RNA id: XM_039801928.1


Basic Information

Item Value
RNA id XM_039801928.1
length 4468
RNA type mRNA
GC content 0.47
exon number 13
gene id klhl17
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 23588381 ~ 23601648 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAcagcgctaacgttagcccaTTCATAGGCAATGCATTGTGACTTAAACAGCCgtgacttttattttattgtaatagTAGAATGATAAATGCAAAGTCTCAACTTAATGTTTTATCTTCAGAACTGGATAAGAATATTGGAATCTGAGTTTTTGCTGTGTGTTTGATTTGGTGACCGGGCTAACCGAGGTGGGGGGTGGTTCAGGTCCTGACCAATCATATCGCTTCTAAGTAAAACCCCGCCTTTCGCGCTTGCTTAGATTAATTTATCGAACGCACTTCCTGACTATTACCAAACAAAAGGTGGCGCTTAAGGTCGTGTGTGCTACGtcaaataataaacaaacatcCATTCATAACGTTTGACACTTGCGCTTAAAGAAATAACATCCTGTGCATTTCCCACGTGCAACCTCCTTCACACGGCATCACATTTCATCAGCATTGCTTCTTTCACCTCCGGCAGTTCAAGCTCCACCTTAAACAAACCGATGTCAGCttttatgcagttttttttgggggggattgACGTCAACCGCATACAGCACGAAACAGAGGCTTTCTTCATATTTCGTATGCTTGAGTCAGAATATGGACAGATAACCAGACACTGGTACAAATTTTAAACCAATCTGATTGCGGCAGCTGCTGATTTATCTCCCATCACTTTGAGGAAGACTCTGCGTCCAAGGATTACCGCAACACAATCACCGGATGCATACTATAACAGAAGCAATAGGTACAAAGATTGCTCAGGACACCTTTCATAACACCTGCCTCTCAGCAGATCAACTGAACTCCTCTCACAGTTGCCCAGAGTGCGGCCCAGGCAAGAGCCCGTGACCGCCACATCAGGCACCATGATGGAGGGGGGCATGCAGCTGCTCAACCGCGATGGCCACAGCATCTCGCACAACTCGAAGCGCCACTACCACGACTCCTTCGTGTCCATGAACAGGATGCGACAGCGCGGCCTGCTGTGTGACATTGTGCTCCATGTCTCCAACAAAGAAATCAAGGCACACAAAGTGGTGCTGGCATCCTGCAGCCCCTACTTCCACGCTATGTTTACGACTCTCGTTCTGTGTGACAATGCAGATGAGATGTCGGAGAGTCGGCAGACCCATGTCACCCTTCATGACATCGACTGTCAGGCTTTGGAGCAGCTGGTCCAGTATGCCTACACAGCAGAGATTGTGGTCGGGGAAGGCAATGTGCAGACGTTGCTCCCAGCAGCCAGTCTGCTGCAGCTTAACGGGGTGCGGGACGCCTGTTGCAAGTTCCTCCTCAGCCAGCTGGACCCCTCCAACTGCCTGGGTATCCGAGGCTTCGCTGACACGCACTCCTGCAGCGACCTGCTCAAGTCAGCCCACAAGTATGTCCTGCAGCACTTTGTGGAGGTGTCCAAGACAGAGGAGTTCATGTTGCTGCCACTGAAACAAGTCCTGGATTTGATCTCCAGTGACAATCTCAACGTGCCATCTGAAGAGGAAGTGTACCGGGCTGTGTTGAGCTGGGTGAAACATGATGTAGATGGACGCAGGCAACATGTACCTTGGCTGATGAAGTGTGTGCGGCTGCCACTGCTGAGGCGAGACTTTCTGATGAGCAACGTGGATACAGAGCTGCTGGTGCGACACCACTCCGAGTGCAAGGACCTTCTGATCGAGGCTCTCAAGTACCACCTGATGCCTGAGCAGAGGGGAGTCCTCAGCAACAGCCGGACGCGCCCGCGGCGCTGTGAGGGCGCCAGCCCTGTGCTCTTCGCCGTTGGTCAGTGTGCCCCTGAAGgtggTGGCAGCCTGTTTGCCATCCATGGAGACTGTGAGGCGTATGACACCAGGACAGATCGCTGGCACATGGTGGCGTCCATGTCCACTCGGCGGGCACGGGTGGGCGTGGCAGCCATTGGGAACAGACTTTATGCCGTTGGAGGGTATGATGGAACCTCAGACCTCGCCACCGTGGAATCCTACGACCCCATCACCAACACCTGGCAACCTGAGGTTTCCATGGGCACAAGGCGGAGCTGTTTGGGTGTAGCGGTCCTGCATGGCCTTCTATATGCTGCTGGAGGTTATGATGGAGCTTCCTGCCTTAATAGTGCAGAGCGTTACGACCCTCTGACCAGTACATGGACCTCCATTGCTGCCATGAGCACCCGTAGGAGATATGTCCGAGTAGCAACTCTGGATAGCAGCTTGTATGCAGTGGGAGGTTATGACAGCTCCTCACATCTTGCAACAGTGGAGAAATATGACCCCCAGAGCAACACGTGGATAGCCATTGCAAACATGCTGAGTCGACGCAGCAGTGCTGGGGTGGCCGTGTTGGACGGCATGCTGTATGTCGCAGGAGGCAACGACGGCACCAGTTGCCTGAACTCTGTGGAGCGGTTTAACCCCAAGGCCAACACCTGGGAGGGGGTGGCCCCCATGAACATACGCAGGAGCACCCATGACCTGGTGGCGATGGATGGCTGGTTATACGCAGTAGGAGGTAACGATGGCAGCTCCAGCCTCAACTCCATCGAGAAGTACAACCCGCGCAGCAACAAATGGGTCGCGGCCTCCTGCATGTTTACACGGCGCAGCAGTGTGGGTGTCGCTGTGTTGGAGCTGCTGAACTTCCCACCACCCTCCTCACCCACCCTCTCGGTTTCCTCCACCAGCCTTTGACACGGGGTCACCGCTTGGCTGACCTCGGCCTCTGCTGCAACATCCCAGACTGGCTCTGGGAAGAGACGCAATTGCTCGGTTTGAGACGGGGAGCAGGAGTACGCGAGTGGACAGGTAAATGGATGCaggggggagaaagagggaaggTGTGGATAGGGCTCCTGGCTTGGTTATTATACAGTACCCTCCAGAATTAGTGGCACTCATGCAGTGGGTAAAGGTTAGCCAAACATGGTTTAAAAAATGTACAACATAAGTAATgaactttaatttaaaaatcaaGGCAATTTAAAAGTTTTTAATGTGCAGTACCCTTTAATCTCAAAAGACATGTTCCACACGTAACATGTATTAATTTTTCGTGAACAGTTAAGGGATGCCAGATGAATTCTGAAAGATCCACCAAGAGGTTTTTTGATTTCATGGTTAAACCAATCTTGCTGCTCTTTACCAAATTTTCCATTCATTCTGGACTGAACTGTATCTGGTCTGGATGCCTgaaactccactgtatagctcCACCATACAGATACCAGCTCCCACTCTCCAAGAGTACAAAGATGTTTCCTGATGTGTGAACATTGACCGATCTTTCCTCAAGCtccacttttttcccccccaccacTCCAGTGTTTGACACACTCATAGTGAAATGTGGTGGACACTTTAATTCTGTCATGTGTGacgtaaatgtttttgtttcgaTGTTGCTGTCCTCTGCATCTTTTAATGTCCGAATTATTTTGCAATAatgtacaaaaaaaagagaaactgaatGATTTCACTTTTTGAATGTAGCTTTTGACTGGGTATACCATGCATGTGTTTACTTCTTGGCATTGACTCCCAACAGGAGGATAAAATGTTGTAGTGCTGCTATGCCACAGTAGGTGGCAGTAACAGGCAATGTTATAAACCCTTCCCACACTGCAAGACCGCATGGACACAACCAACAAAAGAGAAGTTAAGCCCTCAGAACTGTATGAGTtagaatcatttttttttttttatttatatatataaacacagaaGAATTATGTTGAactatatgtatttataaaaatgtataaattctAATATATTCTGTTTTAAAGATGCTTAAAGAAGGAAACagattgtttttaatatttatttaggTGTGATATCGTCAATGAAAATGACAAAGAGAATGTAGGTGTGAGAGAGGTAGGCTAGTTGTTCAGACTGTGTGCATTTGGAGTTACTCCTGGTTAAAAGGACCGATTGTTGCACTTTGATATGCagcattttatttacatttcctAATGTTCCTTCACTGCCACAACCTTGATCTCACATGAAACTGTCTGCTATATTTGTGCAAAAGGCTTTAACTGCTTGCAAACCTATAGACCAGTCAATGAAAGGACGCTATATTGTCTTTAATCCTACTTAACAATTAGTTTAAGTGGACATGAAGGTGGATATAATCCTTGGACACAATGACTAACTGACTCTAAAATTACATTAAAGCAGAAAGTACTAGTCTATCTACTGTGTACCAACACTTGACACTAATGATAAATGCTGTTGACACTTGGTGCTGTCATATTTCCTTCCATACATAATCAAGTGTGGTGTCTTGTTATATTACATACCTCATTGTTGAAATGGATCTGACTCTATTGCAACAAAGTTGAGCTAGAAAAAACTGTATAATTACCTACAAATATTCTGGCTTTAGAGCATGTGGTGGGTGACTTGGGAATGTCACCACTTAATGTGCATTGTCTAAAATAAATGGATTACTTTGAGTCTTCTTGACTCCGTTAA

Function

GO: NA

KEGG:

id description
K10454 KLHL17; kelch-like protein 17 (actinfilin)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70102 lncRNA upstream 141116 23447353 ~ 23447557 (+) True G52509
TU70058 lncRNA upstream 313478 23265231 ~ 23275195 (+) True LOC120558323
TU70174 lncRNA downstream 84704 23686352 ~ 23687016 (+) False G52569
TU70175 lncRNA downstream 84790 23686438 ~ 23687016 (+) False G52569
TU70181 lncRNA downstream 84790 23686438 ~ 23687361 (+) True G52569
TU70232 lncRNA downstream 187800 23789448 ~ 23790522 (+) True G52604
TU70233 lncRNA downstream 189831 23791479 ~ 23800868 (+) False ctnnbip1
XM_039801924.1 mRNA upstream 30786 23502322 ~ 23557887 (+) False samd11
XM_039801922.1 mRNA upstream 30786 23502323 ~ 23557887 (+) True samd11
XM_039801925.1 mRNA upstream 30786 23503345 ~ 23557887 (+) False samd11
XM_039801923.1 mRNA upstream 32221 23502453 ~ 23556452 (+) False samd11
XM_039800436.1 mRNA upstream 142908 23353958 ~ 23445765 (+) True rerea
XM_039801910.1 mRNA downstream 12040 23613688 ~ 23628920 (+) True plekhn1
XM_039801911.1 mRNA downstream 12040 23613688 ~ 23628920 (+) False plekhn1
XM_039801912.1 mRNA downstream 12040 23613688 ~ 23628920 (+) False plekhn1
XM_039799492.1 mRNA downstream 142424 23744072 ~ 23745466 (+) True foxl2l
XM_039800770.1 mRNA downstream 144717 23746365 ~ 23765165 (+) True tmem201
TU69870 other upstream 741735 22842066 ~ 22846938 (+) False lamtor5
XR_005639388.1 other upstream 1026152 22562154 ~ 22562521 (+) True LOC120559933
TU69718 other upstream 1028345 22556329 ~ 22560328 (+) True G52210
TU69473 other upstream 1493783 22093905 ~ 22094890 (+) False LOC120558641
TU69454 other upstream 1528028 22056721 ~ 22060645 (+) False avpr2aa
TU70197 other downstream 157586 23759234 ~ 23765153 (+) False tmem201
TU70648 other downstream 1351794 24953442 ~ 24957330 (+) True G52871
TU70864 other downstream 2141962 25743610 ~ 25748317 (+) True tprg1l
TU70970 other downstream 2469937 26071585 ~ 26076664 (+) False G53096
TU71155 other downstream 2750812 26352460 ~ 26353463 (+) True G53232

Expression Profile