RNA id: XR_005639359.1


Basic Information

Item Value
RNA id XR_005639359.1
length 2263
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id LOC120559738
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 30496040 ~ 30500331 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgcaggaGGGAGAGCAAGTGGGCGGGGGCCTTTTAATCTGGGATTTGGACGAGCGTGAGCAGGCCTGATACCAGCACCCGTCAATGCTATCAGTCGTCCCCCTACATTCCCTCCTTCCCCACCTCAGACGAATGTGACAAGCGCTGGCAGACTGGTCCAAAAACCCTCTGCTCTCCTCCCTCAGCCTCACCTTCTCTCCCCTTTGTACCCTAAGAGATCATGACTCCAGGAGCAGAAGTGACTAAGGGCTTTCCAAGAATAGGATTCCCTTTGACAACCACCAGGCGCCCCATTTCACTGCATCTGGCCTTGGGcagcgagagagaaagacagagacaagacaAAGAGAAGGGGGTTTCAAATAGCCTGGATTTATCTGACAAGACGTCGACAGGAAAGAAGACAACACACTGGATGAACTGGGGGAGAGACAGGCAGCTGGGAGCTGCAGGTTAGGCCTTGGGCTGGTTGAGGGGAAACAGGCCCAGTGTGCATCCAGCCACCACTCTATCCTCTTACATAATGTCTCAAGTTCAATATAGCCCTGGTTGGCTATTTAAAGGATGTCCGTCTAGGCCAGCTGACAAAAAGGTGATATACTTAGTAGCCACCGCGCAGCATGAAAGCCTCGGCTAGGGCTATATTGGTCACAGACAAGCCCGGGGTGTGGATTTTGGTAATGTTGCAGATATTTTTAGCCCGGCTGATGATCCAGGGTATTTACATGAGGTGCAAAACTTGCACACCCCCCATAGCTGGATGCCTAACTTCTCTGTGTAGCACCAGGCAGTCAGCTTAGTAATATTGGCTAAATGACTAACTTAGGCAATCACTTTGCACGTGCATGATGTTTGTTTTCAACACTTGCACATACTAAATCCAGCCAAAGCTGACTAAATTATTGACAAAAATGCTAGTGGTGATACGACAAATGGTCAAAAGCTTTCAGGGTAGTCAGGAAGTTCTTTAATCATGCAAAAACAACTAATAGCACAGGGTATCCATAGTTTGTGGCTTTTTGTATTTACATGGAGTAAACAGTACTTGTCAAACACAGAGTAAAAATGGCTCTGGGCattaatggttaataaataACTACAATGTTTTTTCATCCAGCCTTTTTCCAATAGCCAACATGGAAACCAAATTCTTTGGAAGGCAGAAACCAGTTGATACATACCGGACATCTTGCCTGAAACAAACTGAGCATACAGAGTAATTTCTCCAAAAGTTCTTCGCAATTTTGCATTACTTCAATGCATGTATCATGTAAATAATGGAATAATCCCTTTTCAATTTGGATTAAATAATGTACTGGCAGTAGTCTGGTGTTTAAGATAAACTAATGATCATCATATTTGCATATTTTGAACAATGTCTAATGTGTTATATGATCCTTTTCCACTCAAAAAGCATTCAAAACAAGCGTCTTTAATAAAACAGTTTCTAAGTGACAGCAAATCCCAGATTCAGTTAGGGATTTAGTCCAGTACCCATTCATCATCACAGGAAAATGTTACAGAGCCCAATCTTATTATTGAAAGCAAATGTATGATACTTTGCTAAGATTTTACGCATCTCATTTTACTATGCAAAACTAAAGACATAGTTTGAATGTAGTTCATGTTTAAGACCGTAGGTCTTACTggaaaaataacaaatgcaaAGAATGAATTTGCATTTCCGCATTTGAAATCatcagaaaataaatatattgtgTTTTGGCTGCCAGTTAAGGCTATACACTATTTGAAGATGACTCTTGTATCTTGTAATCCACATTTGCTATTAGTTTCTGTATCTAACAGACTGCAggataactttatttatttataacttttttatttttataattgcaATACTCATAAGAACGTTTTAGACAAAGTACCTCTTTCTGTAACGAACTTGCTTGTTTATATAGGCGTCAACCTGTCGGTAAAGAGAAGTTAAATGGTAAAATTTTAGTTAGTTGGTACATTGTACCTCTTTTCCAGCCTACTCTTTTCACCGGCCAAAGATAGCAATAGATAATTGCACTTCTCAGTGAAGTGAGATGAGCGTGACTTCGATAGTCAAAGTCATTTAACAGAGAAGACCCAGAAACAATGGCAGGTGTGGCACTATTAACCTGATCAAAGCTGAGATTGGATTTACACAGCTCAATAAAAATGTAGTGTTATTATGTTAAACATCTAAACAAACTATTGACATACACCTGGTATAGCATCTCCTTTCTACCATTAAAAGCACTTTGTCTTGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72537 lncRNA downstream 480723 30008037 ~ 30015317 (-) False tafa5l
TU72525 lncRNA downstream 593320 29900560 ~ 29902720 (-) True G54272
TU72424 lncRNA downstream 673223 29822520 ~ 29822817 (-) True G54189
TU72420 lncRNA downstream 680590 29814350 ~ 29815450 (-) True G54185
XR_005639328.1 lncRNA downstream 817236 29676371 ~ 29678804 (-) True LOC120559594
XR_005639342.1 lncRNA upstream 118935 30619266 ~ 30619890 (-) True LOC120559660
TU72708 lncRNA upstream 133601 30633932 ~ 30635350 (-) True G54407
TU72718 lncRNA upstream 155339 30655670 ~ 30706761 (-) False G54414
TU72715 lncRNA upstream 203955 30704286 ~ 30706761 (-) True G54414
TU72754 lncRNA upstream 284762 30785093 ~ 30785797 (-) True G54444
XM_039799787.1 mRNA downstream 296200 30103231 ~ 30199840 (-) True mtor
XM_039801583.1 mRNA downstream 430100 30008242 ~ 30065940 (-) False tafa5l
XM_039801582.1 mRNA downstream 430101 30008242 ~ 30065939 (-) False tafa5l
XM_039801700.1 mRNA downstream 536269 29947906 ~ 29959771 (-) True mapk13
XM_039800361.1 mRNA downstream 549807 29928188 ~ 29946233 (-) False brpf3b
XM_039801722.1 mRNA upstream 41170 30541501 ~ 30547082 (-) True LOC120559739
XM_039801727.1 mRNA upstream 63229 30563560 ~ 30585652 (-) False dennd2c
XM_039801724.1 mRNA upstream 63229 30563560 ~ 30585652 (-) False dennd2c
XM_039801725.1 mRNA upstream 63229 30563560 ~ 30585652 (-) False dennd2c
XM_039801726.1 mRNA upstream 63229 30563560 ~ 30585652 (-) True dennd2c
TU72538 other downstream 423341 29971196 ~ 30072699 (-) False tafa5l
XR_005639345.1 other downstream 430099 30008242 ~ 30065941 (-) False tafa5l
XR_005639344.1 other downstream 430099 30008242 ~ 30065941 (-) True tafa5l
XR_005639347.1 other downstream 430100 30008242 ~ 30065940 (-) False tafa5l
XR_005639346.1 other downstream 430100 30008242 ~ 30065940 (-) False tafa5l
unassigned_transcript_235 other upstream 726729 31227060 ~ 31227131 (-) True trnaq-uug_1
TU73035 other upstream 1806591 32306922 ~ 32312778 (-) False LOC120558955
TU73036 other upstream 1816629 32316960 ~ 32321952 (-) False LOC120558955
TU73146 other upstream 2267026 32767357 ~ 32773486 (-) True G54756
TU73247 other upstream 2379862 32880193 ~ 32887290 (-) True G54834

Expression Profile