RNA id: XM_039801954.1


Basic Information

Item Value
RNA id XM_039801954.1
length 2202
RNA type mRNA
GC content 0.52
exon number 8
gene id ptk6b
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 825255 ~ 847622 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTCTCTCTCAGCAGCGCAGCCCGGAAGCTTCGCTGCAAAGGCATTCCGAGGATTCCTCCCCCCCGTCCGACAGGTGTAGCCGGCTGCGCTCAGTTGGAGGCACACGGGGGCGCGGAGGCTGAGAGAGCGTCATTCATGCTCATCTATGGGTGAGTGTCTGCGGAAAGCTTGCCCATGTCTGGACGCACTATGGCAGAGGATTTTCGGCGAAAAGCCTccagaaggagaaggagaaggaggaggaagcggcggcggggaggaggagagaccgAGACCAGCCAgtccgccgccgccgccgccgctggAGAGCGGCTCCATGTACACGGCGCTGTGGCCCTTTCAGTCCCGGCACGTGGACGAGCTGTCCTTCAATGAGGGGGACCTGTTCAGTGTTGTCAGCCGCAGCGGGGACTGGTGGACCGCACGGAAAATCGACAAGAACGGGTGCGTCCTGGACACCGGGATCGTTCCCAAAAACTACCTGGACCGGGCCGAGTCCCTACGAATCCAGCCGTGGTATTTTGGGACAATGACCCGCCATGAGGCCCAAAGCCACCTGCTGGGATCAGGAAACGATCACGGAGCTTTCCTCATCCGACGCAGCGCGAAAGATGACATTGGATACGTTCTTTCACTGAGGTCCAGCAGTCGGGtgaagcatttcaaggtcctcAAAGCAGATGAGAGGAATTTTTACGTGGAGCACGGCCGCCATTTCAGCTCTCTGATCGACTTGGTGGAGTACTACCGCGCAAACAGCCTGAACAACACCGGCACGCTGGGAGTCTCCTGCAAGAGGAAAAAGCCCAGCACTCGGGACTTGAATCATTTTACGGTGGATGAGTGGGAGCTCCCCAAAGAGGAGTTCACCTTGGAGGAGGAGCTGGGCAGCGGCTACTTTGCTGACGTCTACAGGGGGCGCTGGAAAAACCACATTAATGTCGCCATCAAGATCATCAAAAGTGATTCAGAGTTGAACCACCGTGAATTTCAGAGCGAAGTTCAGATCCTAAAGCGTCTCCGCCATCGTCACCTCATCTCTCTGTTTGCCGTGTGCACAGCCTCGGCACCGTACTACATCATCACCGAGCTGATGGAGAAAGGCAGCCTGCTCAGCTTCCTCAgagGTCCAGAGGGGCCGGCCCAAGATTTTGTGTCTCTCATTGACATGGCGGCCCAAGTGGCTGATGGGATGGCATACCTGGAGGAGCAGAACAGCATCCACAGAGATCTGGCGGCTCGAAACGTTCTGGTGGGAGAGGACAACATCTGTAAGGTGGCCGACTTTGGATTGGCCAGAGTGATCAAGGAGCCGTTCTACATCACAGAAGATAAAAAGATTCCCTTCAAGTGGACCGCTCCTGAGGCCATCAGCCATGGGAAGTTCTCCAACAAGTCAGACGTCTGGTCTTTTGGTGTGTTGCTCTATGAGATTGTCTCCTGTGGCGGTGCTCCATACCCAGCCTTTAGCAACCAGGAAGTGTACCAGCAGGTTACCAACGGGTACAGGATGCCAGCCCCGGCCAAATGTTCCAACTCTCTCTACCAACTCATGCTGAAATGTTGGAGCTTAGAGCCCGACGACAGGCCAGACTTCAAGACTCTCAAGGCCAAACTGGACAGCAGCTCTTACGAGTTGGAGAGTGACtaatttccttttttgtctGACTAAACAGAAAAAGCAGTCACATTAGGGAGGCtgaaaccagagcatgtttggCCATTCGACAAGAGAAAGTTCAgtaaaattttatttatagtatcaaatcataacaacagttatctcgagacactttacagagagtaggtctagaacaaactataatttacaaagacccaacaattccaataattcccacaagagcaagcatttagtggcgATTATTGGTAGATTCAGTTTTACAGTCCACAAAACAGAATATTTTCGAAGGTTTGTTGTAGTTTCCTGCAGAAATACATTTTGGGTGTCTTGTTAGATTTCTTTATGAACCTTTCTTACTTAAGACTccacacttcttttttttccagcctGGACCCCATTTTCCTATgcttatgtgtgtatgtgactgaGAACAACCATCTTTGAAATCAGTCCAGTATTGAGTGAGAACGCTGTGACATCCAGCCgtgaaccgggctgcaatgtaatcctgtaggtcaatttggtccactaaaagttctgtttttgccgctgacagact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61632 lncRNA upstream 323696 501349 ~ 501559 (+) True G46042
XR_005639373.1 lncRNA upstream 448782 375096 ~ 376473 (+) True LOC120559841
TU61601 lncRNA upstream 459988 358822 ~ 365267 (+) True G46014
TU61598 lncRNA upstream 484577 332243 ~ 340678 (+) True G46013
TU61593 lncRNA upstream 494847 323243 ~ 330408 (+) True G46011
TU61684 lncRNA downstream 14569 862191 ~ 871239 (+) True G46078
TU61746 lncRNA downstream 54817 902439 ~ 902678 (+) True G46132
TU61747 lncRNA downstream 55194 902816 ~ 903470 (+) True G46133
TU61748 lncRNA downstream 55936 903558 ~ 907128 (+) True G46134
TU61772 lncRNA downstream 70470 918092 ~ 918334 (+) True G46154
XM_039799261.1 mRNA upstream 4075 782791 ~ 821180 (+) True zgc:194282
XM_039799257.1 mRNA upstream 54199 558217 ~ 771056 (+) True LOC120558328
XM_039800007.1 mRNA downstream 91354 938976 ~ 986271 (+) False LOC120558777
XM_039800006.1 mRNA downstream 91354 938976 ~ 977210 (+) True LOC120558777
XM_039800008.1 mRNA downstream 107297 954919 ~ 977210 (+) False LOC120558777
XM_039800004.1 mRNA downstream 136547 984169 ~ 1010837 (+) True trim101
XM_039800005.1 mRNA downstream 136547 984169 ~ 1010837 (+) False trim101
TU61880 other downstream 388693 1236315 ~ 1245218 (+) True LOC120559832
TU61892 other downstream 429666 1277288 ~ 1284379 (+) True G46238
TU61894 other downstream 429666 1277288 ~ 1282739 (+) False G46238
TU62008 other downstream 675063 1522685 ~ 1523231 (+) True G46305
TU62038 other downstream 788326 1635948 ~ 1638170 (+) True G46328

Expression Profile