RNA id: XM_039801984.1


Basic Information

Item Value
RNA id XM_039801984.1
length 2804
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC120559902
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 31465768 ~ 31469785 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCACATGCAGCTACAGGAGCGGGACATGAGAACAGTCCGGTTTGCCGATGTGTACACTCACAGAGACTGGGAAGAGATCATTGGCAGGTTTCCACATGTGTGGATGAAGAAGCACTGTGGCAATCTAAAGCTGAGGGCTGATTACACACTAATTTTGGCTTGGCATGTTCCGATGTGACAAAGTGTAAAGCTGGTAACTGTTGGAGAAGAACAACACAGCAGAAGGCCGGAGAAACACACAACGTAACCAGAGGGAGCTCCTGAAGACGGACAGAACAGAGGAAAACTGTGTGAAAGCAGGAGAGTGAAGAGAGATATAttaaaggaaagagagaggcacTAGAGatattcagagagagagaagacagaagaAAAACGTGGCCAAGCATGAGAGAGGAGGAGCAGTCCAATGACGACCACCCTGAGGACGAGGGGGTTTCCAGCGAGGAGAACACGGGAAGGCCACCTTCTAACGCCTGTCCTGTTGTTGTAGCAACACCGGGGGTCACCAGGCGCAAACGGCAGACGGGCTCACAAACGGAGGATCACGTTACAACAGTTACTCCCACTACAGCAGCACACGACGGCAAGGTGAAGCCAGCGGAGGACATCCAGATTTACACGCTGACTGAAGCCAAAAGACTCAAGAAGAGTCCTCAACATCGGCCGCCTTCCTCAGGCCCATCCCTTTCTCCTGGCCCCGGCGCTAGTCCTGGAGATCTCTCGGCCCTTGAGGATCCACACGGCCAGCGGGTGATCGCCAACATTCGGGAGCGCCAGCGGACACAATCTCTGAACGACGCCTTCGCCTCGTTGCGTAAGATAATCCCAACGCTCCCCTCTGACAAACTGAGCAAGATCCAGACCCTTAAATTGGCATCGCGCTACATTGACTTTCTGTACCAGGTTCTGCAGAATGACGAGATGGACACTAAGCTGGCTGGATGTAACTACCTGGCCCACGAGAGACTGAGCTACGCCTTCTCTGTGTGGAGGATGGAGGGGGCCTGGTCGACCATGTCTGCTGGTCACTAGCCCTGCCTGAAAGCTAGGTTTGTCTTTTGACTGTTGCCCTAATGACAGGGAAATGTTCTCATTTGACACAGAGGGCTGAGGTCTGAATTGGGTCTACCAGTGGACTTTTTAACCCCTCAGATCATCGGTTTGCCTCGATGATAATAAAAAAGACTGACACTTGAGCATGAGCATTTGGACCAAGCTGATTTTTAAGCCACTATCCCTTTGTCAAGTTTTCATTGATGTCAAGCTACGTATCAGATGCATTCTTCTAATTCTATTGTTTTGCTTGCCAAAAGTAGCTTTTACTGCTCAAGTGTGCCAATGCTGGCATTCCAAGAAAAGTATCACAAAAGGGACATTGTGCTCAGTGTACGATTCCTGGCTTTTTAAAGGAATTTCTTCATGTTGTTTGTACTAGTAAGATCACAATGGAGGACAGGTGACAGATAAAGACACCCAGACATCATTTCAATCATTCAACAACCTGATGGTTGATGGTCGACCTGTCCTAAATGTTGCCTCCACATGACAGCCCGGCTTATTCTGCTAGAGACGTCTGAGCCCTCGGCTTTCTCGGGTCCTGAAGCTTGACCTCTGGTTTCATCCTTATCATCACCCTTGGTTTTATCACCACAACTGCCATCTCTATCATCATAACCTTTACTATCGTCATCATAGGTATGCAAACTTGAGACACATTTGAACTTCGTTTCTGTGCTGCTGAAGTGTATaaagttttgtgtaatgtacaaAGTGCAACAGCTAGAGATTGCGGAAGAGGGATTCGAGGAAAGTCAGAACTGGAAAAACTAAATTTGATTGTTTCAAGAGAGATTGGTCCTTTGACTTTTCTGTACCCTTTCAACTCTTACTTTTCCAAGACTCTGACGTATCATGAATCTCTGACCAACTCTGAACCTAAGCGACGGTGGAAAACGTAGCCGTCCATCCTGACTTCACTTTCTCCTCTTTATACCCAAACCGAGCCCCTTTGTTTCTTCtagtgccaaaaaaaaaaaaaaacttctcctCTTGAAATTCTTTCCTCTCATTCTGGCCCAAATTTGCCTGCGTTGCACGAAACCGTGATCCAGCTACAGCAAGCTGACGAGGAGGCGTAATGAAAACAAACGGTCTCAAAACGCCATGAATCATGTGTGTCACCATCAAAGGGGAGGCTGATGTGGCTCCCTGCTGGGCTCCCATAAACCACTGGAAGTGATGGAGGAGCTGCTGAATAAAGTGACTGTGATCTTCCCTGTACATCTCTGCTCCATGCCAACATTACTGCTACACTAATCATGTGGACTTTGATGCGAATGGAACTGAGAAAATGTATGTTTAAGAATATtaaaagacatattgatcaGGATGCAGATGGACATGGGGAAAGAAGACATTTCTGCACCAAGTAAACCAACAAAGAGCTCTGATTtattgaaaatacagaaaaatagaGAAATTGACAATACAAGTCAAGTTGGACCAGTATtttgtgtttagtttagtttttcttACTATTTTCCCAGAGGTATTATTCTAAGAAAACTTAGGCAGAGCAAGGCTTTGTTTTTGAGGAGTGTTTACttgaagtatatatatatatatatatatatatatatatatatatagtgtggtACTTTACAAATAAGGAGTGACACTGATACAGTATGTCTgattatactgtacatatcacAAGCAGAAAATTCCCTGGAGAATTAGATGTAGTGATGCATACAGCACATTAATCATTATTtgtctgaaaaataaaacttcaaaCTATT

Function

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09069 TWIST; twist

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72910 lncRNA downstream 115191 31347281 ~ 31350577 (-) True G54567
TU72888 lncRNA downstream 230294 31235247 ~ 31235474 (-) True G54549
TU72835 lncRNA downstream 367583 31097980 ~ 31098185 (-) True G54509
TU72834 lncRNA downstream 400796 31064741 ~ 31064972 (-) True G54508
TU72791 lncRNA downstream 576550 30889018 ~ 30889218 (-) True G54470
TU72945 lncRNA upstream 21771 31491556 ~ 31527860 (-) True G54599
TU72947 lncRNA upstream 28992 31498777 ~ 31500889 (-) True G54600
TU72956 lncRNA upstream 153336 31623121 ~ 31623330 (-) True G54609
TU72966 lncRNA upstream 471902 31941687 ~ 31944265 (-) True G54618
TU72978 lncRNA upstream 522564 31992349 ~ 31992551 (-) True G54629
XM_039800310.1 mRNA downstream 274412 31162519 ~ 31191356 (-) False itchb
XM_039800311.1 mRNA downstream 274910 31162519 ~ 31190858 (-) True itchb
XM_039801623.1 mRNA downstream 323894 31128228 ~ 31141874 (-) True e2f1
XM_039799270.1 mRNA downstream 340677 31113760 ~ 31125091 (-) True LOC120558334
XM_039801205.1 mRNA downstream 408192 30988074 ~ 31057576 (-) True ctnnbl1
XM_039800341.1 mRNA upstream 823157 32292942 ~ 32323275 (-) False LOC120558955
XM_039800343.1 mRNA upstream 823157 32292942 ~ 32321859 (-) False LOC120558955
XM_039800342.1 mRNA upstream 823157 32292942 ~ 32321823 (-) False LOC120558955
XM_039800340.1 mRNA upstream 823157 32292942 ~ 32321823 (-) False LOC120558955
XM_039800344.1 mRNA upstream 823157 32292942 ~ 32313484 (-) True LOC120558955
unassigned_transcript_235 other downstream 238637 31227060 ~ 31227131 (-) True trnaq-uug_1
XR_005639345.1 other downstream 1399827 30008242 ~ 30065941 (-) False tafa5l
TU73035 other upstream 837137 32306922 ~ 32312778 (-) False LOC120558955
TU73036 other upstream 847175 32316960 ~ 32321952 (-) False LOC120558955
TU73146 other upstream 1297572 32767357 ~ 32773486 (-) True G54756
TU73247 other upstream 1410408 32880193 ~ 32887290 (-) True G54834
TU73607 other upstream 2554233 34024018 ~ 34127495 (-) False G55124

Expression Profile