RNA id: XM_039801831.1


Basic Information

Item Value
RNA id XM_039801831.1
length 4291
RNA type mRNA
GC content 0.46
exon number 11
gene id slc16a4
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 22847985 ~ 22877262 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATGAAGGTTAGGTTAGTTGCGCCCTGGGATGGGGATGAGTGAGTGGGACCAGGTAGGCTAACCGTGGAGTGCCAGGTGTATGCTGGTTTTTATGCACCGGGGAGATTTCACTCCGTGTAAAGGTATCGGAGAAATTCCTTGCAGGACTGTTTGGTCAAAAAAACTGCTGTCCTGCGCACATGGTTGTACACTATCACATTGTGCGTCTCCTTTGATCAGGACCTGAGTAAAGTCTGCGGTGCGGTGGCTCTGATGTTTTGACCgcaatgctttttttctctccgaTGAGCTTCAGTGCTACGTCTGCGTCACGTGGCTCTCCTCAGTGAAGGCTTTGCTTTCTGCGGCTCCTCAGCAGAGCAGCGGTGTTGAGGCTGAGATGCGATATGCAACTCAGAGGGACTGGCTCATAGAGGCAAAGTTATGGCACGGTCATCCCCGGAGAACAAGGTCCCGCAGCAATTTCTCTCTGCCAAAAAGTCCCTCACCGGTATCAAGCACGTCTTCCTGCGACGCCGGAGCGAGAAAACCCTAAATTACGCGTCCAAATAAACTAATTGAAAATTGGGGCTGGAGCGCGTCAAGGAGTGAATGACATTTCAGTGTGGAGTTGAGTGACGGCCACAATGCAACAGGCCTGTGAAGTGAAGATAACAACTAGCTCACAGCTGCACACGGCGTAAAGCTAATCTGGATGCAGCCATAGTTACAAGTGCCCTTCGACCACCTGAGAATGACACTCAGACAATAGGACTCTTGAGTTTATTCTTAACTCCAGAGCCATCAGGCATTCTACCAAATCAGCATAAACAGTGAAACCAAGTCCGCCATGAACCTGTTCAGGAAGGATGCCATGACCACTaagaaggagaaggaaaaaGAGATCCAGTATGAGGACCCTCCAGATGGAGGTTGGGGCTGGATGGTGGTGTTGCATTGCTTTCTGGTAAACGTCCTAGTGATGGGAACACTGAAGAGTTTTGGGATCttctttgtggcattccaaGATGAGTTTGGAGGCTCGTCAGAGAGCATCAGCTGGATCGGTTCCATCATGTCGAGTCTGCGTCTGTCTGGAGCGCCCCTTGCCTCTGTGGCCTGTGCCAAGCTTGGAACCAGAGTGACCTCCATCGCCGGGGCAGTGCTGGTTAGTGGAGGATTCATCATTAGTATTTTCGCAAACAGCGTGGTGTTCCTCTACATCAGCATGGGAGTGATAGTTGGAATTGGTTTTGCACTACTTTACCAAGCCTTCTCAGTGGTCACAGCGCTGTACTTCCGAAGGAGGTTAGCGACAGCGTATGCGATTGGGCGTTCTGGCATGGGTTTGACCTTTGCCCTTGCTCCGTTTACTCAGCTGCTCCTGGACAAGTATGCTTGGCAAGGAGCAATGCTAATTCTTGGCGGTCTAATGCTGAATCTGGTGGCCACTGGGATGCTTCTGCGACCCATCAACGTGAAGTCTCCTGTGTCAAACCCTACCTCTCCTCCCATTCAAAAGAGCCCTGCTGTTTCCCTCAAGAGCTCCTCAGAGAAGGAATGCACTAAGAGCTGCTTGAATGGCTCCTCTCACTTATCCAATGGCATCTCCAAAGCAGACTCATTTCCATCCCCTCCTCCTGCCCCTCATGGGGATACTGAGAACCTGGGGGGCCAGTTTGCTCAGGGACTCCAGGACCAGTCAGTGAACCCTGAATTGACCAGGCTGGTCCTTAATGGTGTGAATGGCCATGAGCCCCACCATGACTTGGGTCAGTGTAAACCCACAACTCCAGATAGCTCAGCGGAGCTCAATGGCAGCATGAATGGGTCCACCATTGTTGGATTTCCCTCACATGCCAGCACGCCGAGTGAGGTGACCGTCATAAAAGCCAAAGTACTGGATTTCTCTCTGCTAAAGGACCCATTCTTTTGTATCTATACTTGGTCCTTAGTCTTCAGCCAGTTGGCCTACTTCATCCCCTATTTCCATCTGTCTGCCCGAGCCCGAACCCTGGGCATCAATGCCATGGACGCTTCCTTCATCATCTCTGTGGCAGGTATCACAGAGACCATCGCCCAGCTGGCCTCAGGCTGGGTGACAGACAGGAACCTGTTCCATAAATACCACTACCACAAGGCATACCTGATACTCTGTGGCCTGGTCAACCTGCTCTCCCCGATGGCAACCTCCTACATCCTGCTGATGGTTTACGCTGTCTTCTTTGCCATCTTCTGTGGTGGATACATGGctctgctgctgccagttctaGTAGATCTCGTGGGGTCGGAGAAACTTAACAACTCCATGGGCTTCTCCATGTTCTTTGTTGGCCTGGGTTGCCTCACAGGACCTCCTTTGGCTGGCTTCCTGTACGACTACACTCAGACTTACGACTGTTCTTTCTACCTGGCTGGCCTCTGCTATCTgctctcatctctctccttgTTCATGGAGCCGCTGGCTCAGCGCTGGAAGGCCAGGAACAAACTGACCTGCACCAAGAGAGCGGAAAGCAGCTGTAAGACCAACGGCTGCTTTGCCCCCGACCACCTGTAGAACGGCGCTGTGTAGGAATGAAACCCAGGGAAGGCCTTCGATCTTGAACCAGCATGCTCATAAAGTGCCATGGGCCCGCATACCTTGGACTCTTAAAGTCGGGACCCAAGTGACCCTTAATTTCAGCAGGAGCGTAACACGGTGCCGAGGAGACCACAGTAACATGTCTAAGAACATGCCATAGTCCGGACGTTGGTGAATAGATGTTTATGATGAACTTTTAAAGAGCCAAAATTTGGGTGTCCTGCAAAATATTTTACTCCCTATTCTTGTTCTTATCAGAGGTACATGCAACCAAACTGAAGTAATCCTCTACATACATTATCCAgcacattatatattataaaacacAATCTAAATCTGTTTTTCAATGCAACAACAAAACTGCATTAACTTTGCAGTGAATTTCAGTTGCACATAATATGGCTGGAAACGAAGCTATGCAGTTAGCTTGATATCCTGTTATCTGAAATCCTCCTCCTATTGTTTCTGTGATGGCATTCATGGAAGAGCATATCCATGAAGAAATCTCACTCGATTTCTTTGGAAGAATTTACCTGTATCTGTAAACCTGTACTCACTGGTATGCACTTTGGGCCAAATTGTAATTAAGCTAAATGACATCTGACCTTTTAACTGCCAGGTAATTAAGAAAGTGAGCAACCACTTAATTGCAGCCTGCTTGTATGACACAAATGTGTAACCTGCTcttaaaagccaaaaagcagCAACTGCTTCAGTAGTTTAATCTCTTGCCCCAGAACTATTATTGTAGGCACAGGGGTTGATTAAATGGCATGCTTTACCATTTAGAGGTATAATCATATTCTCGTATTTATATCTTTGTTATTAATAatctggatgttttttttgttttttttttgtctgtcaaCTACTTTAGCATACTTAGACTTAGAGTATGCTGTGTCTCAATTCAGATACTTTTGTGAGTACACTTACATGTAGTGCAATGTGTACACTATGCACTCACTTGTGTAGTGTGTAAATTTTTGGAACTGGAAATGACTATTCTTCTTTTTAATGGTAAATTGCATCCGGGCAGAGCATTACCGCAACCTATTGTCGCCCACAAAAATATACATtggcttgttttttttcactatcTGACAAAAAACACATGTATAAATTCCATTTGTATAGTTTGGTTTTCGCCATTTCAATCGCCACCGCTATGGTGTCCGTTGAGAGCGAGTAGTGTCCTGTGTTCCACGCTCATCGTTTTGACCATTTTGAGTGCAGCATCCAGGTACTTGTAGTGCACTGCATTTGGCCATACTTCAGTCTGTGTGAACGCACTATTTACTCAAAATAGCAAGTGTAAGTACAGAAGAGCACAATTTGAGACACAGCATTACACAAAGATACACCATTCAAACTTCAAAATATTCGGCTAATTTAGGACACTAAATGCTGCTtctgttcagattttttttttttatatctttcaaCTTTCTCTCATAGAAAGTTCAATgtttgaacattttcttttcctctttaacCCCTTGAtactctttatttttttcatctacTACTATTAGTACTTAATGACATTAGTTCCATTTTTCATACCTCTCATAGTTTTTCTGGAATTgcagttgttttttaaaaaactttttttccttcCATTATAATTGGTATGTAttgtcaacacattctcactcccatcgcgtaaaatacggatgcttggctaggggacggttgggtttagaaaagaagaacaggacggttgg

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69871 lncRNA upstream 691 22834798 ~ 22847296 (+) True G52333
TU69822 lncRNA upstream 85433 22750063 ~ 22762554 (+) True G52294
TU69815 lncRNA upstream 118432 22726597 ~ 22729555 (+) True G52288
TU69880 lncRNA downstream 6787 22884049 ~ 22888687 (+) True G52342
TU69915 lncRNA downstream 113990 22991252 ~ 23068476 (+) False atxn7l2b
TU69923 lncRNA downstream 131915 23009177 ~ 23020008 (+) True G52379
TU69903 lncRNA downstream 143544 23020806 ~ 23023328 (+) True G52364
TU69904 lncRNA downstream 143544 23020806 ~ 23023328 (+) False G52364
XM_039801980.1 mRNA upstream 1071 22842044 ~ 22846916 (+) True lamtor5
XM_039801273.1 mRNA upstream 19439 22826631 ~ 22828548 (+) True LOC120559530
XM_039801272.1 mRNA upstream 19439 22826631 ~ 22828548 (+) False LOC120559530
XM_039800600.1 mRNA upstream 24344 22812178 ~ 22823643 (+) True LOC120559125
XM_039801414.1 mRNA downstream 42512 22919774 ~ 22942875 (+) True slc6a17
XM_039799925.1 mRNA downstream 154034 23031296 ~ 23033104 (+) True ngrn
XM_039800300.1 mRNA downstream 179787 23057049 ~ 23061335 (+) True sypl2b
XM_039800301.1 mRNA downstream 179787 23057049 ~ 23061335 (+) False sypl2b
XM_039800302.1 mRNA downstream 184975 23062237 ~ 23068479 (+) True atxn7l2b
TU69870 other upstream 1049 22842066 ~ 22846938 (+) False lamtor5
XR_005639388.1 other upstream 285466 22562154 ~ 22562521 (+) True LOC120559933
TU69718 other upstream 287659 22556329 ~ 22560328 (+) True G52210
TU69473 other upstream 753097 22093905 ~ 22094890 (+) False LOC120558641
TU69454 other upstream 787342 22056721 ~ 22060645 (+) False avpr2aa
TU70197 other downstream 881972 23759234 ~ 23765153 (+) False tmem201
TU70648 other downstream 2076180 24953442 ~ 24957330 (+) True G52871
TU70864 other downstream 2866348 25743610 ~ 25748317 (+) True tprg1l
TU70970 other downstream 3194323 26071585 ~ 26076664 (+) False G53096
TU71155 other downstream 3475198 26352460 ~ 26353463 (+) True G53232

Expression Profile