RNA id: XM_039801878.1


Basic Information

Item Value
RNA id XM_039801878.1
length 2644
RNA type mRNA
GC content 0.44
exon number 6
gene id dffa
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 24325261 ~ 24334067 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGCAATAGTTTTCGTTCGGTAACTACGTTCTAGCATGTATCCACCAGGCGGCGGTTCCGTGTTGAAAACTGGTTGAAAACTGCCAAGACAAGACAGGCGAGAACTACTGTCGGTATTTGAAACTGttcagtaaaacaaaatacgTTTCTCCACATAAAGCCTAGAATGACAGATAGGAAACCGTGTAAGGTGTGCAATTTCACACGACAGAAATCATACGGTTTGGTAGTTCCCTCTTTGGATGATCTGAAGATAAAAGGATGTGAGTTTCTTGGGTTCAGCCCTGGTGAGCCGGTCACAGTGGTCTTAGAGGATGATGGGACGATAGTACAGGATCAAGCCTACTTTTTGTGTTTACCTTCAAACACAAAGTTCATGCTGTTGCATGAAAAAGAGACATGGTCTCCAGGTTGCAAGATGGATGGTGGCACGGCCTGGATGGCCAGAGATTCTATGGTGCTGGAGGCCGATACTGTGGACAGCTCCAGTGCTGCAGCACACTGGTGGCACCTGGCTCAGCAGCTAAAGCAGGACCTTGCCAGCATCATCCTCATGTCTGAGGCAGACTTACAGGCCTTAGTGGATGCCCCATGCCCTGAGCTAGCCTCTGCTATGGGCTTCGAAGAGAAGAAGGCAGAGGATCTGCAGGAGACACTGCAGGGAGTTTTGGACCGACGAGAGGAGGAGAGGCAGTCCAAGGAACTGCTCCAGCTCTACCTCAAAGCTGCGGTGAAAGAGGACCAACAGCAGGAAGTGCCAAGCCAGCCCAGCCAGGAAGGGGCTGGAGACGTGGAGGTGGATGCGGTGGAGGTGGACTCTGCATCCGGATTCATGTCCAGGACACTGATGGTCCTGAAAGGCAAAACAAGCCCAGAGACCAGACTCTCCACTGAGGAACTGCAGATGGTAGTGACCAGAGGGACGGAAGCTATGGAGAAGGTGTTGGGCTGGGACAGAAGGAGGACGTCTGCGCTGCTGCACGCCTGTGAAGCCGAGCTGACCGGGCGTCTCCAGCAGGTTCAGGCCGTGCAGTCCATCAGGAGCAACACACAGTTGGACAGGGTGCAGCgcgtggaggaggagggtgtaGAAACGCCAGCCCAAGGCAGCAACTAGATCAAGACTTCACCTGAGCAGAGACTGCTAAGAATTTACACTACCTGCCTCGGGGTTTGAATAGGATTTACCCTATGTTACTGGTAATATCCATAATGCTGCAATCCATGAATGTTTATGATGTTGATGTTTGCTTCATTTAGTAAAACTTGCAAACCACTTGAACGCTTTTGCCTCAAGAGGAAAAAGTCATGTTTATCAAAGACATGCTGGTGTTAACCACGGGCATCAGCTTACTATTGGCTCCTTTTTTTTGATGAGTGCCATGCTGTGAAAATAATTACAGATAAACATATCCATATGAAACTTAAAGcaaaacattttgagaaatatgcttattcgctttcttgctgagagttggTTTGAgaggattgataccactctcatgtgcCAGCACccagctagcttagcttagcttagcttagcataaagactggaaacggggatacggctagcctggctccgtaCTAAGCTCATGAATTACGCCTACCTGTGGACCTATAGggaacaaaaacatgtttgtaaatataaaaaaatcctTTTCATTTTGTACCACAGTGTATGTGCACCTTGGTGTGAAATGTCATCATTAACTGAGCATTTAGAAAAGCTCTGCCTAGAACAATGAATGGTAGGAATACCTAAATATGATGAGTGCAGGAACTCTCTACCCAAGGCACAAAACCAAAGTAACGTGTACAGCACTGGGTTAGAGTGACATGGAGTGCAGACAAAAACTGCAGGCAGGTTTATACTGAAAGAGAAAATTGTTTCTGAGATATATGCAAATCaatcaaatatatttataaaagcTGAATTTGAATGTGGTAATTAGACAAATTATTAATTCTAACAATAAGGAGTACAACAAGATAAGATGTGTATCACTCCATACAGGGAAGCTTCACTGAACACATGGTGGGTGGGAATGACAAAGCTTCATCTTTGAGTTGCATAGAACCAATATTTCTGGATGAGAGCTCCTTTAAGACCATCTATTATATACTATTTTTGAAGTTCTGTATCAGTCTAGTGGCTGCGTAATGTAAGATGGTGTGTACAGTGGGTCCAGGTCTGTGTGACTCATAGGCCATGTAGAAGATAGCCTTTGTCTTGCATGTCATGCATGTCATCTCATCATCAGACTCTTGAACAAGAAACCCATATGATGGTGGATGAATTTGCAGAGGGGTcatctttttgtgttttggtgAGATTGAGATGTCACCACCGGCTTGTACTTTAGTATTAAATACAGGGAAAAGTAGAGCATTTATCAAGGTCTCCTATTTAGTCAGTATTGTGTCTACGTCACACGGTTTCACCAAAATTAAGCTGTCACTCTGCTGTTTTATAACCCTGTTAGAATTGTCATGTGTCAGTTCCCTCACACTTTGTATTTAATTTAAACATGCAGGACAAACATACATAGGAAGTTGTATATGAGTGTACGTTATGTAATTTAGGTTGgcttttgtaaatgtgttgaaAGGTGTTTTTCTAAAATAAACCAGCCCTCAAACTTTT

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG:

id description
K02310 DFFA, DFF45; DNA fragmentation factor, 45 kD, alpha subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70416 lncRNA upstream 51225 24270121 ~ 24274036 (+) True G52728
XR_005639153.1 lncRNA upstream 251253 24061092 ~ 24074008 (+) True LOC120558580
TU70381 lncRNA upstream 251284 24061063 ~ 24073977 (+) False LOC120558580
TU70296 lncRNA upstream 311960 24012963 ~ 24013301 (+) True G52629
TU70294 lncRNA upstream 314160 24009796 ~ 24011101 (+) True G52628
TU70439 lncRNA downstream 26739 24360806 ~ 24362267 (+) True G52742
TU70454 lncRNA downstream 53086 24387153 ~ 24390127 (+) True G52756
TU70570 lncRNA downstream 371471 24705538 ~ 24705906 (+) True G52817
TU70586 lncRNA downstream 417828 24751895 ~ 24753180 (+) True G52827
TU70634 lncRNA downstream 606728 24940795 ~ 24945151 (+) False LOC120559118
XM_039799625.1 mRNA upstream 71474 24204375 ~ 24253787 (+) True casz1
XM_039800998.1 mRNA upstream 304337 24013889 ~ 24020924 (+) True c5h1orf127
XM_039800999.1 mRNA upstream 304337 24013889 ~ 24020924 (+) False c5h1orf127
XM_039801000.1 mRNA upstream 304337 24013889 ~ 24020924 (+) False c5h1orf127
XM_039801001.1 mRNA upstream 305263 24013889 ~ 24019998 (+) False c5h1orf127
XM_039800437.1 mRNA downstream 108821 24442888 ~ 24497151 (+) True LOC120559012
XM_039800278.1 mRNA downstream 225340 24559407 ~ 24630995 (+) True cntn3a.1
XM_039801005.1 mRNA downstream 376716 24710783 ~ 24715633 (+) True ttll9
XM_039801006.1 mRNA downstream 385708 24719775 ~ 24721848 (+) True ppp1r3da
XM_039801539.1 mRNA downstream 388222 24722289 ~ 24750342 (+) True sycp2
TU70197 other upstream 560108 23759234 ~ 23765153 (+) False tmem201
TU69870 other upstream 1478323 22842066 ~ 22846938 (+) False lamtor5
XR_005639388.1 other upstream 1762740 22562154 ~ 22562521 (+) True LOC120559933
TU69718 other upstream 1764933 22556329 ~ 22560328 (+) True G52210
TU69473 other upstream 2230371 22093905 ~ 22094890 (+) False LOC120558641
TU70648 other downstream 619375 24953442 ~ 24957330 (+) True G52871
TU70864 other downstream 1409543 25743610 ~ 25748317 (+) True tprg1l
TU70970 other downstream 1737518 26071585 ~ 26076664 (+) False G53096
TU71155 other downstream 2018393 26352460 ~ 26353463 (+) True G53232
XR_005639211.1 other downstream 2045609 26379676 ~ 26382295 (+) True LOC120559113

Expression Profile