RNA id: TU78322


Basic Information

Item Value
RNA id TU78322
length 453
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G58256
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 1331546 ~ 1331998 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccggtctacggaaagccgttccactccctattcagccccattgtaccggattttggttgcagttccaccagagttccactgggggtgatcgcggtccagtgcagaatgaatgggactctatggagctagacggctaaatgtgtctctttcgcctgattgtcgttgagaaacctcagatttgattgtagtttttgcaagttcaacatgggttataggtcgaaagttgaatgaacgagtacttatgtcctttggATTTCTTACAAGGTGagtcgttgtagcccataacacgctagcattctgctaatgaatgctgattggtcagtgaaggagtgattacgatcggagatcccgcttgacggcatccgaagcggagcctgaatatcagagtgaatatttcggcgtggtctttaaaacatcagcaaacctctttctagcacgtgtattaacagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78321 lncRNA upstream 208 1331046 ~ 1331338 (+) True G58255
TU78297 lncRNA upstream 218506 1112754 ~ 1113040 (+) True G58237
TU78289 lncRNA upstream 248318 1079609 ~ 1083228 (+) True G58230
TU78268 lncRNA upstream 269036 1061418 ~ 1062510 (+) False G58215
TU78270 lncRNA upstream 269081 1061029 ~ 1062465 (+) True G58215
TU78326 lncRNA downstream 1503 1333501 ~ 1333883 (+) True G58260
TU78338 lncRNA downstream 24852 1356850 ~ 1357249 (+) True G58269
TU78361 lncRNA downstream 144676 1476674 ~ 1562520 (+) True G58286
TU78366 lncRNA downstream 144676 1476674 ~ 1562520 (+) False G58286
TU78455 lncRNA downstream 369909 1701907 ~ 1728333 (+) True G58347
XM_039804456.1 mRNA upstream 1923 1157470 ~ 1329623 (+) True si:dkeyp-14d3.1
XM_039804458.1 mRNA upstream 1923 1252293 ~ 1329623 (+) False si:dkeyp-14d3.1
XM_039802986.1 mRNA upstream 204462 1105964 ~ 1127084 (+) True LOC120560446
XM_039803459.1 mRNA upstream 279263 1029257 ~ 1052283 (+) False adamts13
XM_039804544.1 mRNA downstream 39786 1371784 ~ 1396195 (+) True glt1d1
XM_039804545.1 mRNA downstream 39786 1371784 ~ 1395796 (+) False glt1d1
XM_039804486.1 mRNA downstream 145090 1477088 ~ 1480626 (+) True fzd10
XM_039803421.1 mRNA downstream 169592 1501590 ~ 1531972 (+) True piwil1
XM_039803422.1 mRNA downstream 169592 1501590 ~ 1531972 (+) False piwil1
TU78000 other upstream 1119176 210742 ~ 212370 (+) True LOC120560799
TU78941 other downstream 1546403 2878401 ~ 2879744 (+) False lman2lb
TU79382 other downstream 2785281 4117279 ~ 4117631 (+) True G59086
TU79482 other downstream 3092143 4424141 ~ 4429981 (+) True G59172
unassigned_transcript_241 other downstream 3100173 4432171 ~ 4432253 (+) True trnal-aag_1
unassigned_transcript_242 other downstream 3100670 4432668 ~ 4432739 (+) True trnaq-uug_2

Expression Profile