RNA id: TU77970


Basic Information

Item Value
RNA id TU77970
length 4359
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G57994
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 121847 ~ 126263 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCAGCCCTCCCCCTCCGCCTCTCTCACCTCTTCTGGTGGGGCCCATCCCTCTGCCCCGAGCAGCACCACTACGTTCCCCGCGCAGGCAGCTCAAACCTAATGTTTTCACACCATGCAAAATCAATAACCATCTGTTAGCAATTTTCAGGAGAAGCCAAAATAGCATACAATAACCGATTCAATTCAATAACTTatcaaatattaataatttgTCGAGACACGATCCCCATCTGGCGTCTGGAAATAAGTTCATCTGATAGGCCTTTTACAAGGTAGGCTACGTCAATCAATCAAGCAGTTAATCAGTCACTTCATTTTATATAATAATCTTACAATTTAGCTTGGTTTTTGTACTGAAGAGCAATGACCTAATTGGCGATCGTGAACAAGTTATAGGCTAATAATGATAACCAGCACACAGTGGATTGGATCAGTTTTTGTCCGTTACTAAAATAAATGTGATCATGTAAACAAAGCGGACAGATGCAGACCTGTTGGTCAGGTGGCACCAAACTGCCGCCCTCTACTTTTCTCTTGTGATTTGATCTTTTAATCGCCACGACGACTTATACTTTTCAGCGTTGCATTAGTTTACCTGCGATTTCGTTAGAAACGGTGGATTCAGCTCAGGTGCGGAACACGTCTGGACATTTCAACTCCTCTCGTTTTACATCACAATCACTATATTAAACGGCTGTTAAAAATGCACGACTGTCAGATGCGTCACATTTCGTCTCTTATTTTGTCGCCAGCtgacaataaaaaagaaagtttaGGCTACTGTCAAACTGAAATGTGTTGCAGCCAAGCGTGCCTCATCAGAAATATTACCAATTAGATGAGTTGCCTTGAAATGACAACGTAATTAGATCGACAGTGAATTGCAAACTGTTTGAAGATTAGATTAAACGTCAGCGGGCAGCTCAGGCGATGTGTGAATTGAATTCTCAAGTCTGGGGATTTATTTCCATGATAAAAGGACAAGCAAACGCACCGGtttgaaaccaaaacaaaaggAAACCTCACATTGACACCATCATAGTGCTAACAATGTCTATTTCTACACCCTTTTCATTGAGCCTGTTGGTTTAATACATGTTCATTTAACTGCCGATTGCATTACTTACCGATAGGAGTTAATGCAGTGCAATTTAAAAGGCAAGAAATTAGAGAATTATATTATCTATATATAGCCTATTCAAACTAGGATTGTCCAACAATAAAACACCCTGCTACAAAAAACTTAGGAAAGTTGAGAAAAGGATTGTTAACACCCAACCTAAAGAAATAATTTTGCATTATGGAAATGTAACTTTAGGCCTACTGAGCGCAAACATCTGCCAAACTATTTGGCAAActattcacaaaatattttatgtatgtatatgtatatgtatatgtatgccTATTTTTCAACCTGCGATGAGACTCTGCCAGCTCAAGTGAATTGCCTTCAGTGAAACAAAGAGTGGACAAGTCTGAGCAGCGCTGGACATTATTTATAGTTAGGATACTCTGCCTAAAAACAGGCCACCTAGTGGTGATAACATGGAACTACAACAGGAATCCTCAGTAGATTATTACACTGTAAATGCACTGGCTTTGAGAAATGTCTTTGGTGAAAGGAAGGACTCTCTGGATCACAGCTTATGAGCCTGACTGGTTATTGTGCTGTACATAGAGCCAGCTGAGAGGTGTCTAACATGGCAGAGACTTATTCTTCTTTTAACAAGGAGgagatgtttgtgtgttaaaaaaaatgaaagaaagttGTGATTatgataaaagaaaaatgaaccGTGCCTATTCTACTTGTGATTTATCCCTGatcttagacacacacacacacacacacacacacacagaccaggtGGGTCCCACCTCCACCTCATTCCCCAGGGAGAGGATTGGTCGCCTGCTGCTTGCAGGCCCGGTATCCCTTAGACAAATAAATTagcaaatttaaaaaataaaggcaAGCAGATAAGAAACAGATGGTCAGATTAGACCATCGTCTTGGATATCTTCAGAAGACCTCCTCACTTGTTAATCAGAGCCTTTATAGGTGCCAAGATAAAGTCCTGCTGCTGATATTGAGGTCAGTTTTCAGAGGGGTGGGAAGATGATCACGAGCTGGAAGGGAGGATATACtttcaaaagaaaatacaagtaaaatatataaatgccGGTTTTGACCAGAAGTTACGGCATGGTCATATTTCCTTTTCATCTTATATCACCATTGCTACCATGCCACCTATAGCTGCATTGTGTCACAGGGTTTTCTCTCTCATGCCTGGACCACACATGTGTCCCTGCCACAGCTGTGACTCCTTTTGATCCGCTGCTGTAATGACCCTGCTGCTGTGATGTGACTGCTTCTGTCTCACTCTGAAcattagcttcatttttggtcgagGATATCGTGGATGCAGCTATTCAATGGAAAGGTCCTGCTATCGTATGATTTGTAGCAGCTGATATTCTTCTGAAAAGAGCGAGTTGCGTGATATCCATCTTTACAGAGTTCACTGGAGTGAATTGACAGGCGACTTGGGGGACATTTGCAATGGCCGCACGTCAGCTCCAGTCTGGTCAGAGGGGGAGATAAGTGATTGAAGGTGTAATCTGTGACCTGGGGTTTGTTTGAAGTGTAAAAAGTTGATGGCAGCACACATATCCCCCTCTCCCTTCCTTGATTTGTGGCCAATACAGCAGACCCCAGGCCCCACAAATCATGCTGAGGCACCCGGGGaccagggccacagggggtctAGAGTCACACTGTGGTGTTATTTCAGAGCCAGTGTTGGTCCCTAAGTGCACACAGTCcctgctaaaaaaacaaacaaacactttatgtggaataaaaataataattcctatCGGACCCTGatttgtgtttccatccaatCTTATAACTAACTGTGAGCCACAGCCGCGTACCTTTCGCGTCGGCCTGCTAAGTGCCGACTCTGCTACGTGAGACGACATCGCACTCCAGTGCAGTGAAGCCAGTGCCACACCCTCAGATGTGCGAGGGCACAGCTCCTGCTGAGGGGTTTGCTAATTGCCAGAGCATCTTGTCAAACTGTAGGTTTTCTCAGGACCTCTGGCTGTTGTGTGTCCGCTACTCCTGTGTGACAATTTGCTTCTGCATGTGTGCAGTTTCAGTgcaataagaaattaaacatccCAAAAAAGCACAAAGGTGCTCATATTCTCATAGTGTGACATGGGAAGTTCTGTTAATAACTTCCAGAGGGCattgtgctgtgctgtgtgccTCATTAAATCCTTGAGCTTGAGGTCAGCCATATCACAGCTATCTTTTCTCCACATCTGCCATACTTGACCTCAGCATTGAACTGAATAGAGAATTCCACCCAATCATTGGAAATGTTTGCGCTGATAAGGCTGCTCTATTGTTTCATTTTTGTCGCTCTAAGCAATTTTCTCCTAATGAGCAATGCACCTGTAGTTAGagtgctttttaaaatgtcatcatGTATCCCAGATTAGGTTGTAACAACGGATGTTAATTCTTATTTACTGTACTGTCTGCTGTACTATTGTTGGGTACATTGTTTAGGGACTGTTGAAAACTTATTGGAGTTGGCAGACATTTCACCTATGCCTTGAATAAGAggaaaacatactatactgtatttctatttctataaTACAACAGTACACAATTGGAACAACAATTTTCAGTGTTAATAACTAACGTAAGAAAACCACTAATAAAACCATAATATGTTTCAGGACCCAACATTTTCACATATATACCGACTACTAAAATTATGACAGGATTGTTGTCCACTGCATATAACCAAATGCACCTTTTTGACCTGTGGCACACAGAAATGCTATTTTTATGTGAATATTTTGAAGAATTTTGCAATAAATCTTagaagattaaaagaaaatgtaaaatgtatgaCCCTCTGCTGCTCTCCCAAAAAATGTGAATATCCCTCAACAAAAAAAGGAACCCTCTCTGTTTTCTGCCCAGCCTTTTTGGACAGTCACAAGAAACTTTTCCCTTAAAGAGGAACTCCAccgattttacacatcaaatcTGTTCATAGGTGTTGAGGAGTGCTactgcatatttaaaaaaaacttgtactGTATGGCTTTTGctgcctcaagtgatgtcagttagaaagaagtgagctcaccagacctctgtagccaactcctcatctctgcttgaggctgGTGGTTCAAGACTAAATTAGCCTCAACTAGCAACTAATCCACCCAAGAATCTCAGAGCTCTATGAAAAATCACTGAATTGTCAGCTGccgagttgcattatgggtaatGAAGgcgccaggttttgacaagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639491.1 lncRNA upstream 11786 108566 ~ 110061 (+) True LOC120560560
TU77918 lncRNA upstream 104930 15528 ~ 16917 (+) False G57961
TU77979 lncRNA downstream 39755 166018 ~ 603180 (+) True G57999
TU77996 lncRNA downstream 83018 209281 ~ 210676 (+) True G58011
XR_005639514.1 lncRNA downstream 84493 210756 ~ 212383 (+) False LOC120560799
XR_005639515.1 lncRNA downstream 84493 210756 ~ 212383 (+) False LOC120560799
TU78015 lncRNA downstream 119628 245891 ~ 252072 (+) True G58021
XM_039803187.1 mRNA upstream 22343 79632 ~ 99504 (+) False LOC120560558
XM_039802738.1 mRNA downstream 57414 183677 ~ 187344 (+) True ccdc157
XM_039802739.1 mRNA downstream 57414 183677 ~ 185512 (+) False ccdc157
XM_039802740.1 mRNA downstream 58817 185080 ~ 187344 (+) False ccdc157
XM_039803649.1 mRNA downstream 86773 213036 ~ 216499 (+) True LOC120560800
XM_039804134.1 mRNA downstream 96878 223141 ~ 242641 (+) False LOC120561159
TU78000 other downstream 84479 210742 ~ 212370 (+) True LOC120560799
TU78001 other downstream 84479 210742 ~ 212370 (+) False LOC120560799
TU78941 other downstream 2752138 2878401 ~ 2879744 (+) False lman2lb
TU79382 other downstream 3991016 4117279 ~ 4117631 (+) True G59086
TU79482 other downstream 4297878 4424141 ~ 4429981 (+) True G59172

Expression Profile