RNA id: XM_039801836.1


Basic Information

Item Value
RNA id XM_039801836.1
length 931
RNA type mRNA
GC content 0.54
exon number 5
gene id LOC120559811
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 33955326 ~ 33963940 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atgacaagtcaaaaaatgtctgctgtgaaaaagccccACGCTCATCTTAAAGTAGGTCACTGTTTTTTATCACTCTTAAATATACTTCTGACGCATTTGACTATGCTCCGTCTGACTGCAGGGCGCGTGGGAAGTCTGGTTGCCAGACGTGCAACCGTGGCCTTGACTACCAACAGCGCGAGGATGGCGAGTCACGAGGTGGCACAGGCAGTGGACATGTCTCAGCCAATGTACGTGGACCGCCTGGACACCCCTCTGCCCGACAAACCCTACACCGACGTCCTGACTGCTGCCGACAAGAGCCTGAAACAGAAGGAGAAAGGACCCTGGAGCCAGCTGAGCCAAGAGGAGAAGCTCGCCTTGTACCGGCTCGCGTTCCATCAGACCTACCCGGAGATGAAGCGGCCGTCAGCAGAGTGGAAGACTGTCTTGGGCGGTATGTTCATCTTCTTGGGCTTCACTGGCCTGCTGGTCTGGTGGCAGGCATCCTACGTCTACCCTCCACGTCCCAGGACCTTTGACGAGGAGTGGCAGGCCAAACAGCTACAGAGGATGTTGGACATGAAGGTCAACCCCATCGAGGGCTTCTCAGCCAAGTGGGACTATGAGAAGGGCCAGTGGAAGTAAAGGGACCACTGGACTGTGGCTGAGGTGGCACAGGGTCCCGAGCTGTCCCCTCAGAGCGTGGATTTGTTCCACTCTGTGAAGCTGCTGTCAAAGTCAGTCGCATATTTGAATGTTGCGTTctcaaaaactgtcaaaaaccaCTAGAAGGATGGAGCTTTATCCACTGTCAACATCTCTGGGGCCATTTGACTCTGTGCCACCTCTGGCTCTCAGCCAGGGGCCTCCTCTCCAACCACTTCTGTCATGGTGAGACCTGTGTCCGTCCTGTTGTAACCTTATCATAATAAAGTTTTTCCTAACGCAA

Function

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73600 lncRNA downstream 2668 33952265 ~ 33952658 (-) True G55119
TU73569 lncRNA downstream 3644 33865954 ~ 33951682 (-) True G55093
TU73568 lncRNA downstream 5317 33916095 ~ 33950009 (-) True G55092
XR_005639136.1 lncRNA downstream 79906 33857451 ~ 33875420 (-) True LOC120558540
TU73523 lncRNA downstream 123767 33831049 ~ 33831559 (-) True G55050
TU73615 lncRNA upstream 118900 34080058 ~ 34081936 (-) True G55128
TU73623 lncRNA upstream 136349 34097507 ~ 34107307 (-) True G55133
TU73609 lncRNA upstream 156746 34117904 ~ 34122520 (-) True G55124
TU73611 lncRNA upstream 156746 34117904 ~ 34127495 (-) False G55124
TU73627 lncRNA upstream 167080 34128238 ~ 34128796 (-) True G55137
XM_039799669.1 mRNA downstream 190722 33763783 ~ 33764604 (-) True taf13
XM_039800458.1 mRNA downstream 223854 33730330 ~ 33731472 (-) True LOC120559034
XM_039799262.1 mRNA downstream 244559 33696847 ~ 33710767 (-) True si:rp71-17i16.5
XM_039801161.1 mRNA downstream 285687 33619197 ~ 33669639 (-) False lamb2l
XM_039801163.1 mRNA downstream 307461 33618623 ~ 33647865 (-) False lamb2l
XM_039801847.1 mRNA upstream 173101 34134259 ~ 34165964 (-) False snphb
XM_039801846.1 mRNA upstream 173101 34134259 ~ 34165964 (-) True snphb
XM_039799249.1 mRNA upstream 275408 34236566 ~ 34291069 (-) True ntsr1
XM_039799951.1 mRNA upstream 372440 34333598 ~ 34375503 (-) False slco4a1
XM_039799952.1 mRNA upstream 372440 34333598 ~ 34375503 (-) True slco4a1
TU73247 other downstream 1068036 32880193 ~ 32887290 (-) True G54834
TU73146 other downstream 1181840 32767357 ~ 32773486 (-) True G54756
TU73036 other downstream 1633374 32316960 ~ 32321952 (-) False LOC120558955
TU73035 other downstream 1642548 32306922 ~ 32312778 (-) False LOC120558955
unassigned_transcript_235 other downstream 2728195 31227060 ~ 31227131 (-) True trnaq-uug_1
TU73607 other upstream 62860 34024018 ~ 34127495 (-) False G55124
TU73620 other upstream 126812 34087970 ~ 34093118 (-) True G55131
TU73610 other upstream 156746 34117904 ~ 34127495 (-) False G55124
TU73658 other upstream 329248 34290406 ~ 34290887 (-) False ntsr1
XR_005639223.1 other upstream 1308740 35269898 ~ 35277854 (-) True LOC120559165

Expression Profile