RNA id: XM_039801922.1


Basic Information

Item Value
RNA id XM_039801922.1
length 4595
RNA type mRNA
GC content 0.52
exon number 13
gene id samd11
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 23502322 ~ 23557887 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAATTTCCCCAGAGGCAAAGAAATAAGAGACACGACGCGTAACTGCGACTGGTAATGATCACCGTAGGTAACATAATGTCCGGGGCTCAGGGCTAACCATGTCAGGTATTAACAGAGCGAGTGTGATTAAATGTGGGAGGTAGGAGCTGCGAGGCTGGCGGAGAGCGCTGCTGCCACTGCGAGCTGGAAACTATTGAATGGGAATCTATCCGGCAACTTCACCAGACGGCTGTCTCACGGCGACACGGGGGCTCTGCGTAAAACCAAGCGGCGCGTCTCCAAGTCTGGGTCAGCCCAACTCACAGACGGAGAGGACGCTGAAGTTGGATCGGGCGAGCATATTTTTACTTGTTTCCGGCGCTCGGCTCCCACTAACATGCCTGCCATCAAAAAGGAGAGGCTGGATGGAGACGACATGGCATTGACTGCGTTCAACCAGTCCGAATACCTGGCCCCTTTAAATGCCACCGCTATCCCCGTGGTGACCCCGCATCCGCCGCCCTACGACCACATTTTCGCCCATCACCGCGCGTACTTGGGGCTCCACGACTCGGCGCTGCATCACCAGCACCTCCACCATCACACGGACGACTTAATGCTGGAGAGGTTCTCCTCCATCCCCGACTTTCAGCCCTTTTTCGACAACGGGGAGCCGTGCATCGAGGTGGAGTGCGGGGAAAACAAGGCTTTGCTTTATATCAATAAATTGTGTCAAGGTAGTAAGGGACCCTCAATTAAATACAGGGGCGAGTGGCTTACCCCCAACGAGTTCCAGTTCGTCAGTGGACGAGAGACTGCCAAAGATTGGAAACGGAGTATTAGACACAAAGggAAAAGTCTCAAGACTCTTATGTCCAAAGGAATCTTACAGGTGCACCCTCCAATCTGTGATTGTCCTGGTTGTCGAATTTCATCTCCAGTGAACCGAGGGCGCTTGGCTGAGAAACGCACCATCCCCCTCCCCCCTAACCGAGTGCCCAAGAAGGAGCTGGCCTCCATCTTCAGCAGTGACGACAGTGAAGGCAGCGAGCGGGCCAGTGGGGATCATGCCCACATCAAACAGGAGGACGAGTTGCATTACAGTATCATGAGAAAGAGTCGTGACAGTGACCTCTCTACAATCATCTCCAACCTACACCACACCAGACAGCACGGCATGCCCGAGGGCCAGTCAGCCTCTGACCACAACACCAGTACTGGACACACAGATGACCTTCTAGGCAAGAGAAGAAGCTTCTCTCCCAACAGCAGCAGCGAGTGTCCCTCTGACAAGAAGTCTCGTAGCGTATCCCCCAAAGAGAACTCCCAGAGCCCGGTGGTGGAGGCAGGCGGCAGCCACGGCCACATGAGCCCTGAGGAGCACTACAGGCGTATGATGTCAGCGCTCAGCGAGCAAGGGTCCTATGAGGATCAGCAGCAACGGCTCTACCAGCTGGCGAGCAGCATGGGTCTGCCCGGCCACGGTCAGTCCACAGGCTCTGTATTTGTAGACTTGCTGCGTGCTCGCCAGGAGGCGTTGGCTGCAGCGGTTAGGAATCCAGCGGCCTTAGAAGCTCACCTGCCTTCTGCGGGCAGCTCCTCCTCATCCAGCCAGAGACGCAAACAGGGTCTGCCGCAGCACCGGGACGCACATTACACTGACAGAGAACTGTCCCACCCTCCACCCCTACTGTCCCCTCCAACTGCCCCTCACATCGCCTTAGGACATCACCTGCGGCCTCCTTTCCTGGGCATGCCCTCTGCTCTTTGCCAGGCCCCTGGTTATGGTTTCCTCCAACCAGCTCAAGCTGAGCTCTTTGCTCGGCAACAGGAGATGCTAAGGAAGCAGAATctggccagACTTGAGATGTCAGCAGAGCTGCTGAGACAGAAAGAGTTGGAAAGTCTCCACCAGCGACAACAGCAGCAACGTCTTCTGGGCTCCGACACTTTGGGAGCTCTGCCTTCCGGCCTGCCCCCTGACCATCCAGCCCTGCGGAGTCTCCACGACATCCCAGAGGGCCATCCGCTCCGTGAGGAACTGGCCCGCCGCTCAAATGCAATGCTAGTGCTTCGCCATGGGGCAGCCACACCCCTCCTAACCCTCAACCACCACCAGCATCAACAACCAGGGCCACCCTCCACACCCAAAGAAACCCAGGCACAGAGATCCACCGCTGGGCTAGATCCCGAATCCAGGAAGGCCCCCCGCAGGGCCCCCCAGACACAGCTCCATGCTGAGGATTccacaggaggaagagaggacagaggaagggagggagacacagaggtGCAGGATGAGGAGATGAAGGACTCGGACAGTGAGACAGAGATGTGTGAGGAGAGGCAGGACAGTGTCAGGGTCAAATCCAGCAGTAAACCcagggacagggagagagacgggGGTAAAGAGACTGGCAGCAAGGGAGTGTGTAACAGTGCCAAGGAGACTGGAGAGAGCTCCGGCAGGCTGAGCGCCGCTTGTAGTTCAGCAGGTACAGAGTCACCCAGTCGCCACCTCTTCACCCCTGGACTGGGCAAGGCTGACGTCAAGTACCACCTGCCACCTGGGTTCATGCCACCGCTGCCTGCTCTTCACACCCAGTCACTGCCCATTGGATTCCCCTACGCCAACCCCTACTTTCACACGGGCTCTGTGGGAGGTCTCTTCATGGATGGGGAGGACTCAGCCACAGCAAACCCTGTGGAGGACATCAGCAAGTGGAGTGTGGAGGACGTGTGTGGCTTCATAAGCAGCCTGGCCGGATGTGCTGAATACACACAGGTGTTTCGGGAGCAGGCCATTGATGGAGAGACATTACCGCTGCTCACTGAGGAGCACCTGCTCAACACCATGGGACTAAAGCTGGGGCCTGCGCTCAAGATCCgctcacagGTGGCACGGCGTGTGGGCAGACTTTTCTACATGACTGGCTTTCCACTGGCGTTCCCGTTTCCACCTTCTGCCACACTGCGCCCCCCAGAACGTGATCGGGACCCCCTGACCACAGCATCGGACaccccccttcctctctctctgtccctgccCCACAGACCCACCTCAACCAGCAGCAGCTCCTCTCCGTACAGCGGCCCCACCCCAGGGTGCTCCTCCCCCAAGCAGGAAAACGGTAACGGCTCCACGGTAGTGGGAAGATACGAGGCTAAAACTCCTTCGTAGGAGAGGACAAGCAGGTGTGAGGAGGGTAGACCTGCATAAAACTAACCTGACCTAGAGGTTGCTTATTTACCAGACTCTCCCCACCTTGGAACCTTTACGCTGAAATTTAGTGGAAAATATTGGACTGGAATAAAAGACAACTGAACCGTATCTGACAAACTAATCAGCTTCTGAGTTCCTCTGCAGTTGCTGCAGCTGAGCAGAATCCAAACCAACTGGGTTGGAAGGGAGACACATGAAGCGACAGGAACagagaatgagaaaaaaaaaaagaggaaaggagaCAGCTGGTCGCAGACAgcctgccaaaaaaaaaaaggagcgaAGTCCTGCCACAAATACGAAATTCTTGCAAGTCAGACAGTCAGACGCTAGCGGAaactcttccttccttcctgggCTGGAGGAAGCTCTGCTCACTTACTTTCTTTCTCTTGTCTCTCGGACTGCTCTCACCACAAGCCCTGCACAACccaggaattaaaaaaaagacgcCGCTCcccttttttcctctccctcGCCTGTTTCCCCGAGGCCAAACAGCAGTGTGGAGCAGCCTTTTTAAGAGGCTGGAGTTGAAGCATATGCTGAGCAGCACCAGATCTGTCCCTTTTATCACTGCAACTATGCATTCCACTGTCCCGATACCAAAGATGACCGGATGTGTGGAATTGAAATCATGTTTCATAACCTGCTTCTTTTTGCATTAATGGTCTCAGAGAAAGACTGGTCCAACAGGGAAATGCTAGGCTAGTGCCTCACATTATGGACTGTATTTGAGTGACACAGGTAGAGCTGTCATTTACAGACATACAAATGCTTAAAAATGTTGAAGTGGAAAAGCCTCAATGGCGGCTATGGTGTGGCTTACGTCATTGAATGCTTGTGTTGACTACTGTGGGAGGTAGGAAAAACATGCAAAATTTGTACAGAATCATGCTTAAGATGAAAATATCCTGAAGGTTAACATACGTGGTACTTTTTGTTAAATGTAGTTGCACGAATAAGATTTTCTTTACTGACAAAATGTGACTTTCTGAACTTTGGTGGTACTTTTGTTCATACTCTTattctgccatttttttttatgtgtaataTTAAGACGCTCAAATCTTGAATGCTACTTCAGCATATaaatatgaggaaaaaaatatttataggACTTTTGATGTAGTAGATAAAGCAGATTGATATTAATTATAATTAGCCCTTAAGATGGATTCCAAAGatacttttactttgttttatcttGGTTGCAGGGAAAAGAAATGAACAAAGCTCTTAATGCAAGTGTTTTAAATTTGTtatggattcttttttttcttaaactaCGCAAGCAAGCAATTAAATGGTCTCTAGATTTCCCTTCAAAAGTTTTGTCTTCATCCTATTTTTCTATTCACCACACAGGTGAAATAAATCCTAAAGAAATGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70102 lncRNA upstream 54766 23447353 ~ 23447557 (+) True G52509
TU70058 lncRNA upstream 227128 23265231 ~ 23275195 (+) True LOC120558323
TU70174 lncRNA downstream 128465 23686352 ~ 23687016 (+) False G52569
TU70175 lncRNA downstream 128551 23686438 ~ 23687016 (+) False G52569
TU70181 lncRNA downstream 128551 23686438 ~ 23687361 (+) True G52569
TU70232 lncRNA downstream 231561 23789448 ~ 23790522 (+) True G52604
TU70233 lncRNA downstream 233592 23791479 ~ 23800868 (+) False ctnnbip1
XM_039800436.1 mRNA upstream 56558 23353958 ~ 23445765 (+) True rerea
XM_039800182.1 mRNA upstream 182639 23306704 ~ 23319684 (+) False eno1a
XM_039801930.1 mRNA downstream 30494 23588381 ~ 23601648 (+) False klhl17
XM_039801927.1 mRNA downstream 30494 23588381 ~ 23601648 (+) False klhl17
XM_039801931.1 mRNA downstream 30494 23588381 ~ 23601648 (+) False klhl17
XM_039801932.1 mRNA downstream 30494 23588381 ~ 23601648 (+) False klhl17
XM_039801933.1 mRNA downstream 30494 23588381 ~ 23601648 (+) False klhl17
TU69870 other upstream 655385 22842066 ~ 22846938 (+) False lamtor5
XR_005639388.1 other upstream 939802 22562154 ~ 22562521 (+) True LOC120559933
TU69718 other upstream 941995 22556329 ~ 22560328 (+) True G52210
TU69473 other upstream 1407433 22093905 ~ 22094890 (+) False LOC120558641
TU69454 other upstream 1441678 22056721 ~ 22060645 (+) False avpr2aa
TU70197 other downstream 201347 23759234 ~ 23765153 (+) False tmem201
TU70648 other downstream 1395555 24953442 ~ 24957330 (+) True G52871
TU70864 other downstream 2185723 25743610 ~ 25748317 (+) True tprg1l
TU70970 other downstream 2513698 26071585 ~ 26076664 (+) False G53096
TU71155 other downstream 2794573 26352460 ~ 26353463 (+) True G53232

Expression Profile