RNA id: XR_005639259.1


Basic Information

Item Value
RNA id XR_005639259.1
length 400
lncRNA type inter_gene
GC content 0.48
exon number 4
gene id LOC120559421
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 1550170 ~ 1551968 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gaaaaacacagaagaagaaaagtttgaacAACGCAGCAAGGCGGGAAGCAGCAGACAGTAGGGTTGCAGAAACTACCTACGCAGCAGAAATCAGGCTCACTGGACTTActTTTCAAGAAGTTAAGGAAGATAACTGGAGATGTGATAACGATACCAGactgagaagaaACTGCCCCTCATTAGAAAGATGATGGAGACCACATTTCCCCTACGCCGACAGACCATAGTGATGTCCTGCCCACCAGTGAACGACCTCATGGACCTCTGGCCTGCTCTCAAAATAGAGTCTGAGTTGTATGCAGAGTTCCAGCGGATTACAAATCAGAACCTGCCCAACACGTGCTATGCTGAGCTTGACCGCTATCTTCCTCGACTGATGACCTTATTCAgacggaaggca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639271.1 lncRNA upstream 28843 1499504 ~ 1521327 (+) True LOC120559430
TU61952 lncRNA upstream 77788 1472156 ~ 1472382 (+) True G46274
TU61951 lncRNA upstream 78025 1471913 ~ 1472145 (+) True G46273
TU61935 lncRNA upstream 181379 1367637 ~ 1368791 (+) True G46259
TU61933 lncRNA upstream 182867 1365120 ~ 1367303 (+) True G46258
TU62033 lncRNA downstream 77564 1629532 ~ 1630337 (+) True G46325
TU62040 lncRNA downstream 86427 1638395 ~ 1658925 (+) True G46329
TU62057 lncRNA downstream 126369 1678337 ~ 1678602 (+) True G46339
TU62058 lncRNA downstream 136119 1688087 ~ 1688318 (+) True G46340
XR_005639252.1 lncRNA downstream 144274 1696242 ~ 1697615 (+) True LOC120559418
XM_039799642.1 mRNA upstream 497160 1048972 ~ 1053010 (+) True adrm1
XM_039799637.1 mRNA upstream 504931 1015388 ~ 1045239 (+) False LOC120558589
XM_039799636.1 mRNA upstream 504931 1015389 ~ 1045239 (+) True LOC120558589
XM_039800004.1 mRNA upstream 539333 984169 ~ 1010837 (+) True trim101
XM_039799490.1 mRNA downstream 16327 1568295 ~ 1608445 (+) True LOC120558473
XM_039801109.1 mRNA downstream 659208 2211176 ~ 2232622 (+) False LOC120559409
XM_039801110.1 mRNA downstream 659208 2211176 ~ 2232622 (+) False LOC120559409
XM_039801108.1 mRNA downstream 659208 2211176 ~ 2232329 (+) False LOC120559409
XM_039799519.1 mRNA downstream 785368 2337336 ~ 2339429 (+) True LOC120558501
TU62008 other upstream 26939 1522685 ~ 1523231 (+) True G46305
TU61892 other upstream 265791 1277288 ~ 1284379 (+) True G46238
TU61894 other upstream 267431 1277288 ~ 1282739 (+) False G46238
TU61880 other upstream 304952 1236315 ~ 1245218 (+) True LOC120559832
TU61671 other upstream 649874 793902 ~ 900296 (+) True G46066
TU62038 other downstream 83980 1635948 ~ 1638170 (+) True G46328
TU62302 other downstream 837978 2389946 ~ 2390512 (+) True G46530
TU62381 other downstream 1193930 2745898 ~ 2770453 (+) True G46574
XR_005639249.1 other downstream 1727393 3279361 ~ 3283170 (+) False LOC120559414
XR_005639245.1 other downstream 1953340 3505308 ~ 3512484 (+) False LOC120559404

Expression Profile