RNA id: TU78289


Basic Information

Item Value
RNA id TU78289
length 1344
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G58230
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 1079609 ~ 1083228 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACACAACATGTTTTATTGGTCCACATTCATGTTCGGCAAGAAGATGCACAAATTCTACAAATACACCACAATCATGTTGAGGAGATGAAATATAGATGGAGCCTACTGCGCTGGAACAACTTTAATAGGCTGCACTGTGAATAACTACATCTTTGACCCTGACATCTGAGCTGCTTTTGAGCTGCAAGAGCCACATTGCCATCTGGTGGAATTTATGTTGCATTGCAGCTTCCTTTACACATTGATATGGCACACAACTGTACAGCAGTTTAATCCTAACAGTAAAAACTGAGTTACAACTCACAGGCTAATCTGTACAGACAAAACTTTAATCTCAAAgtaaacattcacacatttGTCTTCTTTTGGCACAGACAGCAACAATAAGAATTAAACAATGCCACAATGGTTCGTTTTAGGTTCATTTTTGTACAACTGCTCAAGACATTTTATACAAATTATTACAGACCTGTTCAGTCTTTTATTTAGATTTCGAAAGGAAAAGAACTAGACTTAAACTagcttatatacacacacatcagcgCTGGTTGTGTTGGGGCTTGAAACAGTCCCAGCCAGGCTTAGGAGTATACGTGTGCTCAGGAAGAATAAAGTCTTTCAGTCTGTCTGGTAACGGCAAGGCTTTAACTTTGTCTTCCAGGGGCCAGGGCTGTAAGTGACTCCTTATGAATGCCCTACAAAGGCAGCGCAGAGCAGGAGGGTTCGCTTCGTGCTCTGCTACGTGGTCGTGCAGGTCTACCAGAGCCTGAGCATAAGGGTGCGGGTCCTGACCGGGCACGGGGAGCTCCAGCCTGAGAGGCAGATGCGGTGCGGGGTCGTCCACCCTCGCCAAGTCAAGCAAGACCTCAGCCTGCTCCAGCAGCTCCGAGGCGCGACTTTGACCAGAGCACTGCTGCAGGGCTGTTTGCAGCCGCTGGAAAAGGAGGCTGTAAAACGACCAACAGGAGTCGCCGTGGTAGGAGCAAACCAAAGACGCTCCACTCTGGATTAGGAGCACAGCCAGAGGGAAGAGCAGGTCAAAATGCTCCAGGCTCGTCTGTGTCAGGGAGGGCTCGCCGTCCTCATTCAGACAGCAGCTGGGGTCCACGCCGTGAGCCAGCAGTAGCTGCGTGGCTTTCAAGCAGAAGTTGCCGATCTCAGCAGCGTCCTCCGTAGTGGCCTCCAGAGCCTCCTTCACCAGGAACACCAACGAGGACTCAACGGTTTCACCATCGACAGTAGCAGCATTAACGTCAGCACCTCTGAAGTAGAAGCTGGATGTTCTCCGTGTTGTGCACAGTGAGTCCGTCGCTGCTCGCCAAGGCATGGAGCAAAGGTGTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78268 lncRNA upstream 17099 1061418 ~ 1062510 (+) False G58215
TU78270 lncRNA upstream 17144 1061029 ~ 1062465 (+) True G58215
TU78267 lncRNA upstream 17144 1061418 ~ 1062465 (+) False G58215
TU78257 lncRNA upstream 26196 1053015 ~ 1053413 (+) True G58209
TU78185 lncRNA upstream 180103 898893 ~ 899506 (+) True G58157
TU78297 lncRNA downstream 29526 1112754 ~ 1113040 (+) True G58237
TU78321 lncRNA downstream 247818 1331046 ~ 1331338 (+) True G58255
TU78322 lncRNA downstream 248318 1331546 ~ 1331998 (+) True G58256
TU78326 lncRNA downstream 250273 1333501 ~ 1333883 (+) True G58260
TU78338 lncRNA downstream 273622 1356850 ~ 1357249 (+) True G58269
XM_039803459.1 mRNA upstream 27326 1029257 ~ 1052283 (+) False adamts13
XM_039803458.1 mRNA upstream 27326 1029258 ~ 1052283 (+) True adamts13
XM_039803888.1 mRNA upstream 201792 870031 ~ 877817 (+) True zbtb34
XM_039804573.1 mRNA upstream 242213 789405 ~ 837396 (+) True lmx1bb
XM_039802122.1 mRNA upstream 306396 732697 ~ 773213 (+) True mvb12bb
XM_039802986.1 mRNA downstream 22736 1105964 ~ 1127084 (+) True LOC120560446
XM_039804456.1 mRNA downstream 74242 1157470 ~ 1329623 (+) True si:dkeyp-14d3.1
XM_039804458.1 mRNA downstream 169065 1252293 ~ 1329623 (+) False si:dkeyp-14d3.1
XM_039804544.1 mRNA downstream 288556 1371784 ~ 1396195 (+) True glt1d1
XM_039804545.1 mRNA downstream 288556 1371784 ~ 1395796 (+) False glt1d1
TU78000 other upstream 867239 210742 ~ 212370 (+) True LOC120560799
TU78941 other downstream 1795173 2878401 ~ 2879744 (+) False lman2lb
TU79382 other downstream 3034051 4117279 ~ 4117631 (+) True G59086
TU79482 other downstream 3340913 4424141 ~ 4429981 (+) True G59172
unassigned_transcript_241 other downstream 3348943 4432171 ~ 4432253 (+) True trnal-aag_1
unassigned_transcript_242 other downstream 3349440 4432668 ~ 4432739 (+) True trnaq-uug_2

Expression Profile