RNA id: XR_005639373.1


Basic Information

Item Value
RNA id XR_005639373.1
length 524
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id LOC120559841
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 375096 ~ 376473 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCATCTGGATCGTCAAAGAGGAACAAGGAGCTGGTTTAGTTCAGTGTTGAGCCAACGGTCCTCCTTCTTAATAACAGTGGCAGCCATATGCTTTTCATTGGATTTCAAAGAGTGCACTTTCATTTCAAgtggaaaaactaatatttccaTCGACTGGAACAGGAtgctgttgtttaaaaaaaGGTGTAAGGATGGGGAGGAATGGAAACGCAACGTACGTGTTCCTCGGTGATGAACCGGACGTCACCAACGTGGATGATCTTCCCATCGTGGCCAACAGTCGCCACGGAAATCGAATCCTCGCAAACCTCTGAGGCAACATATTTCTCTACTTTAAAGCCGAGATCCTTCAGCACCAGGGATGGACGGATAAACCCGGTGAGGCTCCTACAAAgaaaaaccaacaacaatgtaGGAACTGAGTCAGTGGGACTCCTCAGAAAGGGAAAGGTGTATTTGTAtgatgtattgtgtgtatttgtgttggaCTTCTGTCTGCAAAGCAAATTGCCCCTCAGGTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61601 lncRNA upstream 9829 358822 ~ 365267 (+) True G46014
TU61598 lncRNA upstream 34418 332243 ~ 340678 (+) True G46013
TU61593 lncRNA upstream 44688 323243 ~ 330408 (+) True G46011
TU61494 lncRNA upstream 145550 225945 ~ 229546 (+) True G45931
TU61507 lncRNA upstream 151865 222544 ~ 223231 (+) True G45943
TU61632 lncRNA downstream 124876 501349 ~ 501559 (+) True G46042
TU61684 lncRNA downstream 485718 862191 ~ 871239 (+) True G46078
TU61746 lncRNA downstream 525966 902439 ~ 902678 (+) True G46132
TU61747 lncRNA downstream 526343 902816 ~ 903470 (+) True G46133
TU61748 lncRNA downstream 527085 903558 ~ 907128 (+) True G46134
XM_039801939.1 mRNA upstream 165359 74750 ~ 209737 (+) False vps13d
XM_039801400.1 mRNA downstream 99991 476464 ~ 485895 (+) False commd7
XM_039801399.1 mRNA downstream 99993 476466 ~ 485895 (+) True commd7
XM_039799257.1 mRNA downstream 181744 558217 ~ 771056 (+) True LOC120558328
XM_039799258.1 mRNA downstream 181744 558217 ~ 771056 (+) False LOC120558328
XM_039799259.1 mRNA downstream 181744 558217 ~ 771056 (+) False LOC120558328
TU61671 other downstream 417429 793902 ~ 900296 (+) True G46066
TU61880 other downstream 859842 1236315 ~ 1245218 (+) True LOC120559832
TU61892 other downstream 900815 1277288 ~ 1284379 (+) True G46238
TU61894 other downstream 900815 1277288 ~ 1282739 (+) False G46238
TU62008 other downstream 1146212 1522685 ~ 1523231 (+) True G46305

Expression Profile