RNA id: TU78181


Basic Information

Item Value
RNA id TU78181
length 1283
lncRNA type sense_over
GC content 0.37
exon number 1
gene id lmx1bb
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 789405 ~ 837861 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAGTAGGATTGTCACAGAGGGATGTTCTTTGTTCACTTAAAGCAAAACAAGTAGATATTGAAGCCACTGATTACACACCCTCAAAACCAAATAACAGTGAATTTATACAGTGCATGATCAATTGTAAACTAAAACTTTTTGTAAGCCCCCTTGGTTAAGATGTGGTGTTTGGACTGTTTCTTCTTTCCACTACATGGATTTCCATGTTCACCGTTAGCATTTTGATCACTTTCAATAGGTTTAGATATTGTGTTAATAGTAAATAGGTGCAGCATGTCTGCAAGAGTGACTGTACAGTTGTGTATGTATGAGAGTTTGTGGTGAGAAAGAATTGTTTCGAGGAGAAAAAAAGGCGGAGAATTTGTTGGACAAGTAGGATCAGTAAAGTGTAAATACTTTCCCCAGGCAAATTGGATGTGCATGTTACAAAATGGAAAGCATTCTATTTATTTAACTATAACAGGCTCTTGAAGGTGCATATTAAAACTGAAAAGCTTTATTTAAAAAGGAgagcattttttgttgttgttgagcaaTTAGCGAGTTCATGAGTGTCACAGCTCATCTGTATGCCTTTTTAATATGAAGATTAACCCTtttgtttcgttttttttttcttcagccaaGCTGTAAATGAGCAATGTTGCTATTTATTTCGTACAGACCATAAACCTTTTGTTGTCATTGTCATATGCGCATTCTCAAAATGTTAAAGTTGCTAATTGACCAAAGTTGACTGGTTTGATGAATAAACAATGTCTTTCTCCtgataatattaaataaatgccaTTCAGTGATCATTCACGTGGTAAACATGTCGAGTCCCAAATTGTCACCTGCTTCAGTGAAAAGCCTACAGCTCATTACAGGGGGATTTGTTTAGCCAAGTTAGCGGCGTGGCTTAAGGGTCTAACGATGTCGgcctattggatggattgctacCAAATCTGGTACATCCATTCACTTTCCACAGAGGATTtgatcctaatgactttggttaTCTCCTGACTTTTCTTCTTACACCGATGCTTTCAAAGACATTCCCATCGACGGTACCATGTGTGTAGTGCTACTCTAAGTTAGCAtgaactaagatggtgaacgtGGTAAACATACCTACTAGAAaacagcatgttagcattgtcgtTATTAGCTGGGCTCTGGTTTCAGGGTTGCCATgggtgcacgtgtgtgtgcattgACTAGCAAATCAGAATGatatttaaaaaactgtaaataaaaaatttaaaaatgtgagACAGCTACTCTGAACACTAAAACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77979 lncRNA upstream 233399 166018 ~ 603180 (+) True G57999
TU78074 lncRNA upstream 264047 541890 ~ 572532 (+) True G58057
TU78020 lncRNA upstream 576882 257568 ~ 259697 (+) True G58024
TU78015 lncRNA upstream 584507 245891 ~ 252072 (+) True G58021
XR_005639514.1 lncRNA upstream 624196 210756 ~ 212383 (+) False LOC120560799
TU78179 lncRNA downstream 41393 879254 ~ 882251 (+) True G58151
TU78184 lncRNA downstream 54236 892097 ~ 892439 (+) True G58156
TU78185 lncRNA downstream 61032 898893 ~ 899506 (+) True G58157
TU78257 lncRNA downstream 215154 1053015 ~ 1053413 (+) True G58209
TU78270 lncRNA downstream 223168 1061029 ~ 1062465 (+) True G58215
XM_039802122.1 mRNA upstream 63366 732697 ~ 773213 (+) True mvb12bb
XM_039804219.1 mRNA upstream 242774 532813 ~ 593805 (+) True pbx3b
XM_039804227.1 mRNA upstream 242774 532813 ~ 593805 (+) False pbx3b
XM_039804221.1 mRNA upstream 242774 532813 ~ 593805 (+) False pbx3b
XM_039804220.1 mRNA upstream 242774 532813 ~ 593805 (+) False pbx3b
XM_039803888.1 mRNA downstream 32170 870031 ~ 877817 (+) True zbtb34
XM_039803459.1 mRNA downstream 191396 1029257 ~ 1052283 (+) False adamts13
XM_039803458.1 mRNA downstream 191397 1029258 ~ 1052283 (+) True adamts13
XM_039802986.1 mRNA downstream 268103 1105964 ~ 1127084 (+) True LOC120560446
XM_039804456.1 mRNA downstream 319609 1157470 ~ 1329623 (+) True si:dkeyp-14d3.1
TU78000 other upstream 624209 210742 ~ 212370 (+) True LOC120560799
TU78941 other downstream 2040540 2878401 ~ 2879744 (+) False lman2lb
TU79382 other downstream 3279418 4117279 ~ 4117631 (+) True G59086
TU79482 other downstream 3586280 4424141 ~ 4429981 (+) True G59172
unassigned_transcript_241 other downstream 3594310 4432171 ~ 4432253 (+) True trnal-aag_1
unassigned_transcript_242 other downstream 3594807 4432668 ~ 4432739 (+) True trnaq-uug_2

Expression Profile