RNA id: XR_005639226.1


Basic Information

Item Value
RNA id XR_005639226.1
length 1508
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id LOC120559180
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 35432383 ~ 35448470 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agtacagccatggaagcagcaaacaaaccaacggcatcaacggagatagattctacccgacctaaaaaaaacctTGGCATGATTCTAACAGTTGCATGACCAGAGACGTTACAAAACCAGGGTGAATATTGGAGAtcagaaagatggagacagcctCGCCgcagccgacaacgGAACacaacttaaaggtgcagtctGTGAGGTGACCAATTGGAGTCAGAAAGACTCTGGCCACTGGGGCCAGAACAGGTCCAACACCTTCATGGTGATCCCGACGTGATGGTCAGAACCAGAACCCGAACCTGAAGCCGAACCAGAACTTTTTGGCGGACTTCAGAAAACTCAGACTCTACTCTCCAGAACCAACGGTGCACCGAGAAAaaggTCCAGGAGAGAGCTGAGGCACCTGCCCCAAAGAAACCCAGAGATCCCATCAAAGTAGGAGAGTGGGTGTGGCTACGAGTCCTAAAACGGAAGTGGATCGAGCCCAGGTGGACCGGACCACACCAGGTTATCAGCAACCACCTCACACTCGGTCAGGTTGGTCAAGAAAGGTACCAACTGGTATCACCAGACATTATGCCCCCGAGCCTCTGATCCACAAGGTGCAAGACCTTTGGACGAGGTAAGAGCTGATCTGCAATATGTGGCAGCCTCAGAACCCAGTGATGAGGGAATTTCACATCCCAAGGACTAAATTGGTAGTGACTGTAATAACCATAATAGTGCTAGGCTCATTGGGTTACATGTGGTGGGAGACACAGGAGGCAAAAACTGGCTCCCCTATCACTATAATCTGTGCAGAAATAGGCAAGACTACTTCAGTCTCGGTAGATATGTGCAGCATATTAGCCTGTGTAAGCCATAACCAGTATACTTGTCTCCAGTACCGCAAGAGGACAGCATATGTATGCACTGACCCCTGTAGTTCCTGGAGCCATGTATTTGCAAACTTTGGTGAGGATTGGGGTTATAACCCACCCAAAGCTACCCAGGGTGGTCTGAAGGGCCGACTCTCAATCACCCGCCagcaacatcatggccaccaatgTGCGCCAATAATAATCACTCTAAGAAACGCTCAAGCCTCAGATGATGGGGAATACTGGCTCGGTGTGGAGGTTATCAATGCTGATCCACTGGGAAAATTCAGGATACAGACTTTTGTTAGACCAACACCTGCACCTACCGTCCCGGCTAATATAACAATGACACCTGCCAGTGAGTATCATTGCATCCCAAAACATGGATGAGGTTGTTAAAGAATTCAGTACCCATCATCACAACTACTGGAGGAAGCGTGCTACTGCAAACAAACCCAAGTTCGACTCCATCAACAACCCATTTGGTTCGTAAAGAGCTAGCTGAAAACTCTGGTGTAGAGCCAAACCCTATAACTGACTGGGTCCATGGTATGTTTGGCAAGTGGAAAGTTATGATCATGTCCACGTTGGTCTCCATAGCTGTGTTCACGGGCATTCTGGTGTGCTGTGGTTTTTGTGCTATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74123 lncRNA downstream 14584 35415007 ~ 35417799 (-) True G55496
TU74004 lncRNA downstream 185836 35245657 ~ 35246547 (-) True G55409
TU73995 lncRNA downstream 215764 35214088 ~ 35216619 (-) True G55400
TU73989 lncRNA downstream 255326 35176798 ~ 35177057 (-) True G55396
TU73966 lncRNA downstream 281760 35110380 ~ 35150623 (-) True G55376
TU74158 lncRNA upstream 37262 35485732 ~ 35634395 (-) True G55511
TU74137 lncRNA upstream 42633 35491103 ~ 35576323 (-) False G55505
TU74161 lncRNA upstream 46080 35494550 ~ 35503023 (-) True G55514
TU74151 lncRNA upstream 81544 35530014 ~ 35549671 (-) True G55507
XR_005639227.1 lncRNA upstream 105257 35553727 ~ 35555568 (-) True LOC120559181
XM_039800461.1 mRNA downstream 48154 35311194 ~ 35384229 (-) True flna
XM_039800713.1 mRNA downstream 128368 35298496 ~ 35304015 (-) True emd
XM_039800711.1 mRNA downstream 145173 35286360 ~ 35287210 (-) True mrpl49
XM_039800701.1 mRNA downstream 154529 35269900 ~ 35277854 (-) False LOC120559165
XM_039800693.1 mRNA upstream 426152 35874622 ~ 35898736 (-) False si:ch73-70k4.1
XM_039800694.1 mRNA upstream 437770 35886240 ~ 35898736 (-) False si:ch73-70k4.1
XM_039800695.1 mRNA upstream 438631 35887101 ~ 35898736 (-) False si:ch73-70k4.1
XM_039800692.1 mRNA upstream 438631 35887101 ~ 35898736 (-) False si:ch73-70k4.1
XM_039801534.1 mRNA upstream 804706 36253176 ~ 36270025 (-) False LOC120559648
TU74116 other downstream 22617 35404604 ~ 35409766 (-) True G55492
XR_005639223.1 other downstream 154529 35269898 ~ 35277854 (-) True LOC120559165
XR_005639224.1 other downstream 154529 35269900 ~ 35277854 (-) False LOC120559165
XR_005639222.1 other downstream 154529 35269900 ~ 35277854 (-) False LOC120559165
TU73658 other downstream 1141496 34290406 ~ 34290887 (-) False ntsr1
XR_005639221.1 other upstream 438631 35887101 ~ 35898736 (-) False si:ch73-70k4.1
XR_005639240.1 other upstream 1110919 36559389 ~ 36559959 (-) False LOC120559361
TU75206 other upstream 1233429 36681899 ~ 36724209 (-) True G56160
XR_005639341.1 other upstream 1278126 36726596 ~ 36744132 (-) False LOC120559655
TU75262 other upstream 1436395 36884865 ~ 36895490 (-) False rhoaa

Expression Profile