RNA id: XM_039801840.1


Basic Information

Item Value
RNA id XM_039801840.1
length 4086
RNA type mRNA
GC content 0.49
exon number 23
gene id pik3cd
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 23770631 ~ 23789093 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCCCGCAGGGCGCTGGGGAGGCAGAGCGCAGCCGCTCACGGTCAGTCAGCGCAACGACACCACTGCATGAATGACGGCGCATCTGACCGACGCAGGGGAACAGTTCAATGCTTTGCATGAGCTGTGTACGTCCGTTTGAGCTGGATTTCAAACACCTCACCTCATTTCAACTTCACGGGTACATCCGCAGACTATCAAGCCGCCTGAAGCGAGCCATGTCACCGTGATGTTACAGCCTCCATCTTCGCTGTAATTAAAGCATGAAGAGAAGACCGACTTGTAGAGCTGGCAGCAGAGGAGCTGACGGTAAATGAGAGGCCGTCACCATGCCCCCGGGGAAGTATGGGATGCAGGAGGAGGGGGACCAGGAGCTCATGATGGACTTCCTGCTGCCTACTGGGATCTTCCTCAAATTTCCTGTGTCTCCAAACGACACCatcaaaagcatcaaaaaaATGGTTTGGAAAAATGCCAGAAGTGAGGCCCTGTTCAGTGCACTGGGTGATCCCGACGCATACGTCTTCACTTGCATCAACCAGACAGCAGAGAGGGAAGAACTGGAGGAAGAATCGAGGCGCATTAGTGACGTGCGGCCCTTTATGGGTGTTCTGAGGCTGGTGGCGAGGGAGGGCGACCGAGTGGAGAAACTCACCAACACCCAAATCAGCCTGTTAATTGGCAAAGGTCTGCATGAGTTTGAGGCCCAGAAGAACCACGAGGTGAATGAGTTTCGGGCAAAGATGCGTGCGTTTTGTGAAGAGAAGGCTCAGGAGCGGCAGATGTTGCCATGGCAGCAGTGGATGGAATACAGCTTCCCCTGTGACCTGGAGCCGTGCTGCTCTCCGCCGGAGTGTGGGAGCGTGAAGTCAAAAAACACCAAGAAGATTTTCATCAACGTTAAGTTTGAGGCTTGTGATGAAAGCTTCATGCTGCAGCAGGACCTTCAGGACTTTCCATTGGCTCTGATGAAGAGCGCCCTGAAGAAGAAGGCCACCGTCTTTCGCTCAGTGCGACAGGAGCCCGAGGACTACACCTTACAGGTCAACGGGAGGTGGGAGTTCATCTATGGGAAACATCCCATGTGCCAGTTCAAATACATGTTCTCGTGTTTGAGAAATAACCAGATCCCTCATCTAACCATGGTGCATCACTCCACCATCAGCAAATACCAGGAGGAGCAGGGCAGAATGAGCAGCCAGGGGTACAAGACTCGCTCCTTGTCCAGACCTCCTCCACTGCCCCTGAAGAAGCAGAACACCTCATCTCTGTGGTCCATCAATGAGCCTTTCTACATTCACCTGCTGCAGGGCAGCCGAGTCAATGCAGACGAAGGAATGAAGCTTGTGGTGCAGGCCGGTCTGTTCCATGGCAGTGAACTCCTCTGTAAGGTGGTGACAACCTCGGAGGTGACAGTGTGCTCTGAGCCGCTGTGGGATCAGAAGCTAGAGTTTGACATAAATGTGGCTGACCTGCCTCGCATGAGCCGCCTGTGCTTTGCGCTCTATGCTGTCATTGAGAAAGCCAAGAAACCCCGCGGCACtaaaaagaagaacaagaaagCGGATTGTCCGATAGCCTGGGTGAACACCATGGTGTTCGACTACAAGGACCAACTGAAGACTGGGGAGTTCCTCTTGTCCACATGGCCATCTGTTCCTGATGACAAAAGTGACCTGTTGAACCCAATGGGAACAGTCGAGAAGAACCCCAATGTGGACAGTGCTGCTGGGCTTCTCATTCGCTTCCCTAACATCCGGCCACATCCTCTCTATTACCCTCCACTGGACAAGGTGAGTGACATGGAGAAGAATGGTGATGCAGCTATTGTCACAAAAGAAGAGTGCATGAAACTAAAAGAAATCATGGACAACAAAAACCACACTGAGTTTTTCGAGGATGAAAAGGACCTCTTGTGGAAGCTCCGCACGGAAGTCCGCGATCATTATCATGAAAGTCTGTCCAAGCTGCTCCTTATCACCAAGTGGAATCGGCGCGAGGACGTAGTTCAGATGATGAGTTTACTGAGGACCTGGCGGGACCTCCCTGCCATTCATGCCTTGGAGCTCTTGGACTACAGTTTTCCCGACCCAGTGGTCCGTTCTTTCACAATCAGATGCCTCAGGAAGCTCAGTGATGATGAACTGCTGCAGTACTTAATCCAGCTGGTCCAGGTCCTGAAGTACGAGTCTTACTTGGACTGTGACCTCACCACTTTCCTGCTAGAAAGGGCTTTGTCCAACTGGAGGAttggacactttctgttttGGCATCTCAGGTCAGAGATTCACGTTGCGTCTGTAAGTTTGCGTTTTGGGCTGATTCTGGAGGCCTACTGCAGGGGAAACATCCACCACATCAAGCTTTTAAGCAAACAGAACGAGGCTCTGGGCAAAATGAAGGCCCTGAGTGACTTTGTTAAGTCGGGCTCCCAGAAGATGACAGCTGATGACCTGAAGCTGTGTATCAGACAGGAGTCCTACCTGGAGGCTCTGTCAGACCTGCTGTCACCACTCAACCCCAGCATCATCCTCGCTGAGATCTGTGCAGACAAGTGCAGGTTTATGGACTCCAAGATGAAGCCGATCTGGCTGATGTATAACCCCTGCACTCAAGAAGACATGGTGGGCATCATCTTCAAGAACGGTGATGATCTTCGACAAGACATGTTGACCCTCCAGATGATCCAGCTGATGGAGAATTTATGGAAGAGAGAAGGCCTGGATCTCAGGATGATCCCATATGGCTGCTTGTCCACTGGGAACAAGATGGGGCTCATCGAGGTAGTGAAGAACTCCGACACTATCGCCAACATCCAACGTAACAGCAGCAACAGTGCTGCCACCGCTGCCTTCAACAAGGATGCCCTGCTCAACTGGCTCAAATCTAAGAATCCTGAGGACAAACTTGATCGAGCAATAGAGGAGTTCACACTGTCCTGTGCTGGCTACTGTGTAGCTACTTACGTCCTGGGCATTGGAGATCGTCACAACGACAATATCATGATCAGGGAAACTGGACAGCTGTTCCACATTGACTTTGGGCATTTCTTGGGCAACTTCAAGCGGAAACTGGGAATCAACAGGGAGCGTGTGCCTTTTATCTTGACTTATGACTTTGTCCATGTGATCCAGCAAGGAAGGACGAACAACAGTGAGAAGTTTGAGAGATTCAGGGAGTACTGTGAGCGGGCCTATAAGATCCTGTGTCGAAACGGGACGCTGTTCGTCAACCTCTTTGCCATGATGAAGGCAGCAGGACTGCCAGAGCTCACCTCCTTCAAAGACATCCAGTATCTAAAGgaCTCTTTAGCTTTGGGAAAATCAGAGGAAGAGGCCCTGAAGAATTTCAAAGTGAAGTTCAACGAAGCTCTGCGTGAGAGCTGGAAGACGAAGGTCAACTGGATGATGCACTCCTTGGCCAAAGATAATAGACCGTGAAGAACACTGCGCCAAGGAAACCTGAAGACCAACCAACAATTATGGATTTTAACTTATGGAGATAGAAGGGAAGAAAACACAATCAAATATGTTACTTTATTGATGGCATTCAATGACACTCAGCATATGTTTACATCTGACTGGCCTGTGTGTGGAGGCATCCAAAGATGACATAACTATGGAGCATAATCTCAACACAGATATTTTCACAATGAAGAAAATCCAGCACAGTCATCTTTCGCCCATCGAACATTGGGATGACTTTGACTCGAagacaaaaattaaaaacatgcttttttgaTGTGTTTAAATCGCTACTTGAAAACCACCGGCACGTGCAAAAGTGTCATGAATCCATGAAATAGAAGCAGACTGAAAGTTCATCTGACCGACTGCATCACTCAGCAGGGAGCAAACTTCAAACAAACTTTATGATGACTTTAGACGACACCGTTCAGTCACAGAGTTCAATAACAGGGCGATAGTTTCACCTCAAGTCTTTTGTACCGTTACGGTGGCTGTGTCATTTCCACTCATTTCAACTGTCTCTTTGCAATTgtgtctttttgttattttattgtatttaatttaaatcGGTAGCTGTGAGGTACATGTACAAAGTCATGAAGGATATTTTAAAGGTTTTTA

Function

GO:

id name namespace
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0048015 phosphatidylinositol-mediated signaling biological_process
GO:0005524 ATP binding molecular_function
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K00922 PIK3CA_B_D; phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha/beta/delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70181 lncRNA upstream 83270 23686438 ~ 23687361 (+) True G52569
TU70174 lncRNA upstream 83615 23686352 ~ 23687016 (+) False G52569
TU70175 lncRNA upstream 83615 23686438 ~ 23687016 (+) False G52569
TU70102 lncRNA upstream 323074 23447353 ~ 23447557 (+) True G52509
XR_005639093.1 lncRNA upstream 495490 23265329 ~ 23275141 (+) False LOC120558323
TU70232 lncRNA downstream 355 23789448 ~ 23790522 (+) True G52604
TU70233 lncRNA downstream 2386 23791479 ~ 23800868 (+) False ctnnbip1
TU70231 lncRNA downstream 25039 23814132 ~ 23814406 (+) False ctnnbip1
TU70245 lncRNA downstream 48599 23837692 ~ 23837962 (+) True G52611
TU70294 lncRNA downstream 220703 24009796 ~ 24011101 (+) True G52628
XM_039800770.1 mRNA upstream 5466 23746365 ~ 23765165 (+) True tmem201
XM_039800771.1 mRNA upstream 13463 23746365 ~ 23757168 (+) False tmem201
XM_039799492.1 mRNA upstream 25165 23744072 ~ 23745466 (+) True foxl2l
XM_039801910.1 mRNA upstream 141711 23613688 ~ 23628920 (+) True plekhn1
XM_039801911.1 mRNA upstream 141711 23613688 ~ 23628920 (+) False plekhn1
XM_039801523.1 mRNA downstream 2354 23791447 ~ 23814406 (+) True ctnnbip1
XM_039799300.1 mRNA downstream 60521 23849614 ~ 23890973 (+) True clstn1
XM_039799303.1 mRNA downstream 60522 23849615 ~ 23890973 (+) False clstn1
XM_039799301.1 mRNA downstream 60522 23849615 ~ 23890973 (+) False clstn1
XM_039799304.1 mRNA downstream 60522 23849615 ~ 23890973 (+) False clstn1
TU70197 other upstream 5478 23759234 ~ 23765153 (+) False tmem201
TU69870 other upstream 923693 22842066 ~ 22846938 (+) False lamtor5
XR_005639388.1 other upstream 1208110 22562154 ~ 22562521 (+) True LOC120559933
TU69718 other upstream 1210303 22556329 ~ 22560328 (+) True G52210
TU69473 other upstream 1675741 22093905 ~ 22094890 (+) False LOC120558641
TU70648 other downstream 1164349 24953442 ~ 24957330 (+) True G52871
TU70864 other downstream 1954517 25743610 ~ 25748317 (+) True tprg1l
TU70970 other downstream 2282492 26071585 ~ 26076664 (+) False G53096
TU71155 other downstream 2563367 26352460 ~ 26353463 (+) True G53232
XR_005639211.1 other downstream 2590583 26379676 ~ 26382295 (+) True LOC120559113

Expression Profile