~ 22248730 (+) True mipa
XM_039799530.1 mRNA downstream 143786 22388549 ~ 22397004 (+) True LOC120558509
XM_039799531.1 mRNA downstream 143786 22388549 ~ 22397004 (+) False LOC120558509
XM_039801210.1 mRNA downstream 256693 22501456 ~ 22515546 (+) True LOC120559492
XM_039801211.1 mRNA downstream 259462 22504225 ~ 22514950 (+) False LOC120559492
TU69473 other upstream 145592 22093905 ~ 22094890 (+) False LOC120558641
TU69454 other upstream 179837 22056721 ~ 22060645 (+) False avpr2aa
TU69347 other upstream 336405 21903542 ~ 21904077 (+) True G51926
TU69309 other upstream 452160 21783266 ~ 21788322 (+) False LOC120559721
TU69195 other upstream 681133 21558890 ~ 21559349 (+) True G51804
TU69718 other downstream 311566 22556329 ~ 22560328 (+) True G52210
XR_005639388.1 other downstream 317391 22562154 ~ 22562521 (+) True LOC120559933
TU69870 other downstream 597303 22842066 ~ 22846938 (+) False lamtor5
TU70197 other downstream 1514471 23759234 ~ 23765153 (+) False tmem201
TU70648 other downstream 2708679 24953442 ~ 24957330 (+) True G52871

Expression Profile