RNA id: XM_039801846.1


Basic Information

Item Value
RNA id XM_039801846.1
length 2867
RNA type mRNA
GC content 0.57
exon number 6
gene id snphb
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 34134259 ~ 34165964 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTCCATCCTCACGCGTCATCCATCCAGCGcacccctctcctctcctctcctctcctgcccTCTCCCCGGGTGTGTGAGCCAGGATCACCGCTCCATGCAGCGGAGAACCGCAGGGAAACGGTGAAACCCGAGGCGATGGAACCGCGAGAGGACTAACAGTGTTACGGGAAAGGGGGCACAGGCTCTCAGTGTTGAGCTGAAGAACGGAGAGACAAACTGAGGACAGAACAAGCTGAAGGTTGCACAAGAGGCTGTCTGGCCCCATGTCTGCCCCTGCTCCAGCCAATCGGAGGTCTGCGTTGGGCTCTCGCCGGTTTGACTACTGCAGGTTCATAGAGCTAGACTACGTTCCTATGGAGACAGGCTATATGGTCTCAATGCGCCCGACTAAAGGCTACGCATCGAACAAGTCGCCGACTAAAGGATACGCTTCCACCAAGTCTCCAGATCGCCACAGCCGTTCGACGAACTCTCCGTCGACCCCTCGTTGTCGGCGGACCCCGGCCGCGCCTAGTAATAGAGATCCCCATGGCAACACCTCCCTTAGCAACAGCAGCAACTCAGGCTCTTGCAAAGGCAGCGACTGCAGCCCCACCAAAGGACGTCATCAGAAGTACACGTCATGTACGGACAACCATGGTATCCGGCCCCCTCCACCAGAGCAGTACCTCACACCACTGCAGCAGAAAGAGGTGTGTATCCGACACCTGCGGGCCAGGCTGAAGGAAACCATCAACACTCTACAAGACAGGGACACAGAGATAGATGAGCTGAGAGGCCAGCTATACAGGATGCAGGAGGACTGGGTTGAGGAGGAATGTCACCGTGTTGAGGCTCAGCTGGCCCTGAAGGAGGCGCGTCAGGAGATCCAGCAGCTTAAACAGGCTGTGGACACTGTTCGCGCCAGTCTCAGTGATGCTGGGGGGCTCAGCGGGGACATAGGGGTCCAGAAGTACTTTCAGGACATCAACACTCAGAACCACAAGCTTGAGAACCTTTTGCTGAGTATGGACCTAGCTCAGGCTGGATTAGCCAAGGAGGGGGAAGGCATTCCAGGCTTTCGGACCCGTGTCGGAGGTTCGGCACCAGCATCGGTATCAGGGGAAAGTCCAGGGGGAATACCCAAACCGGCAGTAGGAGGGAGGGGGTCTTGCTCCTGCGATGCTTCGCCAGCCCGTTCTCTGACCCGGAGCTCCACTTACACTAAGCTGAGTGATCAGGCGCTTGCGGACCGGAACGGCAATGGCCTGGACTTTCCTTGTCTGTCAGGGGACGGCACCCAGGACAGCGGCTTTGTGTGCTGTGGGGAGAGCAGCGTCCCCAGTCGGACCGACCTGCTGCTGGAGGCAGCCTTCCTCTCTGAGGAAACAGCATCTTTACTCAACTCCTACGCACAGACCTTTTCCCATTCTCTACCCCATTCTCTACCCCATTCTCTGCCCCATTCTCTGCCCCACTCTCTGCCCCACACTTACTCCCATACCTTACCTCATTCTTCCCCtttcccccccacccaccccaccccccccccccaaggcccccccccccccccctcccgcgCCATCCATAAAACACTTGTCCCTCTATCCCACCACCACCTCTACCTGCACCCCCTGCGGGAGACAGGCATTCAGACCGAAAGCTGCCCCATACCTGCAACGGCAGCTTACCCCTCGGATCTGGATACCATTGCGGAGCAACGCACTTTCCGCTCCCAGGCCTGCAGCCCCACCTCTACCTGGATGTCTgatgagggggaggaggagctggACTCCATCACCACCATAACTTCAGTAACCACAGCGACGATGATGAGTACAGCCACAGAGCCGATCCCGGTTACTAAGACTCCTCTGGTCCCTCCCTTACCACGGTCCGCTACTGTGGCATGTTCCATGGAAAGTCCTCTAtatggagaggaagaggaaaagcaggagaaagagaagggagagaaggaagCTGGACAGGAGGAAACGACAGCGATTAGATTGGCAGAAGAAGAGCAGCGGATGCAAATGGGctcagagggagggaaggaggtggAAGTTCAGAGTGCAGAAGAGGAGGTAGCACCAGGAAAACCCTGCGATTTTGCAGAGACATCGGCAGGGACACAGGGTGAGCTTCAGTTTGGAGGATGCTGTGGAGAAGGCAGACAGGGTGGGACACTGGAAAACCTCAGCATGGAAGACAGGCAGCGAGACATTGGTTTATCAGTACGATCGACCCAGGTAGAGACAGCACAGCTGAGCCCAAGTAGCCCAGGATTCTCGCCAGACGTAGAACAGCCTCACACCTCCCAGCCGAGGAGATCCTCTTCCCATGAGGAGATAGCTGGTGTCACTGTAGTGGAGTTGCACGATGAGaacgatgatgatgaagatgaaacTAAAGAGCAAGGCGCCACAGGGGGCGCCGCAGCAGAGGAGGGAGATTCAACCAGCTCTGGGACAATTGAGAAAAGCTACTGGAGTCGTCACTTCCTGGTTGATCTGCTGGCAGTGGCCATCCCTGTGGTGCCAACAGTGGCGTGGTTCTGCCGTGGCCCAATCCGTGCCGGACAGCCCATGTACCATATAGGCTCGCTGTTGCGAGGCTGTTGCACTGTGGCGCTGCACTCGCTGCGCCGGGGAGGGGGGTTGAGGCATTACCCTGCAGGCGGGGGTGACCTGGGCGGATCACAGATATAACAGGAGAATCTGTCTAGCACCTCTGTGGTCCTTAGCCTCTCCTGTATGGGTCTTGGCTTGTTGGAAGATACCTGtagtgtgaggagaggaagagaaaaaacgGTAACACATTACttaaaggtatctacataagagtgacatgacactgtcatgaacatgacacgaaccctaactct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73627 lncRNA downstream 5463 34128238 ~ 34128796 (-) True G55137
TU73611 lncRNA downstream 6764 34117904 ~ 34127495 (-) False G55124
TU73609 lncRNA downstream 11739 34117904 ~ 34122520 (-) True G55124
TU73623 lncRNA downstream 26952 34097507 ~ 34107307 (-) True G55133
TU73615 lncRNA downstream 52323 34080058 ~ 34081936 (-) True G55128
TU73659 lncRNA upstream 100831 34266795 ~ 34267033 (-) True G55166
TU73718 lncRNA upstream 214101 34380065 ~ 34407170 (-) False G55190
TU73721 lncRNA upstream 214101 34380065 ~ 34407170 (-) True G55190
TU73727 lncRNA upstream 227349 34393313 ~ 34407170 (-) False G55190
TU73741 lncRNA upstream 391217 34557181 ~ 34557690 (-) True G55203
XM_039801839.1 mRNA downstream 170319 33955326 ~ 33963940 (-) True LOC120559811
XM_039801837.1 mRNA downstream 173097 33955326 ~ 33961162 (-) False LOC120559811
XM_039801836.1 mRNA downstream 173101 33955326 ~ 33961158 (-) False LOC120559811
XM_039801838.1 mRNA downstream 173295 33955326 ~ 33960964 (-) False LOC120559811
XM_039799669.1 mRNA downstream 369655 33763783 ~ 33764604 (-) True taf13
XM_039799249.1 mRNA upstream 70602 34236566 ~ 34291069 (-) True ntsr1
XM_039799951.1 mRNA upstream 167634 34333598 ~ 34375503 (-) False slco4a1
XM_039799952.1 mRNA upstream 167634 34333598 ~ 34375503 (-) True slco4a1
XM_039799950.1 mRNA upstream 167634 34333598 ~ 34353531 (-) False slco4a1
XM_039800655.1 mRNA upstream 624649 34790613 ~ 34842286 (-) False plagl2
TU73607 other downstream 6764 34024018 ~ 34127495 (-) False G55124
TU73610 other downstream 6764 34117904 ~ 34127495 (-) False G55124
TU73620 other downstream 41141 34087970 ~ 34093118 (-) True G55131
TU73247 other downstream 1246969 32880193 ~ 32887290 (-) True G54834
TU73146 other downstream 1360773 32767357 ~ 32773486 (-) True G54756
TU73658 other upstream 124442 34290406 ~ 34290887 (-) False ntsr1
XR_005639223.1 other upstream 1103934 35269898 ~ 35277854 (-) True LOC120559165
XR_005639224.1 other upstream 1103936 35269900 ~ 35277854 (-) False LOC120559165
XR_005639222.1 other upstream 1103936 35269900 ~ 35277854 (-) False LOC120559165
TU74116 other upstream 1238640 35404604 ~ 35409766 (-) True G55492

Expression Profile